Experiment set2IT031 for Agrobacterium fabrum C58

Compare to:

D-Cellobiose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1850 -8.1 -5.6 phosphoribosylformylglycinamidine synthetase II compare
Atu2289 -7.8 -9.3 anthranilate synthase component I and II compare
Atu1845 -7.7 -5.3 phosphoribosylformylglycinamidine synthase I compare
Atu2791 -7.3 -7.1 3-isopropylmalate dehydrogenase compare
Atu2036 -7.1 -10.9 acetolactate synthase III, large subunit compare
Atu0400 -7.1 -4.9 orotate phosphoribosyltransferase compare
Atu2264 -7.1 -11.8 2-isopropylmalate synthase compare
Atu0432 -7.1 -8.1 O-succinylhomoserine sulfhydrylase compare
Atu0679 -7.0 -4.8 ATP phosphoribosyltransferase compare
Atu2709 -7.0 -18.6 3-isopropylmalate dehydratase, large subunit compare
Atu2726 -6.9 -21.3 pyruvate carboxylase compare
Atu1687 -6.9 -11.0 anthranilate phosphoribosyltransferase compare
Atu0038 -6.8 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1205 -6.8 -13.1 threonine dehydratase compare
Atu1308 -6.8 -8.1 aspartate carbamoyl transferase catalytic subunit compare
Atu3783 -6.7 -19.0 glutamate synthase subunit beta compare
Atu0486 -6.7 -6.6 dihydroorotate dehydrogenase compare
Atu0099 -6.7 -11.1 prephenate dehydratase compare
Atu2040 -6.6 -4.6 phosphoserine phosphatase compare
Atu2650 -6.5 -13.2 glycerol-3-phosphate dehydrogenase compare
Atu3482 -6.5 -10.4 pantoate--beta-alanine ligase compare
Atu3885 -6.4 -7.6 inositol monophosphatase compare
Atu0537 -6.4 -4.4 histidinol dehydrogenase compare
Atu3706 -6.4 -8.7 D-3-phosphoglycerate dehydrogenase compare
Atu1688 -6.3 -4.4 indole-3-glycerol-phosphate synthase compare
Atu3707 -6.3 -4.3 phosphoserine aminotransferase compare
Atu1307 -6.2 -8.4 dihydroorotase compare
Atu3755 -6.1 -5.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1075 -6.1 -9.3 amidophosphoribosyltransferase compare
Atu3784 -6.0 -29.8 glutamate synthase large subunit compare
Atu0017 -6.0 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1750 -6.0 -8.8 phosphoribosyl c-AMP cyclohydrolase compare
Atu3754 -5.9 -4.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2747 -5.9 -13.9 hypothetical protein compare
Atu3483 -5.9 -9.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2718 -5.8 -10.4 homoserine O-succinyltransferase compare
Atu0184 -5.8 -4.0 glucokinase compare
Atu0298 -5.8 -8.8 orotidine 5 compare
Atu3739 -5.6 -2.8 phosphoglycerate kinase compare
Atu1141 -5.4 -10.4 Phosphoribosylglycinamide synthetase compare
Atu0399 -5.4 -6.4 dihydroorotase compare
Atu0647 -5.3 -8.1 phosphoribosylamine--glycine ligase compare
Atu2790 -5.3 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu0043 -5.2 -3.6 imidazoleglycerol-phosphate dehydratase compare
Atu2015 -5.1 -16.1 aminotransferase compare
Atu1140 -5.0 -5.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0041 -5.0 -3.5 glutamine amidotransferase compare
Atu0185 -5.0 -7.2 methylglyoxal synthase compare
Atu0039 -5.0 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu1588 -4.9 -9.4 homoserine dehydrogenase compare
Atu1686 -4.8 -18.9 peptidyl-prolyl cis-trans isomerse D compare
Atu0678 -4.7 -6.8 histidyl-tRNA synthetase compare
Atu0030 -4.6 -2.5 phosphocarrier protein HPr compare
Atu1844 -4.3 -4.4 Phosphoribosylformylglycinamidine synthetase compare
Atu3469 -4.3 -4.1 phosphoglyceromutase compare
Atu3731 -4.1 -9.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu0641 -3.9 -5.4 hypothetical protein compare
Atu0792 -3.9 -11.1 hypothetical protein compare
Atu2548 -3.9 -20.6 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4075 -3.8 -11.4 glycogen synthase compare
Atu1462 -3.8 -17.4 glycine cleavage system protein P2 compare
Atu1463 -3.8 -7.3 glycine cleavage system component H compare
Atu1359 -3.7 -2.0 dnaK deletion suppressor protein compare
Atu0598 -3.7 -12.8 phosphogluconate dehydratase compare
Atu1685 -3.7 -2.0 hypothetical protein compare
Atu0723 -3.5 -2.4 FAD dependent oxidoreductase compare
Atu1446 -3.2 -4.8 two component response regulator compare
Atu1589 -3.1 -6.7 aminotransferase, class I compare
Atu1456 -3.0 -12.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1464 -3.0 -7.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu2155 -3.0 -19.6 methionine synthase compare
Atu0040 -3.0 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4096 -2.9 -9.3 nicotinate-nucleotide pyrophosphorylase compare
Atu3289 -2.7 -4.2 thiamine-phosphate pyrophosphorylase compare
Atu0029 -2.7 -6.6 S-adenosylhomocysteine hydrolase compare
Atu1030 -2.6 -2.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2205 -2.6 -8.0 transcriptional regulator, MarR family compare
Atu4098 -2.6 -12.0 quinolinate synthetase compare
Atu3290 -2.5 -10.6 phosphomethylpyrimidine kinase compare
Atu1454 -2.5 -11.7 siroheme synthase compare
Atu1604 -2.5 -15.8 poly-beta-hydroxybutyrate synthase compare
Atu4097 -2.4 -13.0 L-aspartate oxidase compare
Atu3997 -2.4 -14.5 biotin synthetase compare
Atu2569 -2.4 -11.5 thiamine biosynthesis protein compare
Atu1748 -2.3 -13.1 NIFU-like protein compare
Atu3288 -2.3 -7.1 hydroxyethylthiazole kinase compare
Atu1572 -2.2 -8.8 hydrolase compare
Atu3999 -2.2 -3.4 dithiobiotin synthetase compare
Atu4000 -2.1 -15.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3998 -2.1 -12.3 8-amino-7-oxononanoate synthase compare
Atu3730 -2.0 -2.0 hypothetical protein compare
Atu2127 -2.0 -9.5 L-carnitine dehydratase compare
Atu1455 -1.9 -3.4 hypothetical protein compare
Atu1526 -1.9 -11.7 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu4001 -1.8 -9.7 3-oxoacyl-ACP synthase compare
Atu8115 -1.7 -4.1 Hypothetical Protein compare
Atu0319 -1.7 -2.0 ubiquinone biosynthesis protein compare
Atu4144 -1.7 -1.7 hypothetical protein compare
Atu1891 -1.7 -5.5 cobalamin biosynthesis protein compare
Atu6114 -1.7 -2.5 hypothetical protein compare
Atu0876 -1.6 -2.1 superoxide dismutase compare
Atu1810 -1.6 -1.9 hypothetical protein compare
Atu0086 -1.5 -1.6 ribosome-binding factor A compare
Atu1182 -1.5 -1.9 hypothetical protein compare
Atu2123 -1.4 -6.1 methylenetetrahydrofolate reductase compare
Atu3712 -1.3 -2.3 hypothetical protein compare
Atu4173 -1.3 -3.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu1542 -1.3 -6.1 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4711 -1.3 -4.5 two component sensor kinase compare
Atu0434 -1.3 -3.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2200 -1.3 -3.6 cold shock protein compare
Atu2805 -1.3 -6.2 cobalamin synthesis protein compare
Atu2808 -1.2 -5.7 cobyric acid synthase compare
Atu8161 -1.2 -2.0 hypothetical protein compare
Atu1620 -1.2 -7.4 triosephosphate isomerase compare
Atu2801 -1.2 -5.3 precorrin-2 C20 methyltransferase compare
Atu1457 -1.2 -1.6 hypothetical protein compare
Atu3287 -1.1 -4.2 thiamine biosynthesis associated protein compare
Atu3518 -1.1 -6.2 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu2376 -1.1 -0.9 hypothetical protein compare
Atu2809 -1.1 -6.9 cobalamin biosynthesis protein compare
Atu0837 -1.1 -6.3 transcriptional regulator, MarR family compare
Atu0361 -1.1 -2.3 transcriptional regulator compare
Atu2555 -1.1 -4.6 L-lysine 2,3-aminomutase compare
Atu0354 -1.1 -2.2 ferric uptake regulator compare
Atu2795 -1.1 -6.2 cobalamin biosynthetic protein compare
Atu5142 -1.1 -1.7 hypothetical protein compare
Atu4374 -1.0 -4.4 hypothetical protein compare
Atu0189 -1.0 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu2800 -1.0 -1.6 precorrin-3B C17-methyltransferase compare
Atu1774 -1.0 -5.9 ABC transporter, substrate binding protein (peptide) compare
Atu2554 -1.0 -1.2 lysyl-tRNA synthetase compare
Atu4317 -1.0 -2.6 TetR family transcriptional regulator compare
Atu0332 -1.0 -5.6 RNA polymerase sigma-54 factor compare
Atu4616 -1.0 -1.7 dTDP-4-dehydrorhamnose reductase compare
Atu1570 -1.0 -1.0 hypothetical protein compare
Atu0590 -1.0 -5.7 transcriptional regulator repressor compare
Atu1546 -1.0 -3.2 transcriptional regulator, MerR family compare
Atu2803 -1.0 -3.3 Cobalamin biosynthesis associated protein compare
Atu2804 -1.0 -6.5 cobaltochelatase subunit compare
Atu1372 -1.0 -4.3 hypothetical protein compare
Atu3908 -1.0 -5.9 GntR family transcriptional regulator compare
Atu4375 -1.0 -6.9 hypothetical protein compare
Atu2770 -1.0 -3.7 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu1439 -1.0 -2.3 hypothetical protein compare
Atu0190 -1.0 -5.4 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2798 -0.9 -3.2 precorrin-6y methyltransferase compare
Atu2020 -0.9 -1.6 transcriptional regulator, TetR family compare
Atu2802 -0.9 -6.6 precorrin-8X methylmutase compare
Atu2209 -0.9 -2.7 pyrroline-5-carboxylate reductase compare
Atu3468 -0.9 -1.0 hypothetical protein compare
Atu0031 -0.9 -1.3 PTS system, IIA component compare
Atu2799 -0.9 -3.0 precorrin-6x reductase compare
Atu0291 -0.9 -5.6 hypothetical protein compare
Atu4373 -0.9 -4.4 LacI family transcriptional regulator compare
Atu4053 -0.9 -1.4 succinoglycan biosynthesis protein compare
Atu0976 -0.8 -1.7 cycL protein compare
Atu2807 -0.8 -3.5 cob(I)alamin adenosyltransferase compare
Atu1219 -0.8 -1.0 hypothetical protein compare
Atu2640 -0.8 -3.3 hypothetical protein compare
Atu5430 -0.8 -0.8 hypothetical protein compare
Atu0188 -0.8 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu3183 -0.8 -0.9 hypothetical protein compare
Atu0687 -0.8 -2.0 hypothetical protein compare
Atu2057 -0.8 -2.2 DNA helicase II compare
Atu1802 -0.8 -5.0 lactoylglutathione lyase compare
Atu1077 -0.8 -2.5 DNA repair protein compare
Atu2793 -0.7 -3.8 cobyrinic acid a,c-diamide synthase compare
Atu2432 -0.7 -2.3 hypothetical protein compare
Atu2746 -0.7 -1.6 hypothetical protein compare
Atu0977 -0.7 -3.2 serine protease DO-like protease compare
Atu0346 -0.7 -1.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1847 -0.7 -1.3 hypothetical protein compare
Atu2821 -0.7 -2.6 transcriptional regulator, GntR family compare
Atu0149 -0.7 -2.6 enoyl-(acyl-carrier-protein) reductase compare
Atu3496 -0.7 -2.9 hypothetical protein compare
Atu4477 -0.7 -3.8 TetR family transcriptional regulator compare
Atu1286 -0.7 -2.5 hypothetical protein compare
Atu8168 -0.7 -2.0 hypothetical protein compare
Atu0887 -0.7 -4.3 acetyltransferase compare
Atu2484 -0.7 -1.4 hypothetical protein compare
Atu3486 -0.7 -1.7 DeoR family transcriptional regulator compare
Atu3763 -0.7 -1.0 hypothetical protein compare
Atu4462 -0.7 -3.0 transcriptional regulator compare
Atu8162 -0.7 -1.2 hypothetical protein compare
Atu2649 -0.7 -2.7 hypothetical protein compare
Atu4502 -0.6 -4.4 cobalamin synthesis protein compare
Atu0601 -0.6 -4.2 oxidoreductase compare
Atu0926 -0.6 -1.7 hypothetical protein compare
Atu2128 -0.6 -4.6 acetolactate synthase large subunit compare
Atu2796 -0.6 -2.9 precorrin-4 C11-methyltransferase compare
Atu3732 -0.6 -3.3 hemolysin compare
Atu3757 -0.6 -1.3 hypothetical protein compare
Atu2258 -0.6 -2.7 acetyltransferase compare
Atu4161 -0.6 -1.1 hypothetical protein compare
Atu0419 -0.6 -1.1 two component sensor kinase compare
Atu2824 -0.6 -2.5 hypothetical protein compare
Atu4187 -0.6 -1.1 tRNA-Met compare
Atu3252 -0.6 -1.7 GntR family transcriptional regulator compare
Atu8020 -0.6 -1.5 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Cellobiose in Agrobacterium fabrum C58

For carbon source D-Cellobiose across organisms