Experiment set2IT032 for Pseudomonas sp. RS175

Compare to:

Adenosine carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_02823 -5.3 -3.3 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_04380 -5.2 -3.6 Transcriptional regulator SutA compare
PFR28_04071 -5.0 -1.9 Multifunctional CCA protein compare
PFR28_00186 -4.7 -7.1 ATP phosphoribosyltransferase compare
PFR28_02821 -4.6 -21.0 3-isopropylmalate dehydrogenase compare
PFR28_05015 -4.4 -27.7 Glutamate synthase [NADPH] large chain compare
PFR28_02736 -4.4 -12.9 Arabinose import ATP-binding protein AraG compare
PFR28_03724 -4.4 -9.3 Glucose-6-phosphate isomerase compare
PFR28_02824 -4.4 -7.0 3-isopropylmalate dehydratase large subunit compare
PFR28_05016 -4.3 -19.8 Glutamate synthase [NADPH] small chain compare
PFR28_04278 -4.2 -15.0 Dihydroxy-acid dehydratase compare
PFR28_04246 -4.2 -11.2 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_02810 -4.2 -16.4 O-succinylhomoserine sulfhydrylase compare
PFR28_01410 -4.2 -11.7 Response regulator GacA compare
PFR28_02449 -4.0 -14.7 putative branched-chain-amino-acid aminotransferase compare
PFR28_03143 -4.0 -14.2 hypothetical protein compare
PFR28_02737 -4.0 -5.7 Ribose import binding protein RbsB compare
PFR28_04986 -4.0 -7.5 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_00561 -4.0 -3.9 Phosphogluconate dehydratase compare
PFR28_03697 -4.0 -17.3 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_02735 -3.9 -8.3 Ribose import permease protein RbsC compare
PFR28_03699 -3.9 -9.7 Acetolactate synthase isozyme 3 large subunit compare
PFR28_03142 -3.9 -5.8 5-hydroxyisourate hydrolase compare
PFR28_03144 -3.9 -10.8 Uric acid degradation bifunctional protein PucL compare
PFR28_02608 -3.8 -4.1 DNA translocase FtsK compare
PFR28_04933 -3.8 -3.2 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_00305 -3.7 -11.7 2-isopropylmalate synthase compare
PFR28_04930 -3.6 -11.1 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_00188 -3.6 -13.3 Histidinol-phosphate aminotransferase compare
PFR28_04202 -3.6 -8.4 5,10-methylenetetrahydrofolate reductase compare
PFR28_00187 -3.5 -14.3 Histidinol dehydrogenase compare
PFR28_03363 -3.5 -15.3 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_03282 -3.4 -9.5 Arginine N-succinyltransferase subunit alpha compare
PFR28_04832 -3.4 -12.3 putative phosphatase compare
PFR28_02733 -3.4 -5.6 Ribokinase compare
PFR28_04308 -3.4 -5.3 Amino-acid acetyltransferase compare
PFR28_04245 -3.3 -14.4 Homoserine O-succinyltransferase compare
PFR28_03718 -3.3 -6.3 Transcriptional regulatory protein ZraR compare
PFR28_02731 -3.3 -8.5 Pyrimidine-specific ribonucleoside hydrolase RihB compare
PFR28_03227 -3.2 -8.4 Signal transduction histidine-protein kinase BarA compare
PFR28_02603 -3.2 -7.6 Siroheme synthase compare
PFR28_03860 -3.1 -5.9 putative murein peptide carboxypeptidase compare
PFR28_01142 -3.1 -14.4 Transaldolase compare
PFR28_04633 -3.1 -8.5 Alginate biosynthesis sensor protein KinB compare
PFR28_04904 -3.0 -10.2 HTH-type transcriptional regulator HdfR compare
PFR28_03698 -2.9 -10.6 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04834 -2.9 -16.8 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04929 -2.9 -6.0 Histidine biosynthesis bifunctional protein HisB compare
PFR28_03145 -2.9 -3.2 allantoicase compare
PFR28_05125 -2.9 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_04958 -2.9 -3.3 hypothetical protein compare
PFR28_03130 -2.9 -3.7 Streptothricin hydrolase compare
PFR28_04985 -2.8 -5.3 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_00695 -2.8 -2.9 Sulfur carrier protein TusA compare
PFR28_04842 -2.8 -5.7 D-3-phosphoglycerate dehydrogenase compare
PFR28_01113 -2.8 -5.5 DNA topoisomerase 1 compare
PFR28_01930 -2.8 -4.9 HTH-type transcriptional regulator McbR compare
PFR28_03223 -2.8 -12.8 GTP pyrophosphokinase compare
PFR28_04932 -2.7 -5.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_00975 -2.7 -7.4 HTH-type transcriptional regulator HdfR compare
PFR28_01553 -2.7 -7.9 hypothetical protein compare
PFR28_01366 -2.6 -9.7 Sulfite reductase [ferredoxin] compare
PFR28_04903 -2.6 -6.7 hypothetical protein compare
PFR28_04564 -2.6 -12.8 Aspartate-semialdehyde dehydrogenase compare
PFR28_04902 -2.6 -8.5 Inner membrane protein YgaZ compare
PFR28_04565 -2.5 -13.5 Protein RarD compare
PFR28_02719 -2.5 -3.8 Integration host factor subunit alpha compare
PFR28_00573 -2.5 -11.1 Glucose-6-phosphate 1-dehydrogenase compare
PFR28_04831 -2.4 -3.9 RNA pyrophosphohydrolase compare
PFR28_00976 -2.4 -10.6 hypothetical protein compare
PFR28_04830 -2.4 -12.3 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_03883 -2.4 -8.9 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_02484 -2.4 -9.5 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_03596 -2.4 -3.2 Transcriptional regulator MraZ compare
PFR28_04900 -2.3 -12.9 hypothetical protein compare
PFR28_03146 -2.3 -6.4 Ureidoglycolate lyase compare
PFR28_04252 -2.2 -8.9 Thiazole synthase compare
PFR28_03843 -2.2 -7.1 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_01365 -2.2 -5.5 hypothetical protein compare
PFR28_04887 -2.2 -3.0 '3'(2'),5'-bisphosphate nucleotidase CysQ' transl_table=11 compare
PFR28_03151 -2.2 -3.5 Septum site-determining protein MinC compare
PFR28_03657 -2.2 -7.6 Beta-barrel assembly-enhancing protease compare
PFR28_00304 -2.2 -2.0 hypothetical protein compare
PFR28_03840 -2.2 -13.8 AMP nucleosidase conserved
PFR28_03420 -2.2 -5.3 hypothetical protein compare
PFR28_04030 -2.2 -13.4 hypothetical protein compare
PFR28_03653 -2.1 -4.4 Molybdopterin-synthase adenylyltransferase compare
PFR28_05071 -2.1 -4.5 D-inositol-3-phosphate glycosyltransferase compare
PFR28_03784 -2.1 -8.5 Energy-dependent translational throttle protein EttA compare
PFR28_03414 -2.0 -3.6 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_02734 -2.0 -4.1 Ribose operon repressor compare
PFR28_00159 -2.0 -10.0 hypothetical protein compare
PFR28_00194 -2.0 -8.9 Bifunctional enzyme CysN/CysC compare
PFR28_00926 -2.0 -1.9 hypothetical protein compare
PFR28_00193 -2.0 -9.9 Sulfate adenylyltransferase subunit 2 compare
PFR28_04060 -2.0 -11.8 N-acetylmuramate/N-acetylglucosamine kinase compare
PFR28_03846 -1.9 -7.3 hypothetical protein compare
PFR28_05105 -1.9 -9.0 Phosphoserine phosphatase SerB2 compare
PFR28_00918 -1.9 -8.7 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) compare
PFR28_05091 -1.9 -12.6 Phosphomethylpyrimidine synthase compare
PFR28_03844 -1.9 -4.2 Thiamine-phosphate synthase compare
PFR28_00873 -1.9 -5.3 hypothetical protein compare
PFR28_00983 -1.9 -6.0 Protease HtpX compare
PFR28_03217 -1.9 -2.4 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_00928 -1.8 -2.1 putative sugar transferase EpsL compare
PFR28_01156 -1.8 -6.3 hypothetical protein compare
PFR28_03719 -1.8 -5.3 Poly(A) polymerase I compare
PFR28_03169 -1.8 -10.0 Tail-specific protease compare
PFR28_04396 -1.8 -8.0 HTH-type transcriptional regulator PuuR compare
PFR28_03429 -1.8 -5.5 Thiamine-phosphate synthase compare
PFR28_04566 -1.7 -10.5 4-chloro-allylglycine synthase compare
PFR28_01119 -1.7 -4.5 Beta-hexosaminidase compare
PFR28_00356 -1.7 -5.3 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_03549 -1.7 -2.0 Molybdopterin synthase catalytic subunit compare
PFR28_00100 -1.7 -6.2 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFR28_05078 -1.6 -2.7 hypothetical protein compare
PFR28_04963 -1.6 -7.1 HTH-type transcriptional repressor NagR compare
PFR28_04481 -1.6 -9.1 hypothetical protein compare
PFR28_00688 -1.6 -1.7 hypothetical protein compare
PFR28_04936 -1.6 -3.7 Carboxy-terminal processing protease CtpB compare
PFR28_04517 -1.6 -9.9 Oxaloacetate decarboxylase alpha chain compare
PFR28_03000 -1.5 -6.6 'GTP 3',8-cyclase' transl_table=11 compare
PFR28_01064 -1.5 -7.4 hypothetical protein compare
PFR28_04031 -1.5 -10.7 Anhydro-N-acetylmuramic acid kinase compare
PFR28_01081 -1.5 -4.8 hypothetical protein compare
PFR28_03413 -1.5 -3.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_03412 -1.5 -5.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_03714 -1.5 -10.2 RNA polymerase-binding transcription factor DksA compare
PFR28_01749 -1.5 -2.2 hypothetical protein compare
PFR28_04939 -1.5 -5.1 putative protein YibN compare
PFR28_04569 -1.5 -6.1 HTH-type transcriptional regulator CdhR compare
PFR28_02732 -1.5 -3.2 D-ribose pyranase compare
PFR28_00851 -1.5 -1.6 Flagellum site-determining protein YlxH compare
PFR28_01154 -1.5 -2.6 hypothetical protein compare
PFR28_01063 -1.4 -10.9 putative xanthine dehydrogenase subunit D compare
PFR28_03837 -1.4 -5.1 Leucine-responsive regulatory protein compare
PFR28_03388 -1.4 -9.1 Quinolinate synthase A compare
PFR28_01265 -1.4 -5.9 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_01083 -1.4 -5.5 putative copper-importing P-type ATPase A compare
PFR28_01062 -1.4 -6.4 hypothetical protein compare
PFR28_00098 -1.4 -5.7 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_00837 -1.4 -4.6 hypothetical protein compare
PFR28_03551 -1.4 -4.2 Cyclic pyranopterin monophosphate synthase compare
PFR28_02750 -1.3 -3.7 Multiple antibiotic resistance protein MarR compare
PFR28_05212 -1.3 -8.3 Sensor histidine kinase RcsC compare
PFR28_04567 -1.3 -8.6 hypothetical protein compare
PFR28_02497 -1.3 -7.5 Molybdenum transport system permease protein ModB compare
PFR28_02496 -1.3 -5.3 Molybdate-binding protein ModA compare
PFR28_00495 -1.3 -9.7 hypothetical protein compare
PFR28_00913 -1.3 -4.9 Integration host factor subunit beta compare
PFR28_00988 -1.3 -7.5 Sensor histidine kinase RcsC compare
PFR28_02283 -1.3 -2.5 hypothetical protein compare
PFR28_01006 -1.3 -5.5 Molybdopterin molybdenumtransferase compare
PFR28_00179 -1.3 -4.8 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_00425 -1.3 -9.0 Protein-L-isoaspartate O-methyltransferase compare
PFR28_00277 -1.3 -2.1 Queuine tRNA-ribosyltransferase compare
PFR28_03865 -1.3 -5.5 Endolytic peptidoglycan transglycosylase RlpA compare
PFR28_01527 -1.3 -4.6 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PFR28_00839 -1.3 -4.1 hypothetical protein compare
PFR28_05139 -1.3 -2.0 hypothetical protein compare
PFR28_04056 -1.3 -6.5 Membrane-bound lytic murein transglycosylase F compare
PFR28_04100 -1.3 -5.4 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_04366 -1.2 -7.8 Sensory transduction protein LytR compare
PFR28_00473 -1.2 -2.4 Regulatory protein RecX compare
PFR28_04377 -1.2 -4.8 hypothetical protein compare
PFR28_05204 -1.2 -3.7 Sulfite reductase [ferredoxin] compare
PFR28_03012 -1.2 -4.5 Phosphate acyltransferase compare
PFR28_00730 -1.2 -3.3 5-oxoprolinase subunit C compare
PFR28_02811 -1.2 -3.9 Amidophosphoribosyltransferase compare
PFR28_04585 -1.2 -4.9 Chromosome partitioning protein ParA compare
PFR28_04901 -1.2 -4.3 Acetyltransferase YpeA compare
PFR28_04485 -1.2 -2.9 Phosphate-specific transport system accessory protein PhoU compare
PFR28_00424 -1.2 -5.2 '5'-nucleotidase SurE' transl_table=11 compare
PFR28_02846 -1.2 -4.7 Adaptive-response sensory-kinase SasA compare
PFR28_00961 -1.2 -8.1 hypothetical protein compare
PFR28_03086 -1.2 -7.9 Chaperone protein HtpG compare
PFR28_03281 -1.2 -3.9 Arginine N-succinyltransferase subunit beta compare
PFR28_00780 -1.1 -1.2 hypothetical protein compare
PFR28_01231 -1.1 -2.6 Peptidyl-prolyl cis-trans isomerase D compare
PFR28_05253 -1.1 -5.6 Adenine deaminase conserved
PFR28_02280 -1.1 -3.1 hypothetical protein compare
PFR28_04628 -1.1 -2.2 Thiol:disulfide interchange protein DsbA compare
PFR28_01435 -1.1 -1.6 Response regulator UvrY compare
PFR28_00729 -1.1 -5.5 5-oxoprolinase subunit B compare
PFR28_01157 -1.1 -1.6 hypothetical protein compare
PFR28_03202 -1.1 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_01084 -1.1 -3.9 hypothetical protein compare
PFR28_02212 -1.1 -2.7 Ubiquinone biosynthesis accessory factor UbiJ compare
PFR28_05036 -1.1 -1.0 Acyl carrier protein compare
PFR28_02009 -1.1 -1.2 HTH-type transcriptional regulator PgrR compare
PFR28_05006 -1.1 -9.6 Penicillin-binding protein 1A compare
PFR28_00472 -1.1 -2.8 Protein RecA compare
PFR28_01250 -1.1 -6.4 hypothetical protein compare
PFR28_03147 -1.1 -6.7 hypothetical protein compare
PFR28_03219 -1.1 -7.8 hypothetical protein compare
PFR28_03635 -1.1 -3.5 Malate:quinone oxidoreductase compare
PFR28_04518 -1.0 -6.1 2-oxoglutarate carboxylase small subunit compare
PFR28_00968 -1.0 -1.4 hypothetical protein compare
PFR28_03856 -1.0 -2.1 LPS-assembly lipoprotein LptE compare
PFR28_03209 -1.0 -3.3 Corrinoid adenosyltransferase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Adenosine in Pseudomonas sp. RS175

For carbon source Adenosine across organisms