Experiment set2IT034 for Agrobacterium fabrum C58

Compare to:

D-Raffinose pentahydrate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -8.7 -6.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu3754 -8.3 -5.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1687 -8.0 -5.5 anthranilate phosphoribosyltransferase compare
Atu1308 -8.0 -5.5 aspartate carbamoyl transferase catalytic subunit compare
Atu0432 -7.7 -5.3 O-succinylhomoserine sulfhydrylase compare
Atu2791 -7.3 -7.1 3-isopropylmalate dehydrogenase compare
Atu0099 -7.2 -8.6 prephenate dehydratase compare
Atu2289 -7.2 -13.0 anthranilate synthase component I and II compare
Atu2709 -7.2 -14.6 3-isopropylmalate dehydratase, large subunit compare
Atu1205 -6.8 -9.4 threonine dehydratase compare
Atu0038 -6.8 -6.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0703 -6.7 -4.6 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu4663 -6.7 -9.3 oligopeptide ABC transporter permease conserved
Atu1140 -6.7 -5.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2726 -6.5 -21.7 pyruvate carboxylase compare
Atu2264 -6.5 -13.2 2-isopropylmalate synthase compare
Atu1141 -6.4 -7.6 Phosphoribosylglycinamide synthetase compare
Atu4665 -6.4 -6.2 alpha-galactosidase conserved
Atu2718 -6.3 -7.5 homoserine O-succinyltransferase compare
Atu2036 -6.3 -12.8 acetolactate synthase III, large subunit compare
Atu3706 -6.3 -8.6 D-3-phosphoglycerate dehydrogenase compare
Atu2650 -6.2 -12.7 glycerol-3-phosphate dehydrogenase compare
Atu0298 -6.2 -7.3 orotidine 5 compare
Atu0679 -6.1 -7.2 ATP phosphoribosyltransferase compare
Atu3707 -6.0 -4.2 phosphoserine aminotransferase compare
Atu0399 -5.9 -5.8 dihydroorotase compare
Atu3885 -5.9 -9.0 inositol monophosphatase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1588 -5.8 -8.9 homoserine dehydrogenase compare
Atu4662 -5.8 -9.2 oligopeptide ABC transporter permease conserved
Atu4660 -5.8 -13.0 alpha-galactosidase conserved
Atu0537 -5.8 -5.7 histidinol dehydrogenase compare
Atu0876 -5.8 -4.0 superoxide dismutase compare
Atu0400 -5.8 -6.9 orotate phosphoribosyltransferase compare
Atu1688 -5.7 -5.5 indole-3-glycerol-phosphate synthase compare
Atu2747 -5.7 -12.0 hypothetical protein compare
Atu4659 -5.6 -8.5 AraC family transcriptional regulator conserved
Atu3783 -5.5 -17.8 glutamate synthase subunit beta compare
Atu2015 -5.5 -15.5 aminotransferase compare
Atu0678 -5.5 -5.4 histidyl-tRNA synthetase compare
Atu1850 -5.5 -5.4 phosphoribosylformylglycinamidine synthetase II compare
Atu0486 -5.4 -6.6 dihydroorotate dehydrogenase compare
Atu4664 -5.4 -14.1 oligopeptide ABC transporter ATPase conserved
Atu2040 -5.3 -6.3 phosphoserine phosphatase compare
Atu3755 -5.3 -6.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4661 -5.2 -20.9 alpha-galactoside ABC transporter substrate-binding protein conserved
Atu1844 -5.2 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu3483 -5.0 -9.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0043 -5.0 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu1075 -5.0 -9.5 amidophosphoribosyltransferase compare
Atu3482 -4.9 -12.0 pantoate--beta-alanine ligase compare
Atu0041 -4.9 -3.3 glutamine amidotransferase compare
Atu0647 -4.9 -6.7 phosphoribosylamine--glycine ligase compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu3469 -4.7 -3.2 phosphoglyceromutase compare
Atu3784 -4.7 -26.4 glutamate synthase large subunit compare
Atu1307 -4.7 -7.8 dihydroorotase compare
Atu1845 -4.7 -6.0 phosphoribosylformylglycinamidine synthase I compare
Atu0641 -4.5 -5.2 hypothetical protein compare
Atu1686 -4.4 -17.9 peptidyl-prolyl cis-trans isomerse D compare
Atu2790 -4.1 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu1456 -4.1 -13.7 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0792 -4.0 -8.0 hypothetical protein compare
Atu3739 -3.9 -3.3 phosphoglycerate kinase compare
Atu2548 -3.9 -19.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu6098 -3.8 -1.7 transcriptional regulator, HTH family compare
Atu4098 -3.7 -14.4 quinolinate synthetase compare
Atu1454 -3.6 -9.5 siroheme synthase compare
Atu1030 -3.4 -2.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0030 -3.2 -2.8 phosphocarrier protein HPr compare
Atu3731 -3.1 -7.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu0401 -3.1 -7.4 fructokinase compare
Atu1589 -3.0 -7.7 aminotransferase, class I compare
Atu4096 -3.0 -9.9 nicotinate-nucleotide pyrophosphorylase compare
Atu4097 -3.0 -14.5 L-aspartate oxidase compare
Atu2155 -2.9 -18.0 methionine synthase compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu6114 -2.8 -3.7 hypothetical protein compare
Atu3999 -2.8 -3.8 dithiobiotin synthetase compare
Atu1810 -2.6 -2.2 hypothetical protein compare
Atu1462 -2.6 -14.1 glycine cleavage system protein P2 compare
Atu2205 -2.6 -4.7 transcriptional regulator, MarR family compare
Atu1455 -2.5 -3.2 hypothetical protein compare
Atu1463 -2.5 -6.2 glycine cleavage system component H compare
Atu1464 -2.5 -7.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu0029 -2.4 -5.3 S-adenosylhomocysteine hydrolase compare
Atu1620 -2.3 -10.3 triosephosphate isomerase compare
Atu1446 -2.3 -4.0 two component response regulator compare
Atu0723 -2.2 -2.5 FAD dependent oxidoreductase compare
Atu1748 -2.2 -10.5 NIFU-like protein compare
Atu1359 -2.1 -1.8 dnaK deletion suppressor protein compare
Atu3997 -2.1 -12.9 biotin synthetase compare
Atu0704 -2.0 -11.7 2-dehydro-3-deoxygalactonate kinase compare
Atu0536 -2.0 -6.3 hypothetical protein compare
Atu2569 -1.9 -12.5 thiamine biosynthesis protein compare
Atu0803 -1.9 -12.8 pyruvate,orthophosphate dikinase compare
Atu1604 -1.8 -11.8 poly-beta-hydroxybutyrate synthase compare
Atu0346 -1.8 -5.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0598 -1.8 -7.9 phosphogluconate dehydratase compare
Atu3290 -1.8 -9.9 phosphomethylpyrimidine kinase compare
Atu1685 -1.7 -1.6 hypothetical protein compare
Atu3219 -1.7 -9.5 dihydroxy-acid dehydratase compare
Atu4711 -1.7 -5.7 two component sensor kinase compare
Atu1457 -1.7 -2.0 hypothetical protein compare
Atu3289 -1.7 -3.4 thiamine-phosphate pyrophosphorylase compare
Atu0322 -1.7 -6.0 enoyl CoA hydratase compare
Atu8115 -1.6 -3.8 Hypothetical Protein compare
Atu3288 -1.5 -4.9 hydroxyethylthiazole kinase compare
Atu3998 -1.5 -10.1 8-amino-7-oxononanoate synthase compare
Atu4000 -1.5 -9.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu4773 -1.5 -1.5 two component response regulator compare
Atu0434 -1.4 -3.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4001 -1.4 -5.8 3-oxoacyl-ACP synthase compare
Atu1677 -1.4 -3.7 queuine tRNA-ribosyltransferase compare
Atu2801 -1.4 -5.0 precorrin-2 C20 methyltransferase compare
Atu8088 -1.4 -2.2 hypothetical protein compare
Atu2809 -1.3 -7.7 cobalamin biosynthesis protein compare
Atu0422 -1.3 -2.1 ABC transporter, membrane spanning protein compare
Atu1891 -1.3 -4.0 cobalamin biosynthesis protein compare
Atu0895 -1.3 -3.1 ABC transporter, substrate binding protein compare
Atu5142 -1.2 -1.6 hypothetical protein compare
Atu2805 -1.2 -5.8 cobalamin synthesis protein compare
Atu2554 -1.2 -2.3 lysyl-tRNA synthetase compare
Atu2803 -1.2 -4.1 Cobalamin biosynthesis associated protein compare
Atu1113 -1.2 -4.6 dehydrogenase compare
Atu4075 -1.2 -5.8 glycogen synthase compare
Atu4173 -1.1 -2.9 phosphoenolpyruvate-protein phosphotransferase compare
Atu2804 -1.1 -7.4 cobaltochelatase subunit compare
Atu1028 -1.1 -2.5 hypothetical protein compare
Atu2808 -1.1 -5.1 cobyric acid synthase compare
Atu0705 -1.1 -3.8 3-oxoacyl-(acyl carrier protein) reductase compare
Atu2209 -1.1 -2.8 pyrroline-5-carboxylate reductase compare
Atu0361 -1.1 -1.4 transcriptional regulator compare
Atu2800 -1.1 -3.9 precorrin-3B C17-methyltransferase compare
Atu3613 -1.1 -4.3 hypothetical protein compare
Atu0593 -1.0 -5.4 ABC transporter, membrane spanning protein compare
Atu2770 -1.0 -4.9 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2127 -1.0 -4.8 L-carnitine dehydratase compare
Atu0687 -1.0 -2.3 hypothetical protein compare
Atu2793 -1.0 -4.3 cobyrinic acid a,c-diamide synthase compare
Atu1149 -1.0 -1.6 adenylate cyclase compare
Atu0594 -1.0 -6.2 alpha-glucosidase compare
Atu2798 -1.0 -3.5 precorrin-6y methyltransferase compare
Atu1542 -1.0 -4.9 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1904 -1.0 -4.1 transcriptional regulator compare
Atu0368 -0.9 -3.1 tRNA pseudouridine synthase I compare
Atu2802 -0.9 -4.6 precorrin-8X methylmutase compare
Atu1163 -0.9 -2.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3908 -0.8 -5.4 GntR family transcriptional regulator compare
Atu3730 -0.8 -1.3 hypothetical protein compare
Atu4176 -0.8 -3.7 hypothetical protein compare
Atu3496 -0.8 -3.4 hypothetical protein compare
Atu2352 -0.8 -1.2 hypothetical protein compare
Atu1339 -0.8 -1.9 ribonuclease E compare
Atu2796 -0.8 -3.4 precorrin-4 C11-methyltransferase compare
Atu0189 -0.8 -2.5 ABC transporter, membrane spanning protein (peptide) compare
Atu3732 -0.8 -4.8 hemolysin compare
Atu5430 -0.8 -0.9 hypothetical protein compare
Atu0503 -0.8 -5.8 enoyl-CoA hydratase compare
Atu5125 -0.8 -2.6 GntR family transcriptional regulator compare
Atu0533 -0.8 -3.1 putative inhibitor of septum formation compare
Atu3727 -0.8 -1.9 hypothetical protein compare
Atu1801 -0.8 -1.8 hypothetical protein compare
Atu2484 -0.8 -1.4 hypothetical protein compare
Atu0047 -0.7 -5.5 malate synthase G compare
Atu2799 -0.7 -2.8 precorrin-6x reductase compare
Atu1572 -0.7 -3.6 hydrolase compare
Atu2640 -0.7 -1.9 hypothetical protein compare
Atu0592 -0.7 -3.2 ABC transporter, membrane spanning protein compare
Atu3518 -0.7 -4.4 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu1774 -0.7 -3.9 ABC transporter, substrate binding protein (peptide) compare
Atu4317 -0.7 -2.8 TetR family transcriptional regulator compare
Atu2123 -0.7 -2.6 methylenetetrahydrofolate reductase compare
Atu0976 -0.7 -0.8 cycL protein compare
Atu1629 -0.7 -1.1 transcriptional regulator, ArsR family compare
Atu5164 -0.7 -0.7 type IV secretion protein AvhB3 compare
Atu0956 -0.7 -1.6 phage prohead protease compare
Atu4187 -0.7 -1.3 tRNA-Met compare
Atu3633 -0.7 -4.4 hypothetical protein compare
Atu1546 -0.7 -2.4 transcriptional regulator, MerR family compare
Atu3697 -0.7 -2.3 ATP-dependent protease LA 2 compare
Atu2662 -0.7 -1.2 acetyltransferase compare
Atu4108 -0.7 -4.6 ribonuclease D compare
Atu0983 -0.7 -1.5 hypothetical protein compare
Atu4232 -0.7 -3.5 GntR family transcriptional regulator compare
Atu1125 -0.7 -2.6 ABC transporter, membrane spanning protein compare
Atu0184 -0.6 -1.8 glucokinase compare
Atu2795 -0.6 -3.6 cobalamin biosynthetic protein compare
Atu4019 -0.6 -2.7 two component response regulator compare
Atu3750 -0.6 -1.8 thiamine-phosphate pyrophosphorylase compare
Atu1445 -0.6 -1.6 two component sensor kinase compare
Atu0188 -0.6 -1.4 ABC transporter, membrane spanning protein (peptide) compare
Atu3712 -0.6 -1.3 hypothetical protein compare
Atu1354 -0.6 -0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0501 -0.6 -4.3 acyl-CoA dehydrogenase compare
Atu2532 -0.6 -1.7 transcriptional regulator, MarR family compare
Atu4346 -0.6 -2.4 hypothetical protein compare
Atu2511 -0.6 -2.6 D-alanine aminotransferase compare
Atu3510 -0.6 -1.9 amidohydrolase compare
Atu0538 -0.6 -2.1 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Raffinose pentahydrate in Agrobacterium fabrum C58

For carbon source D-Raffinose pentahydrate across organisms