| | gene | name | fitness | t score | description | |
|---|
| b0462 | acrB | -2.9 | -8.9 | multidrug efflux system protein (NCBI) | compare |
| b0463 | acrA | -2.9 | -5.8 | multidrug efflux system (NCBI) | compare |
| b3199 | yrbK | -2.9 | -2.0 | hypothetical protein (NCBI) | compare |
| b1129 | phoQ | -2.8 | -5.3 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b1130 | phoP | -2.8 | -4.2 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b3193 | yrbD | -2.6 | -6.8 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b3035 | tolC | -2.6 | -3.6 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b3194 | yrbE | -2.6 | -7.7 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b3082 | ygjM | -2.5 | -1.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2188 | yejM | -2.5 | -4.9 | predicted hydrolase, inner membrane (NCBI) | compare |
| b2346 | vacJ | -2.4 | -5.0 | predicted lipoprotein (NCBI) | compare |
| b1855 | lpxM | -2.4 | -4.2 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b0737 | tolQ | -2.4 | -2.3 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b3632 | rfaQ | -2.3 | -11.6 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3195 | yrbF | -2.3 | -6.9 | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b3465 | yhhF | -2.3 | -4.0 | predicted methyltransferase (NCBI) | compare |
| b1677 | lpp | -2.3 | -2.5 | murein lipoprotein (NCBI) | compare |
| b0957 | ompA | -2.2 | -3.8 | outer membrane protein A (3a;II*;G;d) (NCBI) | compare |
| b3627 | rfaI | -2.2 | -10.7 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b3021 | ygiT | -2.2 | -2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3191 | yrbB | -2.2 | -5.7 | orf, hypothetical protein (VIMSS) | compare |
| b2017 | yefM | -2.1 | -1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3192 | yrbC | -2.1 | -5.9 | predicted ABC-type organic solvent transporter (NCBI) | compare |
| b0178 | hlpA | -2.0 | -2.6 | periplasmic chaperone (NCBI) | compare |
| b0877 | ybjX | -2.0 | -5.3 | hypothetical protein (NCBI) | compare |
| b2571 | rseB | -2.0 | -4.5 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b1651 | gloA | -2.0 | -2.7 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b4608 | ryfC | -1.9 | -2.6 | Novel sRNA, function unknown (RefSeq) | compare |
| b4414 | tff | -1.9 | -2.7 | unknown RNA (NCBI) | compare |
| b3163 | nlpI | -1.8 | -2.9 | hypothetical protein (NCBI) | compare |
| b1830 | prc | -1.8 | -3.4 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b0658 | ybeX | -1.8 | -5.8 | predicteed ion transport (NCBI) | compare |
| b4546 | ypeB | -1.8 | -1.5 | hypothetical protein (NCBI) | compare |
| b1531 | marA | -1.8 | -2.8 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b3631 | rfaG | -1.8 | -8.7 | glucosyltransferase I (NCBI) | compare |
| b2174 | b2174 | -1.7 | -5.4 | orf, hypothetical protein (VIMSS) | compare |
| b1413 | hrpA | -1.7 | -5.4 | ATP-dependent helicase (RefSeq) | conserved |
| b1685 | ydiH | -1.7 | -1.7 | predicted protein (RefSeq) | compare |
| b3784 | rfe | -1.7 | -7.5 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b2617 | smpA | -1.7 | -2.6 | small membrane protein A (VIMSS) | compare |
| b2055 | wcaE | -1.6 | -3.1 | predicted glycosyl transferase (NCBI) | compare |
| b4172 | hfq | -1.6 | -1.1 | RNA-binding protein Hfq (NCBI) | compare |
| b3636 | rpmG | -1.6 | -1.0 | 50S ribosomal protein L33 (NCBI) | compare |
| b3764 | yifE | -1.6 | -3.2 | hypothetical protein (NCBI) | compare |
| b4370 | leuQ | -1.6 | -1.7 | tRNA-Leu (NCBI) | compare |
| b4179 | vacB | -1.6 | -4.4 | putative enzyme (VIMSS) | compare |
| b3625 | rfaY | -1.6 | -7.1 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b1380 | ldhA | -1.6 | -1.6 | D-lactate dehydrogenase (NCBI) | compare |
| b1286 | rnb | -1.5 | -1.4 | exoribonuclease II (NCBI) | compare |
| b4450 | arcZ | -1.5 | -2.6 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b0145 | dksA | -1.5 | -2.4 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b2064 | asmA | -1.5 | -4.5 | predicted assembly protein (NCBI) | compare |
| b3628 | rfaB | -1.5 | -8.3 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b2572 | rseA | -1.4 | -3.1 | anti-sigma factor (NCBI) | compare |
| b3121 | yhaC | -1.4 | -1.8 | hypothetical protein (NCBI) | compare |
| b1104 | ycfL | -1.4 | -1.9 | hypothetical protein (NCBI) | compare |
| b1183 | umuD | -1.4 | -1.5 | DNA polymerase V, subunit D (NCBI) | compare |
| b0741 | pal | -1.4 | -1.3 | peptidoglycan-associated outer membrane lipoprotein (NCBI) | compare |
| b1295 | ymjA | -1.4 | -1.7 | hypothetical protein (NCBI) | compare |
| b0740 | tolB | -1.4 | -2.0 | translocation protein TolB precursor (NCBI) | compare |
| b3787 | rffD | -1.4 | -6.4 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b0623 | cspE | -1.4 | -1.7 | cold shock protein E (NCBI) | compare |
| b3341 | rpsG | -1.3 | -1.4 | 30S ribosomal protein S7 (NCBI) | compare |
| b0802 | ybiJ | -1.3 | -1.9 | hypothetical protein (NCBI) | compare |
| b3842 | rfaH | -1.3 | -2.3 | transcriptional activator RfaH (NCBI) | compare |
| b1684 | sufA | -1.3 | -2.0 | iron-sulfur cluster assembly scaffold protein (NCBI) | compare |
| b2807 | ygdD | -1.3 | -2.6 | conserved inner membrane protein (NCBI) | compare |
| b2532 | yfhQ | -1.3 | -2.3 | predicted methyltransferase (NCBI) | compare |
| b3649 | rpoZ | -1.3 | -1.5 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b3387 | dam | -1.3 | -6.8 | DNA adenine methylase (NCBI) | compare |
| b1831 | proQ | -1.3 | -2.6 | putative solute/DNA competence effector (NCBI) | compare |
| b3207 | yrbL | -1.3 | -3.4 | hypothetical protein (NCBI) | compare |
| b0440 | hupB | -1.2 | -3.1 | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | compare |
| b1347 | ydaC | -1.2 | -1.8 | Rac prophage; predicted protein (NCBI) | compare |
| b3961 | oxyR | -1.2 | -6.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0739 | tolA | -1.2 | -1.6 | cell envelope integrity inner membrane protein TolA (NCBI) | compare |
| b0912 | ihfB | -1.2 | -2.1 | integration host factor subunit beta (NCBI) | compare |
| b0641 | rlpB | -1.2 | -1.7 | minor lipoprotein (NCBI) | compare |
| b2634 | yfjR | -1.2 | -2.1 | CP4-57 prophage; predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0738 | tolR | -1.2 | -1.5 | membrane spanning protein in TolA-TolQ-TolR complex (NCBI) | compare |
| b0222 | lpcA | -1.2 | -1.1 | phosphoheptose isomerase (NCBI) | compare |
| b4550 | yhdL | -1.2 | -3.0 | hypothetical protein (NCBI) | compare |
| b4176 | yjeT | -1.2 | -2.3 | conserved inner membrane protein (NCBI) | compare |
| b4416 | rybA | -1.2 | -1.6 | unknown RNA (NCBI) | compare |
| b2512 | yfgL | -1.2 | -2.3 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3652 | recG | -1.1 | -4.7 | ATP-dependent DNA helicase (NCBI) | compare |
| b3052 | rfaE | -1.1 | -2.2 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b1213 | ychQ | -1.1 | -2.1 | predicted transcriptional regulator (NCBI) | compare |
| b3786 | rffE | -1.1 | -6.3 | UDP-N-acetyl glucosamine-2-epimerase (NCBI) | compare |
| b2558 | mltF | -1.1 | -5.8 | predicted periplasmic binding protein/transglycosylase (RefSeq) | compare |
| b1448 | yncA | -1.1 | -1.4 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b0880 | cspD | -1.1 | -1.0 | cold shock protein homolog (NCBI) | compare |
| b0819 | ybiS | -1.1 | -4.1 | hypothetical protein (NCBI) | compare |
| b1727 | yniC | -1.1 | -1.6 | predicted hydrolase (NCBI) | compare |
| b0049 | apaH | -1.1 | -2.9 | diadenosinetetraphosphatase (NCBI) | compare |
| b1085 | b1085 | -1.1 | -1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3630 | rfaP | -1.1 | -4.5 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b3785 | wzzE | -1.1 | -6.1 | putative transport protein (VIMSS) | compare |
| b2494 | yfgC | -1.0 | -3.8 | predicted peptidase (NCBI) | compare |
| b0759 | galE | -1.0 | -2.9 | UDP-galactose-4-epimerase (VIMSS) | compare |
| b3026 | qseC | -1.0 | -2.0 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b0200 | gmhB | -1.0 | -0.7 | hypothetical protein (NCBI) | compare |
| b1182 | hlyE | -1.0 | -1.7 | hemolysin E (VIMSS) | compare |
| b3206 | npr | -1.0 | -2.9 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4655 | ythA | -1.0 | -1.3 | expressed protein (RefSeq) | compare |
| b1103 | ycfF | -1.0 | -0.8 | orf, hypothetical protein (VIMSS) | compare |
| b1573 | ydfC | -1.0 | -1.4 | Qin prophage; predicted protein (RefSeq) | compare |
| b1257 | yciE | -1.0 | -1.8 | hypothetical protein (NCBI) | compare |
| b3229 | sspA | -1.0 | -1.9 | stringent starvation protein A (NCBI) | compare |
| b1236 | galU | -1.0 | -2.2 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b4529 | ydbJ | -1.0 | -0.9 | hypothetical protein (NCBI) | compare |
| b2829 | ptsP | -0.9 | -4.8 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2831 | mutH | -0.9 | -2.7 | DNA mismatch repair protein (NCBI) | compare |
| b1863 | ruvC | -0.9 | -1.8 | Holliday junction resolvase (NCBI) | compare |
| b3609 | secB | -0.9 | -2.3 | export protein SecB (NCBI) | compare |
| b3198 | kdsC | -0.9 | -1.8 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b1992 | cobS | -0.9 | -1.6 | cobalamin synthase (NCBI) | compare |
| b1160 | elbA | -0.9 | -1.4 | hypothetical protein (NCBI) | compare |
| b2940 | yqgC | -0.9 | -2.4 | hypothetical protein (NCBI) | compare |
| b0082 | mraW | -0.9 | -1.6 | S-adenosyl-methyltransferase (NCBI) | compare |
| b2168 | fruK | -0.9 | -1.3 | 1-phosphofructokinase (NCBI) | compare |
| b1984 | asnW | -0.9 | -0.8 | tRNA-Asn (NCBI) | compare |
| b0014 | dnaK | -0.9 | -0.8 | molecular chaperone DnaK (NCBI) | compare |
| b1936 | intG | -0.9 | -1.4 | predicted defective phage integrase (pseudogene) (RefSeq) | compare |
| b4631 | ykgQ | -0.9 | -1.1 | no description | compare |
| b1273 | yciN | -0.9 | -0.8 | hypothetical protein (NCBI) | compare |
| b2846 | yqeH | -0.9 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1848 | yebG | -0.9 | -0.7 | conserved protein regulated by LexA (NCBI) | compare |
| b0605 | ahpC | -0.9 | -2.2 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b4045 | yjbJ | -0.9 | -1.5 | predicted stress response protein (NCBI) | compare |
| b0081 | mraZ | -0.9 | -2.4 | hypothetical protein (NCBI) | compare |
| b3741 | gidA | -0.9 | -3.0 | glucose-inhibited division protein A (NCBI) | compare |
| b2279 | nuoK | -0.9 | -1.3 | NADH dehydrogenase subunit K (NCBI) | compare |
| b0053 | surA | -0.9 | -1.0 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b2317 | dedA | -0.9 | -1.7 | conserved inner membrane protein (NCBI) | compare |
| b0405 | queA | -0.9 | -2.9 | S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) | compare |
| b3620 | rfaF | -0.9 | -1.7 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3621 | rfaC | -0.8 | -1.4 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b1258 | yciF | -0.8 | -2.2 | hypothetical protein (NCBI) | compare |
| b1499 | ydeO | -0.8 | -0.9 | predicted DNA-binding transcriptional acfivator (NCBI) | compare |
| b0471 | ybaB | -0.8 | -1.5 | hypothetical protein (NCBI) | compare |
| b3101 | yqjF | -0.8 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3417 | malP | -0.8 | -4.7 | maltodextrin phosphorylase (NCBI) | compare |
| b3706 | trmE | -0.8 | -2.7 | tRNA modification GTPase (NCBI) | compare |
| b3094 | exuR | -0.8 | -2.4 | negative regulator of exu regulon, exuT, uxaAC, and uxuB (VIMSS) | compare |
| b2276 | nuoN | -0.8 | -2.3 | NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq) | compare |
| b1609 | rstB | -0.8 | -2.0 | sensory histidine kinase in two-component regulatory system with RstA (NCBI) | compare |
| b0862 | artQ | -0.8 | -1.6 | arginine transporter subunit (NCBI) | compare |
| b1307 | pspD | -0.8 | -1.0 | peripheral inner membrane phage-shock protein (NCBI) | compare |
| b2283 | nuoG | -0.8 | -2.8 | NADH:ubiquinone oxidoreductase, chain G (RefSeq) | compare |
| b0436 | tig | -0.8 | -3.3 | trigger factor (NCBI) | compare |
| b1919 | yedO | -0.8 | -1.7 | putative 1-aminocyclopropane-1-carboxylate deaminase (VIMSS) | compare |
| b3811 | xerC | -0.8 | -1.4 | site-specific tyrosine recombinase XerC (NCBI) | compare |
| b1643 | ydhI | -0.8 | -2.4 | predicted inner membrane protein (NCBI) | compare |
| b0696 | kdpC | -0.8 | -1.3 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b1742 | b1742 | -0.8 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2576 | srmB | -0.8 | -1.4 | ATP-dependent RNA helicase (NCBI) | compare |
| b2469 | narQ | -0.8 | -3.4 | sensory histidine kinase in two-component regulatory system with NarP (NarL) (NCBI) | compare |
| b4202 | rpsR | -0.8 | -0.7 | 30S ribosomal protein S18 (NCBI) | compare |
| b0677 | nagA | -0.8 | -2.6 | N-acetylglucosamine-6-phosphate deacetylase (NCBI) | compare |
| b1946 | fliN | -0.8 | -1.7 | flagellar motor switch protein (NCBI) | compare |
| b3032 | cpdA | -0.8 | -3.2 | cyclic 3',5'-adenosine monophosphate phosphodiesterase (NCBI) | compare |
| b2217 | rcsB | -0.8 | -2.7 | DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) | compare |
| b3237 | argR | -0.7 | -2.0 | arginine repressor (NCBI) | compare |
| b1920 | fliY | -0.7 | -1.1 | cystine transporter subunit (NCBI) | compare |
| b3293 | yhdN | -0.7 | -2.3 | hypothetical protein (NCBI) | compare |
| b1434 | ydcN | -0.7 | -0.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3164 | pnp | -0.7 | -1.2 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b0249 | ykfF | -0.7 | -1.2 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1271 | yciK | -0.7 | -1.3 | short chain dehydrogenase (NCBI) | compare |
| b1278 | pgpB | -0.7 | -1.0 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b0232 | yafN | -0.7 | -0.4 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1418 | cybB | -0.7 | -1.5 | cytochrome b(561) (VIMSS) | compare |
| b1252 | tonB | -0.7 | -1.3 | membrane spanning protein in TonB-ExbB-ExbD complex (NCBI) | compare |
| b2362 | yfdS | -0.7 | -2.1 | CPS-53 (KpLE1) prophage; predicted protein (NCBI) | compare |
| b4396 | rob | -0.7 | -3.5 | DNA-binding transcriptional activator (NCBI) | compare |
| b0144 | yadB | -0.7 | -2.8 | glutamyl-Q tRNA(Asp) synthetase (RefSeq) | compare |
| b4592 | yccB | -0.7 | -0.9 | hypothetical protein (RefSeq) | compare |
| b4402 | yjjY | -0.7 | -0.9 | hypothetical protein (NCBI) | compare |
| b1486 | ddpB | -0.7 | -1.4 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b4178 | yjeB | -0.7 | -2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1796 | yoaG | -0.7 | -1.6 | hypothetical protein (NCBI) | compare |
| b4545 | ypdJ | -0.7 | -0.9 | no description | compare |
| b1382 | ynbE | -0.7 | -0.9 | predicted lipoprotein (NCBI) | compare |
| b4000 | hupA | -0.7 | -1.6 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b4587 | insN | -0.7 | -2.1 | no description | compare |
| b1728 | ydjM | -0.7 | -1.4 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b3210 | arcB | -0.7 | -3.0 | hybrid sensory histidine kinase in two-component regulatory system with ArcA (NCBI) | compare |
| b1729 | ydjN | -0.7 | -1.5 | predicted transporter (NCBI) | compare |
| b4627 | ykfL | -0.7 | -1.3 | no description | compare |
| b3027 | ygiZ | -0.7 | -1.4 | conserved inner membrane protein (NCBI) | compare |
| b1493 | gadB | -0.7 | -0.9 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b4375 | prfC | -0.7 | -2.6 | peptide chain release factor 3 (NCBI) | compare |
| b3427 | yzgL | -0.7 | -1.7 | orf, hypothetical protein (VIMSS) | compare |
| b1442 | ydcU | -0.7 | -2.1 | predicted spermidine/putrescine transporter subunit (NCBI) | compare |
| b3463 | ftsE | -0.7 | -1.3 | predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI) | compare |
| b0613 | citG | -0.7 | -2.0 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b1640 | ydhH | -0.7 | -1.5 | anhydro-N-acetylmuramic acid kinase (NCBI) | compare |
| b3039 | ygiD | -0.7 | -2.3 | predicted dioxygenase (RefSeq) | compare |
| b3931 | hslU | -0.7 | -3.9 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |