Experiment set2IT034 for Pseudomonas sp. RS175

Compare to:

4-Guanidinobutyric acid carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_04278 -6.0 -10.8 Dihydroxy-acid dehydratase compare
PFR28_02821 -5.5 -20.2 3-isopropylmalate dehydrogenase compare
PFR28_00778 -5.3 -9.5 Guanidinobutyrase conserved
PFR28_04755 -5.2 -14.7 Glutarate-semialdehyde dehydrogenase compare
PFR28_01365 -5.0 -7.6 hypothetical protein compare
PFR28_03697 -4.9 -16.9 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_02810 -4.8 -19.6 O-succinylhomoserine sulfhydrylase compare
PFR28_04834 -4.7 -19.7 L-threonine dehydratase biosynthetic IlvA compare
PFR28_03363 -4.7 -19.6 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_02824 -4.5 -8.3 3-isopropylmalate dehydratase large subunit compare
PFR28_01127 -4.5 -15.2 Soluble pyridine nucleotide transhydrogenase compare
PFR28_04245 -4.5 -18.5 Homoserine O-succinyltransferase compare
PFR28_04202 -4.4 -5.3 5,10-methylenetetrahydrofolate reductase compare
PFR28_05105 -4.3 -13.2 Phosphoserine phosphatase SerB2 compare
PFR28_01366 -4.3 -12.6 Sulfite reductase [ferredoxin] compare
PFR28_00779 -4.3 -15.3 hypothetical protein conserved
PFR28_02811 -4.2 -8.1 Amidophosphoribosyltransferase compare
PFR28_03012 -4.2 -9.8 Phosphate acyltransferase compare
PFR28_01676 -4.2 -17.8 Na(+)/H(+) antiporter NhaB compare
PFR28_02823 -4.2 -3.1 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_04756 -4.2 -14.4 5-aminovalerate aminotransferase DavT compare
PFR28_03699 -4.1 -9.1 Acetolactate synthase isozyme 3 large subunit compare
PFR28_03612 -4.1 -7.3 Cell division protein ZapE compare
PFR28_04832 -3.9 -15.1 putative phosphatase compare
PFR28_02603 -3.8 -10.6 Siroheme synthase compare
PFR28_00188 -3.7 -15.1 Histidinol-phosphate aminotransferase compare
PFR28_00775 -3.7 -17.6 Osmoregulated proline transporter OpuE conserved
PFR28_04932 -3.6 -7.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_03388 -3.6 -16.9 Quinolinate synthase A compare
PFR28_04246 -3.6 -12.0 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_00776 -3.5 -12.1 hypothetical protein compare
PFR28_04830 -3.4 -14.9 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_00305 -3.3 -9.2 2-isopropylmalate synthase compare
PFR28_03860 -3.3 -5.8 putative murein peptide carboxypeptidase compare
PFR28_03698 -3.3 -12.6 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04930 -3.3 -12.4 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_04842 -3.3 -5.8 D-3-phosphoglycerate dehydrogenase compare
PFR28_04933 -3.3 -4.4 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_04308 -3.3 -5.3 Amino-acid acetyltransferase compare
PFR28_03635 -3.2 -7.4 Malate:quinone oxidoreductase compare
PFR28_03718 -3.2 -6.0 Transcriptional regulatory protein ZraR compare
PFR28_04887 -3.2 -6.3 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_04628 -3.1 -4.6 Thiol:disulfide interchange protein DsbA compare
PFR28_00098 -3.1 -9.2 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_00187 -3.1 -14.2 Histidinol dehydrogenase compare
PFR28_03217 -3.0 -3.5 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_03218 -2.8 -6.3 Phosphoribosylglycinamide formyltransferase compare
PFR28_04929 -2.7 -7.9 Histidine biosynthesis bifunctional protein HisB compare
PFR28_04071 -2.7 -1.9 Multifunctional CCA protein compare
PFR28_04936 -2.7 -6.1 Carboxy-terminal processing protease CtpB compare
PFR28_04103 -2.5 -10.8 Biotin synthase compare
PFR28_04565 -2.5 -14.4 Protein RarD compare
PFR28_00966 -2.5 -16.1 HTH-type transcriptional regulator CysB compare
PFR28_03223 -2.5 -14.2 GTP pyrophosphokinase compare
PFR28_05045 -2.4 -13.3 K(+)/H(+) antiporter NhaP2 compare
PFR28_02608 -2.4 -3.9 DNA translocase FtsK compare
PFR28_00186 -2.4 -7.3 ATP phosphoribosyltransferase compare
PFR28_01156 -2.4 -6.6 hypothetical protein compare
PFR28_03721 -2.3 -6.2 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_00837 -2.3 -8.8 hypothetical protein compare
PFR28_05244 -2.3 -12.6 Copper-exporting P-type ATPase compare
PFR28_04436 -2.2 -9.3 hypothetical protein compare
PFR28_02960 -2.2 -5.6 hypothetical protein compare
PFR28_01083 -2.2 -7.3 putative copper-importing P-type ATPase A compare
PFR28_04986 -2.1 -7.3 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_02838 -2.0 -10.3 Aromatic-amino-acid aminotransferase compare
PFR28_03657 -2.0 -7.2 Beta-barrel assembly-enhancing protease compare
PFR28_00851 -2.0 -2.4 Flagellum site-determining protein YlxH compare
PFR28_03714 -2.0 -12.9 RNA polymerase-binding transcription factor DksA compare
PFR28_04102 -2.0 -10.0 8-amino-7-oxononanoate synthase compare
PFR28_00169 -2.0 -5.8 Phosphocarrier protein NPr compare
PFR28_01930 -2.0 -3.7 HTH-type transcriptional regulator McbR compare
PFR28_01081 -1.9 -6.6 hypothetical protein compare
PFR28_05062 -1.9 -10.0 Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme compare
PFR28_01113 -1.9 -4.6 DNA topoisomerase 1 compare
PFR28_03413 -1.9 -4.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_04399 -1.9 -7.2 D-amino acid dehydrogenase 1 compare
PFR28_04208 -1.8 -7.2 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PFR28_03169 -1.8 -11.3 Tail-specific protease compare
PFR28_03596 -1.8 -3.3 Transcriptional regulator MraZ compare
PFR28_00689 -1.8 -13.4 L-aspartate oxidase compare
PFR28_04985 -1.7 -3.8 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_00193 -1.7 -8.3 Sulfate adenylyltransferase subunit 2 compare
PFR28_03420 -1.7 -5.8 hypothetical protein compare
PFR28_01410 -1.7 -11.5 Response regulator GacA compare
PFR28_03846 -1.7 -6.5 hypothetical protein compare
PFR28_04874 -1.7 -8.3 Phosphoenolpyruvate carboxykinase (ATP) compare
PFR28_00194 -1.7 -8.3 Bifunctional enzyme CysN/CysC compare
PFR28_04100 -1.7 -7.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_05125 -1.6 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_05078 -1.6 -2.8 hypothetical protein compare
PFR28_04242 -1.5 -6.8 Pyridoxal phosphate homeostasis protein compare
PFR28_04423 -1.5 -3.5 DNA-directed RNA polymerase subunit omega compare
PFR28_04831 -1.5 -2.7 RNA pyrophosphohydrolase compare
PFR28_05212 -1.5 -9.0 Sensor histidine kinase RcsC compare
PFR28_02484 -1.5 -9.3 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_00918 -1.5 -7.9 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_03414 -1.5 -3.1 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_01372 -1.5 -2.9 Precorrin-4 C(11)-methyltransferase compare
PFR28_00839 -1.5 -6.3 hypothetical protein compare
PFR28_04064 -1.5 -4.0 Ribosomal RNA small subunit methyltransferase A compare
PFR28_04865 -1.4 -6.7 Glutamate--cysteine ligase compare
PFR28_00405 -1.4 -2.1 hypothetical protein compare
PFR28_03463 -1.4 -3.0 hypothetical protein compare
PFR28_01313 -1.3 -4.1 hypothetical protein compare
PFR28_04521 -1.3 -5.3 HTH-type transcriptional regulator HexR compare
PFR28_01154 -1.3 -2.1 hypothetical protein compare
PFR28_03227 -1.3 -8.1 Signal transduction histidine-protein kinase BarA compare
PFR28_04633 -1.3 -4.1 Alginate biosynthesis sensor protein KinB compare
PFR28_00873 -1.3 -4.7 hypothetical protein compare
PFR28_04345 -1.3 -10.2 Polyphosphate kinase compare
PFR28_01230 -1.3 -4.7 Lon protease compare
PFR28_01084 -1.3 -4.9 hypothetical protein compare
PFR28_04377 -1.2 -5.0 hypothetical protein compare
PFR28_01134 -1.2 -1.7 Transcriptional activator protein CopR compare
PFR28_04868 -1.2 -3.7 Transcriptional regulatory protein OmpR compare
PFR28_00926 -1.2 -1.7 hypothetical protein compare
PFR28_01265 -1.2 -6.9 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_04425 -1.2 -7.1 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_04485 -1.2 -2.3 Phosphate-specific transport system accessory protein PhoU compare
PFR28_00988 -1.2 -6.6 Sensor histidine kinase RcsC compare
PFR28_00480 -1.2 -4.6 HTH-type transcriptional activator CmpR compare
PFR28_05205 -1.2 -3.7 Precorrin-8X methylmutase compare
PFR28_00159 -1.2 -7.6 hypothetical protein compare
PFR28_03478 -1.1 -7.7 HTH-type transcriptional regulator MetR compare
PFR28_05139 -1.1 -1.7 hypothetical protein compare
PFR28_01387 -1.1 -2.0 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_03412 -1.1 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_00694 -1.1 -4.3 Beta-barrel assembly-enhancing protease compare
PFR28_00425 -1.1 -8.0 Protein-L-isoaspartate O-methyltransferase compare
PFR28_01616 -1.1 -2.6 HTH-type transcriptional regulator YofA compare
PFR28_00960 -1.1 -9.5 hypothetical protein compare
PFR28_00356 -1.1 -3.4 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_03151 -1.1 -2.5 Septum site-determining protein MinC compare
PFR28_04902 -1.1 -5.0 Inner membrane protein YgaZ compare
PFR28_04585 -1.0 -4.7 Chromosome partitioning protein ParA compare
PFR28_04958 -1.0 -1.5 hypothetical protein compare
PFR28_04347 -1.0 -6.4 hypothetical protein compare
PFR28_03664 -1.0 -2.6 Ribosome-binding ATPase YchF compare
PFR28_03719 -1.0 -3.3 Poly(A) polymerase I compare
PFR28_00241 -1.0 -4.2 Disulfide bond formation protein B compare
PFR28_04782 -1.0 -7.2 hypothetical protein compare
PFR28_02719 -1.0 -3.6 Integration host factor subunit alpha compare
PFR28_04498 -1.0 -2.7 Aspartate ammonia-lyase compare
PFR28_00983 -1.0 -5.6 Protease HtpX compare
PFR28_00961 -1.0 -6.8 hypothetical protein compare
PFR28_03778 -1.0 -1.1 hypothetical protein compare
PFR28_02613 -0.9 -6.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_04675 -0.9 -2.0 hypothetical protein compare
PFR28_00787 -0.9 -1.8 hypothetical protein compare
PFR28_03950 -0.9 -2.5 Transcriptional repressor NrdR compare
PFR28_02048 -0.9 -3.4 hypothetical protein compare
PFR28_04400 -0.9 -6.7 Leucine-responsive regulatory protein compare
PFR28_00074 -0.9 -3.9 Chaperone protein DnaJ compare
PFR28_04566 -0.9 -5.7 4-chloro-allylglycine synthase compare
PFR28_03191 -0.9 -1.3 hypothetical protein compare
PFR28_00424 -0.9 -4.8 '5'-nucleotidase SurE' transl_table=11 compare
PFR28_01602 -0.9 -7.4 NAD-specific glutamate dehydrogenase compare
PFR28_00913 -0.9 -3.4 Integration host factor subunit beta compare
PFR28_01879 -0.8 -1.3 hypothetical protein compare
PFR28_04567 -0.8 -6.1 hypothetical protein compare
PFR28_00780 -0.8 -1.1 hypothetical protein compare
PFR28_00473 -0.8 -1.7 Regulatory protein RecX compare
PFR28_01378 -0.8 -2.7 Magnesium-chelatase 38 kDa subunit compare
PFR28_01836 -0.8 -2.5 Transcriptional regulator SlyA compare
PFR28_00945 -0.8 -2.4 hypothetical protein compare
PFR28_03202 -0.8 -2.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_02705 -0.8 -1.3 hypothetical protein compare
PFR28_02210 -0.8 -1.4 cAMP-activated global transcriptional regulator CRP compare
PFR28_01527 -0.8 -5.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PFR28_03900 -0.8 -1.7 hypothetical protein compare
PFR28_03865 -0.8 -4.0 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_03625 -0.8 -6.0 Metalloprotease LoiP compare
PFR28_00222 -0.8 -6.2 hypothetical protein compare
PFR28_03209 -0.8 -2.9 Corrinoid adenosyltransferase compare
PFR28_00054 -0.8 -0.9 hypothetical protein compare
PFR28_02812 -0.8 -3.3 hypothetical protein compare
PFR28_01312 -0.8 -2.4 HTH-type transcriptional regulator NorG compare
PFR28_03603 -0.8 -6.3 Stringent starvation protein A compare
PFR28_03203 -0.8 -4.0 Bifunctional adenosylcobalamin biosynthesis protein CobP compare
PFR28_00855 -0.8 -4.3 hypothetical protein compare
PFR28_03844 -0.8 -2.8 Thiamine-phosphate synthase compare
PFR28_02740 -0.7 -1.7 hypothetical protein compare
PFR28_03016 -0.7 -4.0 hypothetical protein compare
PFR28_00006 -0.7 -2.1 RecBCD enzyme subunit RecC compare
PFR28_03255 -0.7 -5.8 Chemotaxis protein methyltransferase Cher2 compare
PFR28_04968 -0.7 -3.1 Glycine betaine transport system permease protein OpuAB compare
PFR28_01157 -0.7 -1.4 hypothetical protein compare
PFR28_04737 -0.7 -5.2 Protein YdgA compare
PFR28_00729 -0.7 -5.1 5-oxoprolinase subunit B compare
PFR28_03240 -0.7 -1.1 IS110 family transposase ISPfl1 compare
PFR28_00853 -0.7 -3.6 Chemotaxis protein CheY compare
PFR28_02100 -0.7 -2.3 hypothetical protein compare
PFR28_03369 -0.7 -3.1 Glycerol-3-phosphate regulon repressor compare
PFR28_01258 -0.7 -3.1 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
PFR28_00294 -0.7 -2.9 Dual-specificity RNA methyltransferase RlmN compare
PFR28_03219 -0.7 -5.5 hypothetical protein compare
PFR28_04297 -0.7 -4.0 Gamma-glutamylputrescine synthetase PuuA compare
PFR28_01251 -0.7 -1.5 ECF RNA polymerase sigma factor EcfG compare
PFR28_02167 -0.7 -2.3 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source 4-Guanidinobutyric acid in Pseudomonas sp. RS175

For carbon source 4-Guanidinobutyric acid across organisms