Experiment set2IT030 for Agrobacterium fabrum C58

Compare to:

D-Cellobiose carbon source

200 most important genes:

  gene name fitness t score description  
Atu0038 -7.8 -5.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3754 -7.7 -5.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0099 -7.7 -5.3 prephenate dehydratase compare
Atu1845 -7.6 -5.2 phosphoribosylformylglycinamidine synthase I compare
Atu2036 -7.3 -8.7 acetolactate synthase III, large subunit compare
Atu2650 -7.2 -12.1 glycerol-3-phosphate dehydrogenase compare
Atu2726 -7.2 -19.1 pyruvate carboxylase compare
Atu0432 -7.1 -8.5 O-succinylhomoserine sulfhydrylase compare
Atu3783 -7.1 -17.2 glutamate synthase subunit beta compare
Atu2709 -7.0 -16.3 3-isopropylmalate dehydratase, large subunit compare
Atu0400 -6.9 -4.8 orotate phosphoribosyltransferase compare
Atu1844 -6.9 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu0679 -6.8 -4.7 ATP phosphoribosyltransferase compare
Atu2264 -6.8 -11.4 2-isopropylmalate synthase compare
Atu3706 -6.8 -6.7 D-3-phosphoglycerate dehydrogenase compare
Atu1687 -6.8 -10.4 anthranilate phosphoribosyltransferase compare
Atu2289 -6.7 -16.2 anthranilate synthase component I and II compare
Atu1850 -6.5 -6.1 phosphoribosylformylglycinamidine synthetase II compare
Atu2040 -6.4 -4.4 phosphoserine phosphatase compare
Atu1141 -6.4 -8.8 Phosphoribosylglycinamide synthetase compare
Atu3885 -6.4 -7.7 inositol monophosphatase compare
Atu1075 -6.3 -7.5 amidophosphoribosyltransferase compare
Atu2791 -6.3 -8.6 3-isopropylmalate dehydrogenase compare
Atu1750 -6.3 -4.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu1205 -6.2 -13.8 threonine dehydratase compare
Atu2747 -6.2 -12.9 hypothetical protein compare
Atu1688 -6.2 -4.3 indole-3-glycerol-phosphate synthase compare
Atu3784 -6.1 -28.6 glutamate synthase large subunit compare
Atu0298 -6.1 -7.2 orotidine 5 compare
Atu1140 -6.1 -6.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0486 -6.1 -7.2 dihydroorotate dehydrogenase compare
Atu1308 -6.0 -6.7 aspartate carbamoyl transferase catalytic subunit compare
Atu0537 -6.0 -5.8 histidinol dehydrogenase compare
Atu2718 -6.0 -9.1 homoserine O-succinyltransferase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1588 -5.7 -9.9 homoserine dehydrogenase compare
Atu0678 -5.7 -5.5 histidyl-tRNA synthetase compare
Atu0647 -5.5 -5.4 phosphoribosylamine--glycine ligase compare
Atu0399 -5.5 -7.5 dihydroorotase compare
Atu3739 -5.5 -2.9 phosphoglycerate kinase compare
Atu2015 -5.2 -15.1 aminotransferase compare
Atu2790 -5.2 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu1307 -5.2 -8.6 dihydroorotase compare
Atu1686 -5.1 -20.9 peptidyl-prolyl cis-trans isomerse D compare
Atu3482 -5.1 -8.6 pantoate--beta-alanine ligase compare
Atu0043 -5.0 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu3483 -5.0 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0041 -4.9 -3.3 glutamine amidotransferase compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu3755 -4.7 -7.1 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3707 -4.7 -5.5 phosphoserine aminotransferase compare
Atu1446 -4.5 -4.4 two component response regulator compare
Atu0598 -4.3 -10.7 phosphogluconate dehydratase compare
Atu1463 -4.2 -8.8 glycine cleavage system component H compare
Atu0792 -4.0 -10.2 hypothetical protein compare
Atu4075 -3.9 -9.7 glycogen synthase compare
Atu3731 -3.7 -11.7 5-formyltetrahydrofolate cyclo-ligase compare
Atu3469 -3.6 -4.2 phosphoglyceromutase compare
Atu1359 -3.5 -2.0 dnaK deletion suppressor protein compare
Atu1462 -3.5 -17.0 glycine cleavage system protein P2 compare
Atu1589 -3.5 -10.8 aminotransferase, class I compare
Atu1464 -3.4 -8.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu0185 -3.4 -10.0 methylglyoxal synthase compare
Atu2548 -3.4 -18.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0641 -3.3 -5.5 hypothetical protein compare
Atu0723 -3.3 -2.3 FAD dependent oxidoreductase compare
Atu0184 -3.2 -4.0 glucokinase compare
Atu2155 -3.0 -18.8 methionine synthase compare
Atu1456 -2.9 -11.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1030 -2.9 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0040 -2.8 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4098 -2.8 -16.6 quinolinate synthetase compare
Atu3999 -2.7 -3.7 dithiobiotin synthetase compare
Atu1454 -2.6 -7.9 siroheme synthase compare
Atu3997 -2.6 -15.2 biotin synthetase compare
Atu4096 -2.5 -9.0 nicotinate-nucleotide pyrophosphorylase compare
Atu2205 -2.5 -6.9 transcriptional regulator, MarR family compare
Atu0029 -2.5 -6.6 S-adenosylhomocysteine hydrolase compare
Atu1455 -2.5 -2.4 hypothetical protein compare
Atu4097 -2.4 -9.8 L-aspartate oxidase compare
Atu2569 -2.4 -13.5 thiamine biosynthesis protein compare
Atu6114 -2.3 -2.9 hypothetical protein compare
Atu3289 -2.3 -6.9 thiamine-phosphate pyrophosphorylase compare
Atu3288 -2.3 -9.8 hydroxyethylthiazole kinase compare
Atu3998 -2.2 -12.5 8-amino-7-oxononanoate synthase compare
Atu0030 -2.2 -2.5 phosphocarrier protein HPr compare
Atu3290 -2.2 -8.6 phosphomethylpyrimidine kinase compare
Atu1604 -2.1 -14.1 poly-beta-hydroxybutyrate synthase compare
Atu4000 -2.1 -13.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu1748 -2.0 -7.9 NIFU-like protein compare
Atu4001 -1.9 -8.9 3-oxoacyl-ACP synthase compare
Atu0876 -1.9 -3.0 superoxide dismutase compare
Atu4616 -1.8 -3.5 dTDP-4-dehydrorhamnose reductase compare
Atu2127 -1.8 -8.7 L-carnitine dehydratase compare
Atu1457 -1.8 -2.4 hypothetical protein compare
Atu1572 -1.7 -8.1 hydrolase compare
Atu0361 -1.5 -3.7 transcriptional regulator compare
Atu2793 -1.5 -6.1 cobyrinic acid a,c-diamide synthase compare
Atu1526 -1.5 -8.3 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu5430 -1.5 -1.4 hypothetical protein compare
Atu2020 -1.4 -4.5 transcriptional regulator, TetR family compare
Atu1685 -1.4 -1.5 hypothetical protein compare
Atu0769 -1.4 -2.1 protoheme IX farnesyltransferase compare
Atu8115 -1.4 -3.3 Hypothetical Protein compare
Atu1891 -1.4 -4.2 cobalamin biosynthesis protein compare
Atu4173 -1.4 -3.3 phosphoenolpyruvate-protein phosphotransferase compare
Atu0434 -1.4 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2770 -1.3 -5.3 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu1447 -1.3 -3.2 two component sensor kinase compare
Atu3908 -1.3 -8.0 GntR family transcriptional regulator compare
Atu0346 -1.3 -1.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4773 -1.2 -2.2 two component response regulator compare
Atu2123 -1.2 -5.0 methylenetetrahydrofolate reductase compare
Atu2801 -1.2 -3.9 precorrin-2 C20 methyltransferase compare
Atu1620 -1.2 -7.4 triosephosphate isomerase compare
Atu4217 -1.1 -1.7 TetR family transcriptional regulator compare
Atu2808 -1.1 -5.5 cobyric acid synthase compare
Atu2439 -1.1 -1.1 hypothetical protein compare
Atu0419 -1.1 -2.3 two component sensor kinase compare
Atu2376 -1.1 -0.9 hypothetical protein compare
Atu0354 -1.1 -2.0 ferric uptake regulator compare
Atu2554 -1.1 -2.1 lysyl-tRNA synthetase compare
Atu3468 -1.1 -1.1 hypothetical protein compare
Atu2555 -1.1 -3.2 L-lysine 2,3-aminomutase compare
Atu2800 -1.0 -1.9 precorrin-3B C17-methyltransferase compare
Atu0332 -1.0 -4.3 RNA polymerase sigma-54 factor compare
Atu1542 -1.0 -3.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2809 -1.0 -6.1 cobalamin biosynthesis protein compare
Atu1774 -1.0 -6.9 ABC transporter, substrate binding protein (peptide) compare
Atu2795 -1.0 -5.2 cobalamin biosynthetic protein compare
Atu2209 -1.0 -3.4 pyrroline-5-carboxylate reductase compare
Atu4374 -1.0 -5.5 hypothetical protein compare
Atu4373 -1.0 -5.3 LacI family transcriptional regulator compare
Atu3518 -1.0 -6.6 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu3598 -1.0 -1.3 thiol:disulfide interchange protein compare
Atu0895 -1.0 -2.9 ABC transporter, substrate binding protein compare
Atu2802 -1.0 -4.2 precorrin-8X methylmutase compare
Atu1286 -1.0 -4.7 hypothetical protein compare
Atu2057 -1.0 -2.2 DNA helicase II compare
Atu2796 -0.9 -4.1 precorrin-4 C11-methyltransferase compare
Atu0590 -0.9 -4.9 transcriptional regulator repressor compare
Atu2805 -0.9 -5.5 cobalamin synthesis protein compare
Atu0115 -0.9 -1.1 hypothetical protein compare
Atu2640 -0.9 -3.7 hypothetical protein compare
Atu2472 -0.9 -1.9 hypothetical protein compare
Atu2804 -0.9 -5.8 cobaltochelatase subunit compare
Atu2083 -0.9 -3.6 DNA repair protein RecN compare
Atu0986 -0.9 -1.2 hypothetical protein compare
Atu2204 -0.9 -2.4 hypothetical protein compare
Atu3287 -0.8 -2.5 thiamine biosynthesis associated protein compare
Atu2798 -0.8 -2.6 precorrin-6y methyltransferase compare
Atu1223 -0.8 -0.9 hypothetical protein compare
Atu0601 -0.8 -5.5 oxidoreductase compare
Atu0837 -0.8 -4.0 transcriptional regulator, MarR family compare
Atu0422 -0.8 -1.6 ABC transporter, membrane spanning protein compare
Atu2799 -0.8 -3.0 precorrin-6x reductase compare
Atu2807 -0.8 -4.2 cob(I)alamin adenosyltransferase compare
Atu0189 -0.8 -2.5 ABC transporter, membrane spanning protein (peptide) compare
Atu4502 -0.8 -4.6 cobalamin synthesis protein compare
Atu4711 -0.8 -4.2 two component sensor kinase compare
Atu3732 -0.8 -4.4 hemolysin compare
Atu2684 -0.8 -1.7 hypothetical protein compare
Atu4317 -0.8 -2.0 TetR family transcriptional regulator compare
Atu3183 -0.8 -0.9 hypothetical protein compare
Atu0976 -0.8 -1.3 cycL protein compare
Atu1802 -0.8 -4.6 lactoylglutathione lyase compare
Atu5142 -0.8 -1.0 hypothetical protein compare
Atu2803 -0.7 -2.2 Cobalamin biosynthesis associated protein compare
Atu3727 -0.7 -2.7 hypothetical protein compare
Atu4375 -0.7 -5.0 hypothetical protein compare
Atu8156 -0.7 -1.7 hypothetical protein compare
Atu8023 -0.7 -1.6 hypothetical protein compare
Atu1445 -0.7 -1.8 two component sensor kinase compare
Atu2484 -0.7 -1.3 hypothetical protein compare
Atu8191 -0.7 -1.6 hypothetical protein compare
Atu8087 -0.7 -0.8 putative peptidoglycan binding protein compare
Atu2432 -0.7 -1.7 hypothetical protein compare
Atu2821 -0.7 -2.7 transcriptional regulator, GntR family compare
Atu0031 -0.7 -1.1 PTS system, IIA component compare
Atu0331 -0.7 -1.9 sigma-54 modulation protein compare
Atu1667 -0.7 -1.5 hypothetical protein compare
Atu1339 -0.7 -1.7 ribonuclease E compare
Atu2328 -0.7 -2.8 hypothetical protein compare
Atu3730 -0.7 -1.1 hypothetical protein compare
Atu8018 -0.7 -0.8 hypothetical protein compare
Atu1182 -0.7 -1.6 hypothetical protein compare
Atu0886 -0.7 -1.1 hypothetical protein compare
Atu3763 -0.7 -0.9 hypothetical protein compare
Atu0291 -0.6 -3.8 hypothetical protein compare
Atu6165 -0.6 -0.8 hypothetical protein compare
Atu8025 -0.6 -1.2 hypothetical protein compare
Atu2286 -0.6 -1.4 hypothetical protein compare
Atu1701 -0.6 -1.3 protein-L-isoaspartate O-methyltransferase compare
Atu2797 -0.6 -2.0 cobalamin biosynthesis protein compare
Atu0488 -0.6 -2.3 hypothetical protein compare
Atu1229 -0.6 -1.5 hypothetical protein compare
Atu2657 -0.6 -2.2 hypothetical protein compare
Atu0086 -0.6 -0.8 ribosome-binding factor A compare
Atu1026 -0.6 -1.8 hypothetical protein compare
Atu1801 -0.6 -1.9 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For carbon source D-Cellobiose in Agrobacterium fabrum C58

For carbon source D-Cellobiose across organisms