Experiment set2IT033 for Agrobacterium fabrum C58

Compare to:

L-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
Atu0432 -6.1 -9.3 O-succinylhomoserine sulfhydrylase compare
Atu3755 -6.1 -4.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2791 -6.0 -8.2 3-isopropylmalate dehydrogenase compare
Atu0679 -5.6 -6.6 ATP phosphoribosyltransferase compare
Atu0099 -5.6 -12.4 prephenate dehydratase compare
Atu0017 -5.5 -3.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2709 -5.4 -20.2 3-isopropylmalate dehydratase, large subunit compare
Atu1845 -5.4 -6.7 phosphoribosylformylglycinamidine synthase I compare
Atu0298 -5.3 -8.1 orotidine 5 compare
Atu2264 -5.2 -13.8 2-isopropylmalate synthase compare
Atu0678 -5.1 -6.1 histidyl-tRNA synthetase compare
Atu3707 -5.1 -5.0 phosphoserine aminotransferase compare
Atu0537 -5.1 -6.1 histidinol dehydrogenase compare
Atu1688 -5.0 -7.3 indole-3-glycerol-phosphate synthase compare
Atu1750 -4.9 -6.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu0399 -4.9 -8.1 dihydroorotase compare
Atu3754 -4.8 -7.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2289 -4.7 -20.7 anthranilate synthase component I and II compare
Atu1850 -4.7 -4.4 phosphoribosylformylglycinamidine synthetase II compare
Atu1075 -4.7 -9.5 amidophosphoribosyltransferase compare
Atu2036 -4.7 -17.6 acetolactate synthase III, large subunit compare
Atu0041 -4.6 -3.1 glutamine amidotransferase compare
Atu1030 -4.5 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0039 -4.5 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu1205 -4.5 -15.9 threonine dehydratase compare
Atu0486 -4.4 -7.3 dihydroorotate dehydrogenase compare
Atu1687 -4.4 -13.7 anthranilate phosphoribosyltransferase compare
Atu0038 -4.4 -6.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1141 -4.4 -7.0 Phosphoribosylglycinamide synthetase compare
Atu0062 -4.3 -14.2 transcriptional regulator, ROK family compare
Atu0400 -4.3 -6.1 orotate phosphoribosyltransferase compare
Atu1308 -4.2 -7.2 aspartate carbamoyl transferase catalytic subunit compare
Atu0647 -4.1 -8.3 phosphoribosylamine--glycine ligase compare
Atu2040 -4.1 -7.4 phosphoserine phosphatase compare
Atu0346 -3.9 -5.6 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1307 -3.9 -8.1 dihydroorotase compare
Atu2790 -3.8 -2.6 3-isopropylmalate dehydratase, small subunit compare
Atu2718 -3.7 -9.6 homoserine O-succinyltransferase compare
Atu2650 -3.7 -12.6 glycerol-3-phosphate dehydrogenase compare
Atu0014 -3.6 -10.3 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
Atu3482 -3.6 -9.2 pantoate--beta-alanine ligase compare
Atu0030 -3.4 -2.5 phosphocarrier protein HPr compare
Atu1140 -3.4 -7.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3885 -3.3 -10.7 inositol monophosphatase compare
Atu1844 -3.2 -5.3 Phosphoribosylformylglycinamidine synthetase compare
Atu1588 -3.0 -7.4 homoserine dehydrogenase compare
Atu0043 -2.7 -2.8 imidazoleglycerol-phosphate dehydratase compare
Atu3783 -2.6 -16.0 glutamate synthase subunit beta compare
Atu0040 -2.6 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2155 -2.6 -17.4 methionine synthase compare
Atu0047 -2.6 -16.1 malate synthase G compare
Atu1359 -2.6 -1.9 dnaK deletion suppressor protein compare
Atu2015 -2.5 -11.8 aminotransferase compare
Atu2239 -2.5 -4.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu4502 -2.4 -9.9 cobalamin synthesis protein compare
Atu1456 -2.2 -10.0 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1286 -2.2 -6.9 hypothetical protein compare
Atu0665 -2.2 -9.9 glycolate oxidase subunit compare
Atu3469 -2.2 -3.6 phosphoglyceromutase compare
Atu1463 -2.2 -8.9 glycine cleavage system component H compare
Atu0769 -2.1 -2.6 protoheme IX farnesyltransferase compare
Atu1517 -2.1 -6.0 hypothetical protein compare
Atu1464 -2.1 -7.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu3817 -2.1 -9.9 dehydratase compare
Atu3784 -2.0 -15.6 glutamate synthase large subunit compare
Atu1462 -2.0 -13.1 glycine cleavage system protein P2 compare
Atu0035 -2.0 -10.9 phosphoenolpyruvate carboxykinase compare
Atu0664 -2.0 -9.8 transcriptional regulator, LysR family compare
Atu1454 -2.0 -8.1 siroheme synthase compare
Atu0667 -1.9 -10.8 glycolate oxidase iron-sulfur subunit compare
Atu2237 -1.9 -6.3 cytochrome c1 compare
Atu0876 -1.8 -2.2 superoxide dismutase compare
Atu2821 -1.8 -4.0 transcriptional regulator, GntR family compare
Atu0322 -1.8 -5.8 enoyl CoA hydratase compare
Atu0101 -1.8 -4.9 cytochrome c compare
Atu0770 -1.8 -7.1 cytochrome C oxidase assembly protein compare
Atu1028 -1.7 -3.3 hypothetical protein compare
Atu4505 -1.7 -7.6 LacI family transcriptional regulator compare
Atu0666 -1.7 -5.8 glycolate oxidase subunit compare
Atu3483 -1.7 -6.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0846 -1.6 -5.0 transcriptional regulator, MarR family compare
Atu1074 -1.6 -10.8 NAD/NADP dependent oxidoreductase compare
Atu2238 -1.6 -6.0 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1516 -1.6 -6.2 hypothetical protein compare
Atu3598 -1.6 -3.8 thiol:disulfide interchange protein compare
Atu0768 -1.5 -9.3 cytochrome-c oxidase chain I compare
Atu1242 -1.5 -8.6 cytochrome oxidase assembly factor compare
Atu3706 -1.5 -8.0 D-3-phosphoglycerate dehydrogenase compare
Atu0031 -1.5 -1.8 PTS system, IIA component compare
Atu4029 -1.5 -4.4 gluconolactonase compare
Atu0912 -1.5 -2.1 Na+/H+ antiporter compare
Atu3240 -1.5 -11.0 ROK family transcriptional regulator compare
Atu0767 -1.5 -5.0 cytochrome c oxidase subunit II compare
Atu3739 -1.4 -3.5 phosphoglycerate kinase compare
Atu5125 -1.4 -4.0 GntR family transcriptional regulator compare
Atu1455 -1.4 -3.5 hypothetical protein compare
Atu6098 -1.4 -1.0 transcriptional regulator, HTH family compare
Atu4711 -1.3 -4.5 two component sensor kinase compare
Atu4685 -1.3 -7.5 LacI family transcriptional regulator compare
Atu8054 -1.3 -0.8 hypothetical protein compare
Atu1457 -1.3 -2.1 hypothetical protein compare
Atu3008 -1.3 -1.4 hypothetical protein compare
Atu0119 -1.3 -1.4 hypothetical protein compare
Atu4501 -1.3 -7.7 hypothetical protein compare
Atu0434 -1.3 -2.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4364 -1.3 -8.5 LacI family transcriptional regulator compare
Atu4514 -1.3 -3.0 RpiR family transcriptional regulator compare
Atu3337 -1.3 -8.5 LacI family transcriptional regulator compare
Atu5142 -1.3 -2.0 hypothetical protein compare
Atu1546 -1.3 -5.0 transcriptional regulator, MerR family compare
Atu4773 -1.3 -1.4 two component response regulator compare
Atu4096 -1.2 -6.2 nicotinate-nucleotide pyrophosphorylase compare
Atu3219 -1.2 -8.2 dihydroxy-acid dehydratase compare
Atu6114 -1.2 -1.2 hypothetical protein compare
Atu0771 -1.2 -4.8 cytochrome c oxidase subunit III compare
Atu4098 -1.2 -8.1 quinolinate synthetase compare
Atu2822 -1.2 -8.5 D-galactarate dehydratase compare
Atu2433 -1.2 -1.4 hypothetical protein compare
Atu3813 -1.2 -5.5 3-oxoacyl-ACP reductase compare
Atu2442 -1.1 -1.6 hypothetical protein compare
Atu6045 -1.1 -1.6 replication protein C compare
Atu0361 -1.1 -2.1 transcriptional regulator compare
Atu0189 -1.1 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1748 -1.1 -5.4 NIFU-like protein compare
Atu1564 -1.1 -7.0 hypothetical protein compare
Atu1589 -1.0 -4.4 aminotransferase, class I compare
Atu1810 -1.0 -1.3 hypothetical protein compare
Atu3280 -1.0 -6.2 GntR family transcriptional regulator compare
Atu5513 -1.0 -1.4 cold shock protein compare
Atu0536 -1.0 -4.4 hypothetical protein compare
Atu3183 -1.0 -1.2 hypothetical protein compare
Atu0422 -1.0 -1.7 ABC transporter, membrane spanning protein compare
Atu1686 -0.9 -7.1 peptidyl-prolyl cis-trans isomerse D compare
Atu4318 -0.9 -4.6 xylitol dehydrogenase compare
Atu4482 -0.9 -6.5 xylulokinase compare
Atu3075 -0.9 -5.8 TetR family transcriptional regulator compare
Atu0687 -0.9 -2.3 hypothetical protein compare
Atu4674 -0.9 -5.4 GntR family transcriptional regulator compare
Atu3963 -0.9 -3.8 GntR family transcriptional regulator compare
Atu2532 -0.9 -2.3 transcriptional regulator, MarR family compare
Atu0421 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu4317 -0.9 -2.2 TetR family transcriptional regulator compare
Atu4477 -0.8 -3.9 TetR family transcriptional regulator compare
Atu0803 -0.8 -6.4 pyruvate,orthophosphate dikinase compare
Atu0641 -0.8 -2.8 hypothetical protein compare
Atu2554 -0.8 -1.3 lysyl-tRNA synthetase compare
Atu3663 -0.8 -1.3 hypothetical protein compare
Atu2123 -0.8 -4.0 methylenetetrahydrofolate reductase compare
Atu4187 -0.8 -1.4 tRNA-Met compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu3816 -0.8 -5.4 D-threo-aldose 1-dehydrogenase compare
Atu2747 -0.8 -5.1 hypothetical protein compare
Atu4097 -0.8 -4.7 L-aspartate oxidase compare
Atu1774 -0.8 -4.4 ABC transporter, substrate binding protein (peptide) compare
Atu1026 -0.8 -2.0 hypothetical protein compare
Atu3577 -0.8 -5.3 transcriptional regulator compare
Atu3667 -0.8 -2.3 aspartate alpha-decarboxylase compare
Atu4173 -0.8 -2.1 phosphoenolpyruvate-protein phosphotransferase compare
Atu1419 -0.7 -3.7 transcriptional regulator, GntR family compare
Atu0357 -0.7 -3.5 phosphate starvation inducible protein compare
Atu5540 -0.7 -0.8 hypothetical protein compare
Atu3740 -0.7 -4.9 fructose bisphosphate aldolase compare
Atu0049 -0.7 -2.3 hypothetical protein compare
Atu3290 -0.7 -3.3 phosphomethylpyrimidine kinase compare
Atu2808 -0.7 -3.1 cobyric acid synthase compare
Atu3288 -0.7 -4.4 hydroxyethylthiazole kinase compare
Atu0723 -0.7 -1.2 FAD dependent oxidoreductase compare
Atu0029 -0.7 -2.3 S-adenosylhomocysteine hydrolase compare
Atu5451 -0.7 -1.0 hypothetical protein compare
Atu0777 -0.7 -0.7 hypothetical protein compare
Atu0190 -0.7 -3.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0562 -0.7 -2.1 flagellar motor switch protein FliN compare
Atu1446 -0.7 -1.1 two component response regulator compare
Atu5430 -0.7 -0.6 hypothetical protein compare
Atu0142 -0.7 -1.1 cytochrome o ubiquinol oxidase subunit II compare
Atu1685 -0.6 -0.8 hypothetical protein compare
Atu2649 -0.6 -2.4 hypothetical protein compare
Atu1163 -0.6 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0976 -0.6 -2.0 cycL protein compare
Atu6153 -0.6 -2.7 conserved hypothetical protein compare
Atu8056 -0.6 -0.8 hypothetical protein compare
Atu1260 -0.6 -1.1 hypothetical protein compare
Atu0894 -0.6 -1.4 ABC transporter, membrane spanning protein compare
Atu3491 -0.6 -2.5 hypothetical protein compare
Atu2569 -0.6 -3.9 thiamine biosynthesis protein compare
Atu2224 -0.6 -2.9 aldehyde dehydrogenase compare
Atu2745 -0.6 -4.3 acetyl-coenzyme A synthetase compare
Atu3289 -0.6 -1.6 thiamine-phosphate pyrophosphorylase compare
Atu0973 -0.6 -2.9 cycH protein compare
Atu0795 -0.6 -1.4 hypothetical protein compare
Atu2548 -0.6 -4.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3887 -0.6 -1.8 small heat shock protein compare
Atu0115 -0.6 -0.7 hypothetical protein compare
Atu0382 -0.6 -2.0 hypothetical protein compare
Atu2022 -0.6 -3.4 NADP-dependent alcohol dehydrogenase compare
Atu2777 -0.6 -2.3 hypothetical protein compare
Atu1019 -0.6 -1.3 hypothetical protein compare
Atu0074 -0.6 -3.9 molybdopterin biosynthesis protein compare
Atu0135 -0.6 -2.0 uracil phosphoribosyltransferase compare
Atu4011 -0.6 -4.2 hypothetical protein compare


Specific Phenotypes

For 16 genes in this experiment

For carbon source L-Xylose in Agrobacterium fabrum C58

For carbon source L-Xylose across organisms