Experiment set2IT032 for Agrobacterium fabrum C58

Compare to:

L-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
Atu0038 -7.6 -5.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1687 -6.5 -10.9 anthranilate phosphoribosyltransferase compare
Atu0679 -6.3 -6.1 ATP phosphoribosyltransferase compare
Atu2709 -5.7 -20.0 3-isopropylmalate dehydratase, large subunit compare
Atu0017 -5.6 -3.9 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1844 -5.6 -5.4 Phosphoribosylformylglycinamidine synthetase compare
Atu2036 -5.5 -16.3 acetolactate synthase III, large subunit compare
Atu3754 -5.4 -7.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1750 -5.3 -7.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu0678 -5.3 -6.3 histidyl-tRNA synthetase compare
Atu2264 -5.2 -12.9 2-isopropylmalate synthase compare
Atu0537 -5.1 -7.0 histidinol dehydrogenase compare
Atu3755 -5.1 -6.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2791 -5.0 -9.6 3-isopropylmalate dehydrogenase compare
Atu1075 -4.9 -6.9 amidophosphoribosyltransferase compare
Atu0043 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu1688 -4.7 -7.9 indole-3-glycerol-phosphate synthase compare
Atu2289 -4.7 -20.3 anthranilate synthase component I and II compare
Atu1850 -4.7 -6.2 phosphoribosylformylglycinamidine synthetase II compare
Atu0062 -4.6 -9.7 transcriptional regulator, ROK family compare
Atu0041 -4.6 -3.2 glutamine amidotransferase compare
Atu0099 -4.6 -9.0 prephenate dehydratase compare
Atu0039 -4.6 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -4.6 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0486 -4.4 -7.2 dihydroorotate dehydrogenase compare
Atu0432 -4.4 -8.7 O-succinylhomoserine sulfhydrylase compare
Atu2650 -4.3 -11.4 glycerol-3-phosphate dehydrogenase compare
Atu1307 -4.3 -8.7 dihydroorotase compare
Atu3707 -4.2 -4.9 phosphoserine aminotransferase compare
Atu0298 -4.2 -9.7 orotidine 5 compare
Atu1308 -4.1 -8.3 aspartate carbamoyl transferase catalytic subunit compare
Atu1588 -4.1 -12.7 homoserine dehydrogenase compare
Atu0400 -4.1 -6.7 orotate phosphoribosyltransferase compare
Atu1205 -4.0 -16.1 threonine dehydratase compare
Atu0647 -3.8 -9.1 phosphoribosylamine--glycine ligase compare
Atu0399 -3.8 -9.7 dihydroorotase compare
Atu2790 -3.5 -3.4 3-isopropylmalate dehydratase, small subunit compare
Atu2040 -3.5 -7.5 phosphoserine phosphatase compare
Atu3885 -3.4 -12.1 inositol monophosphatase compare
Atu2718 -3.4 -9.8 homoserine O-succinyltransferase compare
Atu1359 -3.4 -2.0 dnaK deletion suppressor protein compare
Atu1141 -3.4 -7.6 Phosphoribosylglycinamide synthetase compare
Atu1140 -3.3 -7.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0014 -3.2 -9.3 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
Atu1845 -3.2 -3.7 phosphoribosylformylglycinamidine synthase I compare
Atu0030 -2.7 -2.5 phosphocarrier protein HPr compare
Atu0434 -2.7 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3482 -2.7 -13.3 pantoate--beta-alanine ligase compare
Atu1456 -2.7 -12.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0322 -2.5 -9.3 enoyl CoA hydratase compare
Atu0047 -2.5 -14.3 malate synthase G compare
Atu0666 -2.4 -10.0 glycolate oxidase subunit compare
Atu2155 -2.4 -15.4 methionine synthase compare
Atu2015 -2.3 -10.1 aminotransferase compare
Atu0667 -2.3 -11.7 glycolate oxidase iron-sulfur subunit compare
Atu0665 -2.3 -11.1 glycolate oxidase subunit compare
Atu3783 -2.3 -13.8 glutamate synthase subunit beta compare
Atu0769 -2.2 -2.6 protoheme IX farnesyltransferase compare
Atu0876 -2.2 -2.7 superoxide dismutase compare
Atu3817 -2.2 -10.9 dehydratase compare
Atu1286 -2.2 -3.5 hypothetical protein compare
Atu6098 -2.1 -1.2 transcriptional regulator, HTH family compare
Atu4505 -2.1 -10.9 LacI family transcriptional regulator compare
Atu1463 -2.0 -6.2 glycine cleavage system component H compare
Atu0035 -2.0 -10.4 phosphoenolpyruvate carboxykinase compare
Atu3784 -2.0 -16.7 glutamate synthase large subunit compare
Atu1462 -1.9 -10.9 glycine cleavage system protein P2 compare
Atu0664 -1.9 -11.0 transcriptional regulator, LysR family compare
Atu1517 -1.9 -5.2 hypothetical protein compare
Atu1464 -1.9 -5.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu4502 -1.9 -9.9 cobalamin synthesis protein compare
Atu0040 -1.8 -1.5 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0346 -1.8 -2.4 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1028 -1.8 -3.3 hypothetical protein compare
Atu1454 -1.7 -8.3 siroheme synthase compare
Atu0101 -1.6 -4.8 cytochrome c compare
Atu2238 -1.6 -5.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu0768 -1.6 -10.0 cytochrome-c oxidase chain I compare
Atu4514 -1.6 -5.3 RpiR family transcriptional regulator compare
Atu3739 -1.6 -3.8 phosphoglycerate kinase compare
Atu3483 -1.5 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu5125 -1.5 -5.1 GntR family transcriptional regulator compare
Atu0767 -1.5 -6.2 cytochrome c oxidase subunit II compare
Atu0770 -1.5 -5.5 cytochrome C oxidase assembly protein compare
Atu2239 -1.5 -5.2 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0771 -1.5 -7.4 cytochrome c oxidase subunit III compare
Atu0536 -1.5 -6.3 hypothetical protein compare
Atu2821 -1.5 -4.1 transcriptional regulator, GntR family compare
Atu4616 -1.5 -2.5 dTDP-4-dehydrorhamnose reductase compare
Atu1074 -1.4 -7.8 NAD/NADP dependent oxidoreductase compare
Atu4029 -1.4 -6.4 gluconolactonase compare
Atu1564 -1.4 -8.2 hypothetical protein compare
Atu1455 -1.4 -2.4 hypothetical protein compare
Atu3240 -1.4 -9.4 ROK family transcriptional regulator compare
Atu2554 -1.4 -2.2 lysyl-tRNA synthetase compare
Atu1242 -1.4 -7.2 cytochrome oxidase assembly factor compare
Atu3740 -1.4 -7.8 fructose bisphosphate aldolase compare
Atu3337 -1.3 -8.8 LacI family transcriptional regulator compare
Atu0501 -1.3 -8.4 acyl-CoA dehydrogenase compare
Atu2237 -1.3 -4.3 cytochrome c1 compare
Atu3219 -1.3 -9.6 dihydroxy-acid dehydratase compare
Atu1516 -1.2 -6.6 hypothetical protein compare
Atu0894 -1.2 -2.8 ABC transporter, membrane spanning protein compare
Atu2067 -1.2 -1.0 hypothetical protein compare
Atu4098 -1.2 -7.8 quinolinate synthetase compare
Atu0502 -1.2 -4.5 acetyl-CoA acetyltransferase compare
Atu0503 -1.2 -8.6 enoyl-CoA hydratase compare
Atu0912 -1.2 -1.4 Na+/H+ antiporter compare
Atu0405 -1.2 -9.3 long-chain-fatty-acid-CoA-ligase compare
Atu4096 -1.2 -7.0 nicotinate-nucleotide pyrophosphorylase compare
Atu3706 -1.1 -4.9 D-3-phosphoglycerate dehydrogenase compare
Atu0803 -1.1 -8.4 pyruvate,orthophosphate dikinase compare
Atu4711 -1.1 -6.5 two component sensor kinase compare
Atu2376 -1.1 -1.0 hypothetical protein compare
Atu2822 -1.1 -7.2 D-galactarate dehydratase compare
Atu4318 -1.1 -7.6 xylitol dehydrogenase compare
Atu1219 -1.1 -1.1 hypothetical protein compare
Atu4685 -1.1 -6.3 LacI family transcriptional regulator compare
Atu3598 -1.1 -3.1 thiol:disulfide interchange protein compare
Atu0895 -1.1 -1.9 ABC transporter, substrate binding protein compare
Atu2115 -1.1 -7.6 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu5164 -1.1 -0.9 type IV secretion protein AvhB3 compare
Atu0846 -1.1 -4.4 transcriptional regulator, MarR family compare
Atu2270 -1.0 -1.5 ATP-dependent Clp protease, proteolytic subunit compare
Atu2747 -1.0 -6.9 hypothetical protein compare
Atu0225 -1.0 -1.1 hypothetical protein compare
Atu4674 -1.0 -7.6 GntR family transcriptional regulator compare
Atu3496 -1.0 -2.4 hypothetical protein compare
Atu1748 -1.0 -4.5 NIFU-like protein compare
Atu0401 -1.0 -3.7 fructokinase compare
Atu4773 -1.0 -1.9 two component response regulator compare
Atu4482 -1.0 -6.8 xylulokinase compare
Atu1705 -1.0 -2.7 SEC-independent protein translocase protein compare
Atu4187 -1.0 -1.7 tRNA-Met compare
Atu4501 -1.0 -5.6 hypothetical protein compare
Atu0357 -1.0 -6.7 phosphate starvation inducible protein compare
Atu0031 -1.0 -1.3 PTS system, IIA component compare
Atu5451 -1.0 -1.0 hypothetical protein compare
Atu0641 -1.0 -3.1 hypothetical protein compare
Atu1774 -0.9 -4.3 ABC transporter, substrate binding protein (peptide) compare
Atu4364 -0.9 -4.9 LacI family transcriptional regulator compare
Atu4097 -0.9 -6.0 L-aspartate oxidase compare
Atu3813 -0.9 -3.8 3-oxoacyl-ACP reductase compare
Atu1589 -0.9 -3.2 aminotransferase, class I compare
Atu3280 -0.9 -4.7 GntR family transcriptional regulator compare
Atu3668 -0.9 -2.8 siderophore biosynthesis protein compare
Atu0422 -0.9 -1.3 ABC transporter, membrane spanning protein compare
Atu3963 -0.9 -4.6 GntR family transcriptional regulator compare
Atu2662 -0.8 -1.4 acetyltransferase compare
Atu3012 -0.8 -1.0 hypothetical protein compare
Atu1701 -0.8 -1.7 protein-L-isoaspartate O-methyltransferase compare
Atu1323 -0.8 -2.6 hypothetical protein compare
Atu4217 -0.8 -1.4 TetR family transcriptional regulator compare
Atu4477 -0.8 -5.5 TetR family transcriptional regulator compare
Atu2801 -0.8 -2.5 precorrin-2 C20 methyltransferase compare
Atu5540 -0.8 -0.9 hypothetical protein compare
Atu3290 -0.8 -4.9 phosphomethylpyrimidine kinase compare
Atu1546 -0.8 -2.3 transcriptional regulator, MerR family compare
Atu4173 -0.8 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu1795 -0.8 -3.5 malonate transporter compare
Atu1686 -0.7 -6.0 peptidyl-prolyl cis-trans isomerse D compare
Atu2224 -0.7 -4.2 aldehyde dehydrogenase compare
Atu0976 -0.7 -1.3 cycL protein compare
Atu3816 -0.7 -5.0 D-threo-aldose 1-dehydrogenase compare
Atu2569 -0.7 -5.0 thiamine biosynthesis protein compare
Atu3505 -0.7 -4.7 3-hydroxyisobutyryl-CoA hydrolase compare
Atu0749 -0.7 -2.3 biotin synthesis BioY protein compare
Atu2799 -0.7 -2.9 precorrin-6x reductase compare
Atu8166 -0.7 -2.9 hypothetical protein compare
Atu2777 -0.7 -4.3 hypothetical protein compare
Atu0280 -0.7 -1.5 hypothetical protein compare
Atu2225 -0.7 -3.8 transcriptional regulator compare
Atu1606 -0.6 -2.3 methionine aminopeptidase compare
Atu3577 -0.6 -3.9 transcriptional regulator compare
Atu0190 -0.6 -3.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3105 -0.6 -3.3 hypothetical protein compare
Atu0106 -0.6 -3.0 cold shock protein compare
Atu2746 -0.6 -1.6 hypothetical protein compare
Atu1184 -0.6 -1.4 hypothetical protein compare
Atu0566 -0.6 -1.2 hypothetical protein compare
Atu3144 -0.6 -2.5 GntR family transcriptional regulator compare
Atu0496 -0.6 -1.4 hypothetical protein compare
Atu2555 -0.6 -2.5 L-lysine 2,3-aminomutase compare
Atu2025 -0.6 -2.3 transcriptional regulator compare
Atu0119 -0.6 -0.8 hypothetical protein compare
Atu4873 -0.6 -2.8 TetR family transcriptional regulator compare
Atu1667 -0.6 -1.3 hypothetical protein compare
Atu2532 -0.6 -2.2 transcriptional regulator, MarR family compare
Atu2021 -0.6 -2.0 transcriptional regulator, AraC family compare
Atu2258 -0.6 -2.0 acetyltransferase compare
Atu2249 -0.6 -0.8 hypothetical protein compare
Atu4702 -0.6 -3.3 GntR family transcriptional regulator compare
Atu5142 -0.6 -0.7 hypothetical protein compare
Atu2352 -0.6 -1.1 hypothetical protein compare
Atu3763 -0.6 -0.8 hypothetical protein compare
Atu3466 -0.6 -0.7 ArsR family transcriptional regulator compare
Atu0328 -0.6 -3.2 heat-inducible transcription repressor compare
Atu2795 -0.5 -3.2 cobalamin biosynthetic protein compare
Atu1760 -0.5 -0.9 hypothetical protein compare
Atu0029 -0.5 -2.6 S-adenosylhomocysteine hydrolase compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source L-Xylose in Agrobacterium fabrum C58

For carbon source L-Xylose across organisms