Experiment set2IT038 for Escherichia coli BW25113
LB with Cobalt chloride hexahydrate 0.32 mM
Group: stressMedia: LB + Cobalt chloride hexahydrate (0.32 mM)
Culturing: Keio_ML9, 48 well microplate; Tecan Infinite F200, Aerobic, at 28 (C), shaken=orbital
By: Kelly on 6/30/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 960 B1,B2
Specific Phenotypes
For 8 genes in this experiment
For stress Cobalt chloride hexahydrate in Escherichia coli BW25113
For stress Cobalt chloride hexahydrate across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| ATP-dependent RNA helicases, bacterial | 1 |
| DNA repair, bacterial | 1 |
| Listeria phi-A118-like prophages | 1 |
| tRNA processing | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Porphyrin and chlorophyll metabolism
- Carotenoid biosynthesis - General
- Alkaloid biosynthesis I
- Insect hormone biosynthesis
- Ubiquinone and menaquinone biosynthesis
- Puromycin biosynthesis
- Pyrimidine metabolism
- Histidine metabolism
- Tyrosine metabolism
- Tryptophan metabolism
- Benzoxazinone biosynthesis
- Nucleotide sugars metabolism
- alpha-Linolenic acid metabolism
- Naphthalene and anthracene degradation
- Trinitrotoluene degradation
- Phenylpropanoid biosynthesis
- Flavonoid biosynthesis
- Anthocyanin biosynthesis
- Biosynthesis of alkaloids derived from shikimate pathway
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pseudouridine degradation | 2 | 2 | 1 |