Experiment set2IT035 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with Chloramphenicol 0.001 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
Echvi_3347 +1.4 2.2 hypothetical protein compare
Echvi_3934 +1.2 2.2 hypothetical protein compare
Echvi_4347 +1.1 2.4 DNA repair proteins compare
Echvi_4084 +1.0 1.7 glycine cleavage system H protein compare
Echvi_4025 +1.0 2.6 hypothetical protein compare
Echvi_3142 +1.0 1.2 hypothetical protein compare
Echvi_1648 +1.0 2.6 hypothetical protein compare
Echvi_0650 +0.9 1.9 thioredoxin compare
Echvi_0346 +0.9 2.6 Predicted acyltransferase compare
Echvi_4375 +0.9 1.4 hypothetical protein compare
Echvi_3292 +0.8 1.5 hypothetical protein compare
Echvi_3872 +0.8 1.5 SnoaL-like polyketide cyclase. compare
Echvi_4640 +0.8 1.6 hypothetical protein compare
Echvi_1020 +0.8 1.1 hypothetical protein compare
Echvi_1689 +0.7 1.3 hypothetical protein compare
Echvi_3998 +0.7 1.3 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog compare
Echvi_4595 +0.7 1.5 hypothetical protein compare
Echvi_1552 +0.7 2.3 hypothetical protein compare
Echvi_4383 +0.7 1.7 hypothetical protein compare
Echvi_1280 +0.7 1.5 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
Echvi_0128 +0.7 1.4 hypothetical protein compare
Echvi_2555 +0.7 1.2 hypothetical protein compare
Echvi_0293 +0.7 1.6 hypothetical protein compare
Echvi_2225 +0.6 1.8 Transposase DDE domain./Transposase domain (DUF772). compare
Echvi_0260 +0.6 2.4 Protein of unknown function (DUF3467). compare
Echvi_2047 +0.6 4.0 RNA polymerase sigma factor, sigma-70 family compare
Echvi_2330 +0.6 1.9 hypothetical protein compare
Echvi_2402 +0.6 1.5 hypothetical protein compare
Echvi_2709 +0.6 1.7 Predicted enzyme related to lactoylglutathione lyase compare
Echvi_3835 +0.6 1.9 hypothetical protein compare
Echvi_1236 +0.6 1.6 hypothetical protein compare
Echvi_0342 +0.6 1.0 ATP-dependent DNA helicase, RecQ family compare
Echvi_3973 +0.5 2.8 hypothetical protein compare
Echvi_3262 +0.5 1.5 hypothetical protein compare
Echvi_1603 +0.5 1.5 hypothetical protein compare
Echvi_2538 +0.5 1.1 Uncharacterized protein conserved in bacteria compare
Echvi_3440 +0.5 1.1 bacillithiol biosynthesis deacetylase BshB1 compare
Echvi_3914 +0.5 4.7 Transcriptional regulators compare
Echvi_0723 +0.5 1.7 hypothetical protein compare
Echvi_3505 +0.5 0.9 hypothetical protein compare
Echvi_0946 +0.5 2.5 hypothetical protein compare
Echvi_4611 +0.5 0.8 hypothetical protein compare
Echvi_4319 +0.5 2.5 hypothetical protein compare
Echvi_4024 +0.5 1.7 hypothetical protein compare
Echvi_2238 +0.5 1.3 hypothetical protein compare
Echvi_1752 +0.5 1.4 hypothetical protein compare
Echvi_0370 +0.5 2.0 WbqC-like protein family. compare
Echvi_0475 +0.5 2.2 Uncharacterized protein conserved in bacteria compare
Echvi_0459 +0.5 1.8 Fic/DOC family. compare
Echvi_2503 +0.5 1.2 hypothetical protein compare
Echvi_3370 +0.5 1.6 Predicted membrane protein compare
Echvi_3745 +0.5 2.5 hypothetical protein compare
Echvi_1900 +0.5 1.9 nitrite reductase [NAD(P)H], small subunit compare
Echvi_2864 +0.5 1.9 Predicted acetyltransferase compare
Echvi_3229 +0.5 2.0 hypothetical protein compare
Echvi_3178 +0.5 1.8 hypothetical protein compare
Echvi_0096 +0.4 0.8 Predicted pyrophosphatase compare
Echvi_4263 +0.4 2.0 hypothetical protein compare
Echvi_4080 +0.4 0.6 hypothetical protein compare
Echvi_2930 +0.4 1.4 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
Echvi_3922 +0.4 1.5 hypothetical protein compare
Echvi_0428 +0.4 2.4 Helix-turn-helix. compare
Echvi_3519 +0.4 2.1 hypothetical protein compare
Echvi_3515 +0.4 1.7 Bacterial mobilisation protein (MobC). compare
Echvi_2297 +0.4 1.0 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Echvi_4361 +0.4 1.4 hypothetical protein compare
Echvi_1980 +0.4 0.8 hypothetical protein compare
Echvi_4085 +0.4 1.0 hypothetical protein compare
Echvi_0903 +0.4 2.5 Glycosyltransferases involved in cell wall biogenesis compare
Echvi_0472 +0.4 1.6 hypothetical protein compare
Echvi_2233 +0.4 2.1 pyridoxal phosphate enzyme, YggS family compare
Echvi_1854 +0.4 0.9 tRNA compare
Echvi_1284 +0.4 2.2 ABC-type sugar transport system, periplasmic component compare
Echvi_3209 +0.4 2.0 Predicted membrane protein compare
Echvi_0527 +0.4 1.7 Predicted endonuclease containing a URI domain compare
Echvi_2219 +0.4 1.3 ADP-ribose pyrophosphatase compare
Echvi_1950 +0.4 0.8 hypothetical protein compare
Echvi_2917 +0.4 1.5 hypothetical protein compare
Echvi_2872 +0.4 2.1 hypothetical protein compare
Echvi_4600 +0.4 1.4 Uncharacterized conserved protein compare
Echvi_1460 +0.4 1.2 Thymidine kinase compare
Echvi_0157 +0.4 1.0 hexose kinase, 1-phosphofructokinase family compare
Echvi_1258 +0.4 2.1 Peptide methionine sulfoxide reductase compare
Echvi_3075 +0.4 0.9 hypothetical protein compare
Echvi_3050 +0.4 2.1 hypothetical protein compare
Echvi_2984 +0.4 1.8 hypothetical protein compare
Echvi_1987 +0.4 1.5 recombination protein RecR compare
Echvi_0536 +0.4 1.7 hypothetical protein compare
Echvi_1271 +0.4 1.4 hypothetical protein compare
Echvi_2758 +0.4 1.8 hypothetical protein compare
Echvi_3318 +0.4 2.0 hypothetical protein compare
Echvi_4325 +0.4 1.5 hypothetical protein compare
Echvi_2424 +0.4 1.4 hypothetical protein compare
Echvi_3680 +0.4 1.4 Predicted transcriptional regulators compare
Echvi_1285 +0.4 1.2 Transketolase, C-terminal subunit compare
Echvi_3223 +0.3 0.9 Mn-dependent transcriptional regulator compare
Echvi_3245 +0.3 2.1 Predicted membrane protein compare
Echvi_2993 +0.3 1.4 Predicted CoA-binding protein compare
Echvi_2570 +0.3 1.6 Protein of unknown function (DUF664). compare
Echvi_2633 +0.3 1.9 gamma-glutamylphosphate reductase (EC 1.2.1.41) (from data) compare
Echvi_2790 +0.3 2.0 adenosylmethionine-8-amino-7-oxononanoate transaminase compare
Echvi_1917 +0.3 1.9 hypothetical protein compare
Echvi_0799 +0.3 2.2 Uncharacterized conserved protein compare
Echvi_0822 +0.3 1.3 Acetyltransferases compare
Echvi_3369 +0.3 1.4 Protein of unknown function (DUF2752). compare
Echvi_0025 +0.3 0.5 DNA repair proteins compare
Echvi_1136 +0.3 1.0 Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases compare
Echvi_3349 +0.3 2.4 Formate/nitrite family of transporters compare
Echvi_0945 +0.3 1.0 hypothetical protein compare
Echvi_1616 +0.3 1.6 hypothetical protein compare
Echvi_3103 +0.3 2.2 Transcriptional regulators compare
Echvi_1115 +0.3 1.3 hypothetical protein compare
Echvi_0614 +0.3 1.6 hypothetical protein compare
Echvi_2945 +0.3 1.6 Domain of unknown function (DUF1905). compare
Echvi_2942 +0.3 1.6 AraC-type DNA-binding domain-containing proteins compare
Echvi_4456 +0.3 1.7 Transposase DDE domain. compare
Echvi_0659 +0.3 1.2 Uncharacterized membrane protein, required for colicin V production compare
Echvi_0935 +0.3 1.3 bacillithiol system protein YtxJ compare
Echvi_3970 +0.3 2.3 hypothetical protein compare
Echvi_3412 +0.3 2.0 hypothetical protein compare
Echvi_3713 +0.3 1.9 Predicted metal-dependent membrane protease compare
Echvi_4140 +0.3 2.0 Copper chaperone compare
Echvi_4115 +0.3 1.9 Nitrogen regulatory protein PII compare
Echvi_2943 +0.3 0.6 Protein chain release factor B compare
Echvi_0848 +0.3 1.9 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family compare
Echvi_4485 +0.3 1.0 Transposase and inactivated derivatives compare
Echvi_3527 +0.3 1.7 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_1043 +0.3 1.9 hypothetical protein compare
Echvi_4099 +0.3 0.4 hypothetical protein compare
Echvi_0515 +0.3 1.2 Ribulokinase (EC 2.7.1.16) (from data) compare
Echvi_1227 +0.3 0.4 hypothetical protein compare
Echvi_1942 +0.3 1.5 Bacteroides conjugative transposon TraK protein compare
Echvi_2339 +0.3 1.3 Cytochrome bd-type quinol oxidase, subunit 1 compare
Echvi_2443 +0.3 0.8 hypothetical protein compare
Echvi_2377 +0.3 0.6 hypothetical protein compare
Echvi_4158 +0.3 1.7 Response regulator of the LytR/AlgR family compare
Echvi_1930 +0.3 0.8 DNA repair proteins compare
Echvi_0985 +0.3 1.5 Predicted membrane protein compare
Echvi_0938 +0.3 1.1 Protein of unknown function (DUF1572). compare
Echvi_0595 +0.3 2.2 Cellulase M and related proteins compare
Echvi_1442 +0.3 1.2 hypothetical protein compare
Echvi_4334 +0.3 0.6 hypothetical protein compare
Echvi_0599 +0.3 1.2 hypothetical protein compare
Echvi_1380 +0.3 2.2 Fe2+-dicitrate sensor, membrane component compare
Echvi_0219 +0.3 1.2 hypothetical protein compare
Echvi_1144 +0.3 2.0 Glutamate decarboxylase and related PLP-dependent proteins compare
Echvi_0582 +0.3 1.1 hypothetical protein compare
Echvi_2697 +0.3 1.5 hypothetical protein compare
Echvi_0374 +0.3 1.9 Predicted membrane protein compare
Echvi_3172 +0.3 0.8 hypothetical protein compare
Echvi_1756 +0.3 2.1 Glutamate dehydrogenase/leucine dehydrogenase compare
Echvi_4638 +0.3 2.5 SusD family. compare
Echvi_4299 +0.3 1.5 Protein of unknown function (DUF2703). compare
Echvi_4534 +0.3 0.9 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 compare
Echvi_2134 +0.3 1.0 hypothetical protein compare
Echvi_1638 +0.3 0.7 hypothetical protein compare
Echvi_0750 +0.3 0.8 hypothetical protein compare
Echvi_1254 +0.3 0.7 hypothetical protein compare
Echvi_3814 +0.3 1.2 Uncharacterized conserved protein compare
Echvi_4074 +0.3 2.2 Tetratricopeptide repeat. compare
Echvi_0615 +0.3 1.3 Integral membrane protein CcmA involved in cell shape determination compare
Echvi_0325 +0.3 1.2 Predicted transcriptional regulator with C-terminal CBS domains compare
Echvi_4356 +0.3 1.4 hypothetical protein compare
Echvi_0359 +0.3 1.1 hypothetical protein compare
Echvi_2827 +0.3 1.5 Zn-dependent hydrolases, including glyoxylases compare
Echvi_2406 +0.3 2.3 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
Echvi_2466 +0.3 1.1 Glutathione peroxidase compare
Echvi_2775 +0.3 1.6 Universal stress protein UspA and related nucleotide-binding proteins compare
Echvi_0004 +0.3 1.3 hypothetical protein compare
Echvi_0063 +0.3 2.2 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
Echvi_1344 +0.3 0.4 tRNA compare
Echvi_0123 +0.3 1.2 prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) compare
Echvi_2183 +0.3 1.2 hypothetical protein compare
Echvi_4587 +0.3 0.8 hypothetical protein compare
Echvi_1408 +0.3 1.6 DNA adenine methylase (dam) compare
Echvi_4415 +0.3 1.5 Transcription antiterminator compare
Echvi_1554 +0.3 1.1 Domain of unknown function (DU1801). compare
Echvi_3708 +0.3 0.8 anti-anti-sigma factor compare
Echvi_3053 +0.3 1.2 Membrane transporters of cations and cationic drugs compare
Echvi_1577 +0.3 1.0 hypothetical protein compare
Echvi_1803 +0.3 1.3 hypothetical protein compare
Echvi_2894 +0.3 1.5 YceI-like domain. compare
Echvi_0015 +0.3 0.6 succinyl-CoA synthetase, alpha subunit compare
Echvi_1579 +0.3 1.3 hypothetical protein compare
Echvi_4650 +0.3 1.2 Uncharacterized protein conserved in bacteria compare
Echvi_3564 +0.3 0.7 Uncharacterized enzyme of thiazole biosynthesis compare
Echvi_1548 +0.3 1.4 hypothetical protein compare
Echvi_0603 +0.3 1.7 RNA polymerase sigma factor, sigma-70 family compare
Echvi_4644 +0.3 0.9 S23 ribosomal protein. compare
Echvi_3805 +0.3 1.2 Sugar transferases involved in lipopolysaccharide synthesis compare
Echvi_1677 +0.3 1.9 Alpha-glucosidases, family 31 of glycosyl hydrolases compare
Echvi_4162 +0.3 0.9 Flavodoxins compare
Echvi_2423 +0.3 1.6 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
Echvi_4616 +0.3 1.9 ABC-type antimicrobial peptide transport system, permease component compare
Echvi_1495 +0.3 1.2 hypothetical protein compare
Echvi_3994 +0.3 1.7 Transglutaminase-like enzymes, putative cysteine proteases compare
Echvi_3030 +0.3 1.6 methionine aminopeptidase, type I compare
Echvi_3484 +0.3 1.4 hypothetical protein compare
Echvi_3287 +0.3 0.8 hypothetical protein compare
Echvi_2182 +0.3 1.8 Alpha-L-fucosidase compare


Specific Phenotypes

None in this experiment

For Echinicola vietnamensis KMM 6221, DSM 17526 in stress experiments

For stress Chloramphenicol across organisms