Experiment set2IT028 for Echinicola vietnamensis KMM 6221, DSM 17526

Compare to:

marine broth with Lomefloxacin hydrochloride 0.025 mM

Group: stress
Media: marine_broth_2216 + Lomefloxacin hydrochloride (0.025 mM)
Culturing: Cola_ML5, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.2 generations
By: Adam on 8-May-17
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 1725 B5

Specific Phenotypes

For 29 genes in this experiment

For stress Lomefloxacin hydrochloride in Echinicola vietnamensis KMM 6221, DSM 17526

For stress Lomefloxacin hydrochloride across organisms

SEED Subsystems

Subsystem #Specific
Cobalt-zinc-cadmium resistance 3
DNA repair, bacterial 2
Bacterial Cell Division 1
DNA-replication 1
De Novo Pyrimidine Synthesis 1
Heme, hemin uptake and utilization systems in GramPositives 1
Hemin transport system 1
KDO2-Lipid A biosynthesis 1
LMPTP YfkJ cluster 1
LMPTP YwlE cluster 1
Purine conversions 1
Ton and Tol transport systems 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
phenol degradation II (anaerobic) 4 1 1
CMP-3-deoxy-D-manno-octulosonate biosynthesis 5 5 1
UMP biosynthesis II 6 6 1
UMP biosynthesis I 6 5 1
UMP biosynthesis III 6 5 1
CMP-8-amino-3,8-dideoxy-D-manno-octulosonate biosynthesis 7 4 1
superpathway of pyrimidine ribonucleotides de novo biosynthesis 9 8 1
superpathway of (Kdo)2-lipid A biosynthesis 17 13 1
superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis 18 17 1
superpathway of Kdo2-lipid A biosynthesis 25 13 1
anaerobic aromatic compound degradation (Thauera aromatica) 27 2 1
superpathway of histidine, purine, and pyrimidine biosynthesis 46 42 1