Experiment set2IT035 for Agrobacterium fabrum C58

Compare to:

D-Raffinose pentahydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1850 -7.7 -5.3 phosphoribosylformylglycinamidine synthetase II compare
Atu2791 -7.7 -5.3 3-isopropylmalate dehydrogenase compare
Atu0099 -7.7 -5.3 prephenate dehydratase compare
Atu1845 -7.4 -5.1 phosphoribosylformylglycinamidine synthase I compare
Atu2650 -7.4 -10.1 glycerol-3-phosphate dehydrogenase compare
Atu0432 -7.3 -7.1 O-succinylhomoserine sulfhydrylase compare
Atu2726 -7.0 -18.2 pyruvate carboxylase compare
Atu1205 -7.0 -8.3 threonine dehydratase compare
Atu2709 -6.9 -14.8 3-isopropylmalate dehydratase, large subunit compare
Atu1750 -6.9 -4.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu2289 -6.7 -15.6 anthranilate synthase component I and II compare
Atu0298 -6.6 -6.5 orotidine 5 compare
Atu0038 -6.6 -6.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1308 -6.5 -6.6 aspartate carbamoyl transferase catalytic subunit compare
Atu1687 -6.4 -10.8 anthranilate phosphoribosyltransferase compare
Atu2264 -6.4 -13.7 2-isopropylmalate synthase compare
Atu1588 -6.4 -8.7 homoserine dehydrogenase compare
Atu1141 -6.2 -7.4 Phosphoribosylglycinamide synthetase compare
Atu0400 -6.1 -5.9 orotate phosphoribosyltransferase compare
Atu3707 -6.0 -4.1 phosphoserine aminotransferase compare
Atu3885 -6.0 -9.1 inositol monophosphatase compare
Atu0679 -5.9 -7.0 ATP phosphoribosyltransferase compare
Atu1307 -5.9 -7.0 dihydroorotase compare
Atu1140 -5.9 -6.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2747 -5.9 -15.0 hypothetical protein compare
Atu3706 -5.8 -9.7 D-3-phosphoglycerate dehydrogenase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4663 -5.8 -9.8 oligopeptide ABC transporter permease conserved
Atu0486 -5.7 -6.7 dihydroorotate dehydrogenase compare
Atu2036 -5.7 -16.5 acetolactate synthase III, large subunit compare
Atu1688 -5.7 -5.5 indole-3-glycerol-phosphate synthase compare
Atu3482 -5.6 -11.9 pantoate--beta-alanine ligase compare
Atu4662 -5.5 -11.3 oligopeptide ABC transporter permease conserved
Atu4661 -5.4 -20.8 alpha-galactoside ABC transporter substrate-binding protein conserved
Atu2718 -5.4 -9.7 homoserine O-succinyltransferase compare
Atu1075 -5.3 -8.1 amidophosphoribosyltransferase compare
Atu2040 -5.3 -6.3 phosphoserine phosphatase compare
Atu0537 -5.3 -6.3 histidinol dehydrogenase compare
Atu1844 -5.2 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu4659 -5.2 -9.1 AraC family transcriptional regulator conserved
Atu2790 -5.2 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu4660 -5.1 -10.3 alpha-galactosidase conserved
Atu3754 -5.1 -6.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2015 -5.1 -15.7 aminotransferase compare
Atu0678 -5.1 -6.9 histidyl-tRNA synthetase compare
Atu4664 -5.1 -13.4 oligopeptide ABC transporter ATPase conserved
Atu0641 -5.0 -4.8 hypothetical protein compare
Atu0647 -4.9 -5.9 phosphoribosylamine--glycine ligase compare
Atu4665 -4.9 -11.0 alpha-galactosidase conserved
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu1359 -4.8 -2.0 dnaK deletion suppressor protein compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu0399 -4.8 -8.0 dihydroorotase compare
Atu3755 -4.7 -6.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3783 -4.5 -17.3 glutamate synthase subunit beta compare
Atu3784 -4.2 -26.3 glutamate synthase large subunit compare
Atu3483 -4.2 -4.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0043 -4.1 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu1456 -4.1 -12.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1686 -4.0 -16.9 peptidyl-prolyl cis-trans isomerse D compare
Atu3469 -3.9 -3.8 phosphoglyceromutase compare
Atu6098 -3.9 -1.6 transcriptional regulator, HTH family compare
Atu0876 -3.8 -3.3 superoxide dismutase compare
Atu1446 -3.7 -4.3 two component response regulator compare
Atu2548 -3.6 -17.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1454 -3.5 -7.9 siroheme synthase compare
Atu4098 -3.4 -10.5 quinolinate synthetase compare
Atu0703 -3.4 -4.0 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1589 -3.4 -9.0 aminotransferase, class I compare
Atu0792 -3.3 -7.5 hypothetical protein compare
Atu3739 -3.3 -4.3 phosphoglycerate kinase compare
Atu0030 -3.2 -2.7 phosphocarrier protein HPr compare
Atu0723 -3.1 -2.1 FAD dependent oxidoreductase compare
Atu3731 -3.1 -9.6 5-formyltetrahydrofolate cyclo-ligase compare
Atu4096 -3.0 -10.2 nicotinate-nucleotide pyrophosphorylase compare
Atu4097 -3.0 -13.7 L-aspartate oxidase compare
Atu0434 -3.0 -3.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2155 -3.0 -18.3 methionine synthase compare
Atu1462 -2.9 -12.4 glycine cleavage system protein P2 compare
Atu3999 -2.9 -2.0 dithiobiotin synthetase compare
Atu0040 -2.8 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1464 -2.8 -6.8 glycine cleavage system T protein, aminomethyltransferase compare
Atu1463 -2.7 -4.7 glycine cleavage system component H compare
Atu2205 -2.7 -9.3 transcriptional regulator, MarR family compare
Atu0401 -2.7 -8.5 fructokinase compare
Atu1748 -2.5 -10.6 NIFU-like protein compare
Atu3997 -2.5 -13.7 biotin synthetase compare
Atu0029 -2.5 -5.4 S-adenosylhomocysteine hydrolase compare
Atu1685 -2.5 -1.8 hypothetical protein compare
Atu0536 -2.5 -8.4 hypothetical protein compare
Atu3290 -2.1 -10.7 phosphomethylpyrimidine kinase compare
Atu1570 -2.1 -1.5 hypothetical protein compare
Atu1457 -2.1 -2.4 hypothetical protein compare
Atu1455 -2.1 -4.5 hypothetical protein compare
Atu1620 -2.0 -8.6 triosephosphate isomerase compare
Atu2569 -1.9 -11.4 thiamine biosynthesis protein compare
Atu0803 -1.8 -13.4 pyruvate,orthophosphate dikinase compare
Atu8115 -1.8 -4.4 Hypothetical Protein compare
Atu1604 -1.8 -12.4 poly-beta-hydroxybutyrate synthase compare
Atu0598 -1.8 -6.0 phosphogluconate dehydratase compare
Atu3219 -1.8 -9.3 dihydroxy-acid dehydratase compare
Atu0322 -1.7 -6.5 enoyl CoA hydratase compare
Atu3288 -1.7 -7.5 hydroxyethylthiazole kinase compare
Atu0704 -1.6 -8.8 2-dehydro-3-deoxygalactonate kinase compare
Atu3730 -1.6 -1.7 hypothetical protein compare
Atu4000 -1.6 -10.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu1030 -1.6 -0.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3998 -1.5 -8.9 8-amino-7-oxononanoate synthase compare
Atu5540 -1.5 -1.4 hypothetical protein compare
Atu3120 -1.5 -1.8 hypothetical protein compare
Atu2800 -1.4 -5.5 precorrin-3B C17-methyltransferase compare
Atu3289 -1.4 -3.1 thiamine-phosphate pyrophosphorylase compare
Atu4711 -1.4 -5.8 two component sensor kinase compare
Atu4001 -1.4 -6.9 3-oxoacyl-ACP synthase compare
Atu6114 -1.3 -2.4 hypothetical protein compare
Atu2770 -1.3 -3.9 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu5451 -1.3 -1.3 hypothetical protein compare
Atu0894 -1.3 -2.4 ABC transporter, membrane spanning protein compare
Atu2209 -1.2 -3.7 pyrroline-5-carboxylate reductase compare
Atu8162 -1.2 -1.5 hypothetical protein compare
Atu2127 -1.2 -7.0 L-carnitine dehydratase compare
Atu2801 -1.2 -3.3 precorrin-2 C20 methyltransferase compare
Atu4317 -1.2 -4.0 TetR family transcriptional regulator compare
Atu1542 -1.2 -4.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1810 -1.2 -1.5 hypothetical protein compare
Atu2123 -1.2 -5.3 methylenetetrahydrofolate reductase compare
Atu0422 -1.2 -2.1 ABC transporter, membrane spanning protein compare
Atu2803 -1.2 -3.6 Cobalamin biosynthesis associated protein compare
Atu4773 -1.2 -2.0 two component response regulator compare
Atu1891 -1.1 -3.4 cobalamin biosynthesis protein compare
Atu5430 -1.1 -1.4 hypothetical protein compare
Atu0361 -1.1 -2.7 transcriptional regulator compare
Atu1572 -1.1 -6.1 hydrolase compare
Atu2684 -1.1 -1.9 hypothetical protein compare
Atu0184 -1.1 -1.9 glucokinase compare
Atu2376 -1.1 -0.9 hypothetical protein compare
Atu1163 -1.0 -2.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0346 -1.0 -1.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1774 -1.0 -5.2 ABC transporter, substrate binding protein (peptide) compare
Atu3712 -1.0 -1.2 hypothetical protein compare
Atu2555 -1.0 -3.5 L-lysine 2,3-aminomutase compare
Atu2808 -0.9 -4.0 cobyric acid synthase compare
Atu0705 -0.9 -4.6 3-oxoacyl-(acyl carrier protein) reductase compare
Atu2802 -0.9 -4.8 precorrin-8X methylmutase compare
Atu3908 -0.9 -6.3 GntR family transcriptional regulator compare
Atu0824 -0.9 -1.1 hypothetical protein compare
Atu0031 -0.9 -1.3 PTS system, IIA component compare
Atu2795 -0.9 -3.6 cobalamin biosynthetic protein compare
Atu3750 -0.9 -1.7 thiamine-phosphate pyrophosphorylase compare
Atu0640 -0.9 -0.8 hypothetical protein compare
Atu1113 -0.9 -3.5 dehydrogenase compare
Atu1518 -0.8 -2.1 transcriptional regulator, Fur family compare
Atu0592 -0.8 -4.4 ABC transporter, membrane spanning protein compare
Atu0502 -0.8 -4.5 acetyl-CoA acetyltransferase compare
Atu3613 -0.8 -3.3 hypothetical protein compare
Atu2809 -0.8 -4.1 cobalamin biosynthesis protein compare
Atu1419 -0.8 -3.8 transcriptional regulator, GntR family compare
Atu4075 -0.8 -3.7 glycogen synthase compare
Atu4173 -0.8 -2.3 phosphoenolpyruvate-protein phosphotransferase compare
Atu2057 -0.8 -2.2 DNA helicase II compare
Atu0893 -0.8 -2.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2807 -0.8 -3.7 cob(I)alamin adenosyltransferase compare
Atu2793 -0.8 -3.1 cobyrinic acid a,c-diamide synthase compare
Atu2746 -0.8 -2.7 hypothetical protein compare
Atu4072 -0.8 -1.3 nodulation protein N compare
Atu1339 -0.8 -2.5 ribonuclease E compare
Atu1028 -0.8 -1.8 hypothetical protein compare
Atu2804 -0.8 -5.1 cobaltochelatase subunit compare
Atu0047 -0.8 -5.9 malate synthase G compare
Atu1677 -0.8 -2.1 queuine tRNA-ribosyltransferase compare
Atu3732 -0.7 -4.3 hemolysin compare
Atu1175 -0.7 -1.2 hypothetical protein compare
Atu2799 -0.7 -2.3 precorrin-6x reductase compare
Atu3496 -0.7 -2.3 hypothetical protein compare
Atu0230 -0.7 -1.5 hypothetical protein compare
Atu0594 -0.7 -3.4 alpha-glucosidase compare
Atu3668 -0.7 -1.9 siderophore biosynthesis protein compare
Atu8046 -0.7 -2.2 hypothetical protein compare
Atu4108 -0.7 -4.9 ribonuclease D compare
Atu1634 -0.7 -1.4 hypothetical protein compare
Atu2640 -0.7 -2.4 hypothetical protein compare
Atu2798 -0.7 -1.8 precorrin-6y methyltransferase compare
Atu0149 -0.7 -2.4 enoyl-(acyl-carrier-protein) reductase compare
Atu0601 -0.7 -3.9 oxidoreductase compare
Atu4053 -0.7 -1.4 succinoglycan biosynthesis protein compare
Atu0354 -0.7 -1.4 ferric uptake regulator compare
Atu2554 -0.7 -1.6 lysyl-tRNA synthetase compare
Atu4176 -0.7 -2.4 hypothetical protein compare
Atu1679 -0.7 -1.4 peptidyl prolyl cis-trans isomerase compare
Atu0501 -0.7 -4.7 acyl-CoA dehydrogenase compare
Atu0368 -0.7 -2.1 tRNA pseudouridine synthase I compare
Atu6165 -0.7 -0.8 hypothetical protein compare
Atu3633 -0.6 -3.6 hypothetical protein compare
Atu0972 -0.6 -3.0 lipA protein compare
Atu2821 -0.6 -3.0 transcriptional regulator, GntR family compare
Atu4819 -0.6 -1.9 hypothetical protein compare
Atu5045 -0.6 -1.4 hypothetical protein compare
Atu3337 -0.6 -3.6 LacI family transcriptional regulator compare
Atu3486 -0.6 -1.2 DeoR family transcriptional regulator compare
Atu0421 -0.6 -1.1 ABC transporter, membrane spanning protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Raffinose pentahydrate in Agrobacterium fabrum C58

For carbon source D-Raffinose pentahydrate across organisms