Experiment set2IT028 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with Lomefloxacin hydrochloride 0.025 mM

200 most detrimental genes:

  gene name fitness t score description  
Echvi_0589 +6.0 29.3 hypothetical protein compare
Echvi_1510 +5.9 14.9 bacillithiol biosynthesis cysteine-adding enzyme BshC compare
Echvi_1090 +5.9 9.4 Predicted membrane protein compare
Echvi_3743 +5.8 6.1 Transcriptional regulator compare
Echvi_0168 +5.2 24.9 Uncharacterized homolog of PSP1 compare
Echvi_1091 +5.1 5.9 Predicted divalent heavy-metal cations transporter compare
Echvi_2996 +4.5 22.6 polyphosphate kinase 1 compare
Echvi_1593 +4.4 15.3 Superoxide dismutase compare
Echvi_3440 +4.2 16.5 bacillithiol biosynthesis deacetylase BshB1 compare
Echvi_3683 +4.0 10.5 gliding motility-associated protein GldC compare
Echvi_4081 +3.8 12.1 Malic enzyme compare
Echvi_2135 +3.8 10.2 6-pyruvoyl-tetrahydropterin synthase compare
Echvi_1743 +3.3 16.6 alpha-L-glutamate ligases, RimK family compare
Echvi_2204 +3.1 21.6 ABC-type antimicrobial peptide transport system, ATPase component compare
Echvi_3043 +3.1 11.2 Peroxiredoxin compare
Echvi_3131 +2.9 19.3 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family compare
Echvi_0850 +2.8 6.9 Pterin-4a-carbinolamine dehydratase compare
Echvi_2129 +2.8 13.0 Predicted amidohydrolase compare
Echvi_3630 +2.7 4.3 Entner-Doudoroff aldolase compare
Echvi_3067 +2.5 20.3 Prolyl oligopeptidase family. compare
Echvi_2860 +2.4 4.7 sugar-phosphate isomerases, RpiB/LacA/LacB family compare
Echvi_2862 +2.4 6.3 glucose-6-phosphate 1-dehydrogenase compare
Echvi_2356 +2.3 11.3 MiaB-like tRNA modifying enzyme compare
Echvi_4422 +2.3 15.0 Aminopeptidase N compare
Echvi_1250 +2.2 7.5 hypothetical protein compare
Echvi_2506 +2.2 7.0 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
Echvi_4425 +2.2 13.6 RND family efflux transporter, MFP subunit compare
Echvi_2513 +2.2 10.2 Phenylalanine-4-hydroxylase compare
Echvi_4424 +2.1 16.6 Cation/multidrug efflux pump compare
Echvi_3443 +2.0 12.2 Domain of Unknown Function (DUF349). compare
Echvi_3113 +2.0 5.3 Putative heme degradation protein compare
Echvi_3296 +2.0 7.4 Deoxyhypusine synthase compare
Echvi_0301 +2.0 4.8 Short-chain dehydrogenases of various substrate specificities compare
Echvi_1592 +1.9 7.2 Cytosine/adenosine deaminases compare
Echvi_4611 +1.9 2.7 hypothetical protein compare
Echvi_3818 +1.9 6.4 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Echvi_0180 +1.8 4.4 transcription elongation factor GreA compare
Echvi_1745 +1.8 6.8 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family compare
Echvi_3917 +1.8 9.2 hypothetical protein compare
Echvi_1897 +1.8 8.4 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
Echvi_4418 +1.7 7.4 Protein of unknown function (DUF2911). compare
Echvi_2504 +1.7 3.5 Anthranilate/para-aminobenzoate synthases component I compare
Echvi_0048 +1.7 3.4 Pseudouridylate synthases, 23S RNA-specific compare
Echvi_4426 +1.7 10.6 Outer membrane protein compare
Echvi_1056 +1.7 2.8 exodeoxyribonuclease III compare
Echvi_2984 +1.7 7.3 hypothetical protein compare
Echvi_2428 +1.7 2.2 iojap-like ribosome-associated protein compare
Echvi_3952 +1.7 3.0 NAD-dependent aldehyde dehydrogenases compare
Echvi_1491 +1.6 3.0 export-related chaperone CsaA compare
Echvi_3612 +1.6 9.6 Imidazolonepropionase and related amidohydrolases compare
Echvi_3378 +1.5 3.4 Rhodanese-related sulfurtransferase compare
Echvi_4622 +1.5 7.1 hypothetical protein compare
Echvi_2059 +1.5 4.1 3-isopropylmalate dehydratase, large subunit compare
Echvi_0293 +1.5 3.5 hypothetical protein compare
Echvi_1993 +1.5 7.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Echvi_2346 +1.5 3.3 uncharacterized domain 1 compare
Echvi_0785 +1.4 11.2 Fatty acid desaturase. compare
Echvi_0767 +1.4 4.6 hypothetical protein compare
Echvi_2130 +1.4 7.0 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
Echvi_4476 +1.4 4.2 Nitrogen regulatory protein PII compare
Echvi_3456 +1.4 2.6 Uncharacterized protein conserved in bacteria compare
Echvi_1201 +1.4 4.9 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Echvi_0372 +1.4 3.4 conserved hypothetical protein, YceG family compare
Echvi_3998 +1.3 1.8 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog compare
Echvi_2861 +1.3 4.5 6-phosphogluconate dehydrogenase, decarboxylating compare
Echvi_3614 +1.3 7.9 Imidazolonepropionase and related amidohydrolases compare
Echvi_0302 +1.3 4.9 amidohydrolase compare
Echvi_4680 +1.3 6.0 Transcriptional regulators compare
Echvi_4477 +1.3 5.9 RND family efflux transporter, MFP subunit compare
Echvi_3292 +1.2 1.1 hypothetical protein compare
Echvi_3035 +1.2 6.2 hypothetical protein compare
Echvi_4679 +1.2 4.4 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
Echvi_4358 +1.2 3.1 Bacteroides conjugative transposon TraK protein compare
Echvi_0024 +1.2 4.4 Protein of unknown function (DUF1684). compare
Echvi_4024 +1.2 4.3 hypothetical protein compare
Echvi_4617 +1.2 7.7 Membrane-fusion protein compare
Echvi_4616 +1.2 7.8 ABC-type antimicrobial peptide transport system, permease component compare
Echvi_3613 +1.2 9.2 Imidazolonepropionase and related amidohydrolases conserved
Echvi_3075 +1.2 1.6 hypothetical protein compare
Echvi_0015 +1.2 3.3 succinyl-CoA synthetase, alpha subunit compare
Echvi_1256 +1.2 7.8 Predicted transcriptional regulators compare
Echvi_2892 +1.2 6.1 Protein of unknown function, DUF481. compare
Echvi_4357 +1.2 3.3 Protein of unknown function (DUF3714). compare
Echvi_0584 +1.1 6.6 peptide chain release factor 3 compare
Echvi_0679 +1.1 3.6 hypothetical protein compare
Echvi_1854 +1.1 2.5 tRNA compare
Echvi_4645 +1.1 3.1 GTP-binding protein LepA compare
Echvi_2271 +1.1 4.9 His Kinase A (phosphoacceptor) domain./Response regulator receiver domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_3439 +1.1 5.7 Membrane proteins related to metalloendopeptidases compare
Echvi_1286 +1.1 3.2 Transketolase, N-terminal subunit compare
Echvi_0760 +1.1 3.8 Predicted heme/steroid binding protein compare
Echvi_3708 +1.1 2.8 anti-anti-sigma factor compare
Echvi_2993 +1.1 3.4 Predicted CoA-binding protein compare
Echvi_2683 +1.1 2.5 hypothetical protein compare
Echvi_3918 +1.0 1.2 Histone H1-like protein Hc1. compare
Echvi_4021 +1.0 3.9 Cytochrome c peroxidase compare
Echvi_4475 +1.0 3.4 Divergent AAA domain. compare
Echvi_2893 +1.0 3.6 hypothetical protein compare
Echvi_1826 +1.0 5.0 Fructose-1,6-bisphosphatase compare
Echvi_3639 +1.0 2.3 Methionine synthase I (cobalamin-dependent), methyltransferase domain compare
Echvi_4375 +1.0 1.2 hypothetical protein compare
Echvi_0642 +1.0 4.9 pseudouridine synthase, RluA family compare
Echvi_0797 +1.0 5.5 Uncharacterised protein family (UPF0158). compare
Echvi_0186 +1.0 2.0 Predicted metal-binding, possibly nucleic acid-binding protein compare
Echvi_3291 +1.0 3.8 Predicted membrane protein compare
Echvi_4473 +0.9 4.5 Fe2+/Zn2+ uptake regulation proteins compare
Echvi_4427 +0.9 4.1 Transcriptional regulator compare
Echvi_0986 +0.9 3.5 Rrf2 family protein compare
Echvi_4678 +0.9 4.1 ABC-type Fe3+-siderophore transport system, permease component compare
Echvi_3800 +0.9 1.8 hypothetical protein compare
Echvi_0086 +0.9 4.9 Glycosyltransferases, probably involved in cell wall biogenesis compare
Echvi_4027 +0.9 5.0 hypothetical protein compare
Echvi_0329 +0.9 2.5 hypothetical protein compare
Echvi_0288 +0.9 3.9 Lauroyl/myristoyl acyltransferase compare
Echvi_2462 +0.9 3.0 hypothetical protein compare
Echvi_2297 +0.9 2.1 methionyl-tRNA synthetase/methionyl-tRNA synthetase C-terminal region/beta chain compare
Echvi_4100 +0.9 3.3 hypothetical protein compare
Echvi_2525 +0.9 4.1 GTP-binding protein YchF compare
Echvi_2960 +0.9 4.0 hypothetical protein compare
Echvi_3890 +0.9 2.0 hypothetical protein compare
Echvi_1900 +0.9 2.6 nitrite reductase [NAD(P)H], small subunit compare
Echvi_2389 +0.9 4.1 hypothetical protein compare
Echvi_1174 +0.9 4.8 Fe2+/Zn2+ uptake regulation proteins compare
Echvi_4069 +0.8 3.2 Enoyl-CoA hydratase/carnithine racemase compare
Echvi_0897 +0.8 1.5 hypothetical protein compare
Echvi_2954 +0.8 4.1 Nucleoside permease compare
Echvi_3407 +0.8 3.0 hypothetical protein compare
Echvi_2908 +0.8 3.7 succinyl-CoA synthetase, beta subunit compare
Echvi_2314 +0.8 2.9 beta-ketoacyl-acyl-carrier-protein synthase II compare
Echvi_0567 +0.8 4.1 outer membrane binding protein for glucose (SusD-like) (from data) compare
Echvi_4084 +0.8 1.0 glycine cleavage system H protein compare
Echvi_4600 +0.8 1.7 Uncharacterized conserved protein compare
Echvi_4115 +0.8 3.0 Nitrogen regulatory protein PII compare
Echvi_4079 +0.8 3.5 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Echvi_0517 +0.8 4.3 Glycoside hydrolase 97. compare
Echvi_2939 +0.8 2.9 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) compare
Echvi_3605 +0.8 3.4 Phospholipid N-methyltransferase compare
Echvi_0120 +0.8 4.0 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase / chorismate mutase (EC 2.5.1.54; EC 5.4.99.5) (from data) compare
Echvi_2468 +0.7 2.9 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family compare
Echvi_3519 +0.7 2.0 hypothetical protein compare
Echvi_2134 +0.7 1.8 hypothetical protein compare
Echvi_2647 +0.7 2.6 Helix-turn-helix. compare
Echvi_4398 +0.7 3.8 GDP-mannose 4,6-dehydratase compare
Echvi_2992 +0.7 4.0 Uncharacterized FAD-dependent dehydrogenases compare
Echvi_2108 +0.7 0.9 Predicted small integral membrane protein compare
Echvi_4347 +0.7 1.4 DNA repair proteins compare
Echvi_3241 +0.7 1.0 hypothetical protein compare
Echvi_0368 +0.7 2.1 hypothetical protein compare
Echvi_2442 +0.7 4.9 Predicted redox protein, regulator of disulfide bond formation compare
Echvi_3310 +0.7 3.2 Predicted Fe-S-cluster oxidoreductase compare
Echvi_0128 +0.7 1.1 hypothetical protein compare
Echvi_3308 +0.7 3.5 Uncharacterized protein conserved in bacteria compare
Echvi_1181 +0.7 4.6 Uridine kinase compare
Echvi_3755 +0.7 5.0 Outer membrane cobalamin receptor protein compare
Echvi_3053 +0.7 1.9 Membrane transporters of cations and cationic drugs compare
Echvi_1280 +0.7 1.6 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
Echvi_3332 +0.7 3.1 hypothetical protein compare
Echvi_0378 +0.7 1.3 hypothetical protein compare
Echvi_1378 +0.7 5.2 TonB-linked outer membrane protein, SusC/RagA family compare
Echvi_1236 +0.7 2.7 hypothetical protein compare
Echvi_2402 +0.7 1.3 hypothetical protein compare
Echvi_3091 +0.7 3.0 Malate/L-lactate dehydrogenases compare
Echvi_2047 +0.6 2.6 RNA polymerase sigma factor, sigma-70 family compare
Echvi_3641 +0.6 2.8 Uncharacterized conserved protein compare
Echvi_2891 +0.6 2.6 RNA polymerase sigma factor, sigma-70 family compare
Echvi_1157 +0.6 2.8 hypothetical protein compare
Echvi_3197 +0.6 1.6 hypothetical protein compare
Echvi_2679 +0.6 0.6 hypothetical protein compare
Echvi_3515 +0.6 2.3 Bacterial mobilisation protein (MobC). compare
Echvi_1752 +0.6 1.4 hypothetical protein compare
Echvi_4474 +0.6 1.8 hypothetical protein compare
Echvi_2240 +0.6 2.9 Glycosyltransferase family 28 C-terminal domain. compare
Echvi_0583 +0.6 2.4 Pseudouridylate synthases, 23S RNA-specific compare
Echvi_1196 +0.6 1.3 triosephosphate isomerase compare
Echvi_4677 +0.6 2.6 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
Echvi_1365 +0.6 1.5 hypothetical protein compare
Echvi_4549 +0.6 1.1 Histidine kinase./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. compare
Echvi_4149 +0.6 3.5 Predicted transcriptional regulators compare
Echvi_1287 +0.6 2.2 L-fucose isomerase and related proteins compare
Echvi_2633 +0.6 2.8 gamma-glutamylphosphate reductase (EC 1.2.1.41) (from data) compare
Echvi_1284 +0.6 2.3 ABC-type sugar transport system, periplasmic component compare
Echvi_0436 +0.6 1.2 Bacterial mobilisation protein (MobC). compare
Echvi_3691 +0.6 2.9 intracellular protease, PfpI family compare
Echvi_1725 +0.6 2.0 hypothetical protein compare
Echvi_3297 +0.6 3.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
Echvi_3648 +0.6 1.4 hypothetical protein compare
Echvi_0373 +0.6 2.8 acyl-CoA thioester hydrolase, YbgC/YbaW family compare
Echvi_3860 +0.6 1.6 hypothetical protein compare
Echvi_1282 +0.6 3.3 ABC-type sugar transport system, ATPase component compare
Echvi_2995 +0.6 2.3 hypothetical protein compare
Echvi_0370 +0.6 1.7 WbqC-like protein family. compare
Echvi_3735 +0.6 3.2 putative NAD(P)H quinone oxidoreductase, PIG3 family compare
Echvi_0650 +0.6 1.1 thioredoxin compare
Echvi_3822 +0.6 2.5 NAD-dependent aldehyde dehydrogenases compare
Echvi_3571 +0.6 3.1 hypothetical protein compare
Echvi_3584 +0.6 1.7 hypothetical protein compare
Echvi_2330 +0.6 1.3 hypothetical protein compare
Echvi_3915 +0.6 3.7 hypothetical protein compare
Echvi_3049 +0.6 2.0 Domain of unknown function (DU1801). compare
Echvi_3365 +0.6 2.6 Transcriptional regulator compare


Specific Phenotypes

For 29 genes in this experiment

For stress Lomefloxacin hydrochloride in Echinicola vietnamensis KMM 6221, DSM 17526

For stress Lomefloxacin hydrochloride across organisms