Experiment set2IT027 for Pseudomonas sp. RS175

Compare to:

Sodium Fumarate dibasic carbon source 20 mM

200 most important genes:

  gene name fitness t score description  
PFR28_04889 -6.8 -4.7 C4-dicarboxylate transport transcriptional regulatory protein DctD conserved
PFR28_01365 -6.0 -4.2 hypothetical protein compare
PFR28_03697 -5.3 -17.1 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_05015 -5.3 -28.1 Glutamate synthase [NADPH] large chain compare
PFR28_05016 -5.2 -17.8 Glutamate synthase [NADPH] small chain compare
PFR28_03363 -5.2 -19.3 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_04278 -5.0 -13.8 Dihydroxy-acid dehydratase compare
PFR28_03241 -5.0 -15.0 C4-dicarboxylate transport protein 2 conserved
PFR28_02821 -4.7 -21.9 3-isopropylmalate dehydrogenase compare
PFR28_03612 -4.6 -6.9 Cell division protein ZapE compare
PFR28_03699 -4.5 -8.5 Acetolactate synthase isozyme 3 large subunit compare
PFR28_05105 -4.5 -13.1 Phosphoserine phosphatase SerB2 compare
PFR28_02811 -4.3 -7.2 Amidophosphoribosyltransferase compare
PFR28_02823 -4.1 -2.9 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_02603 -4.1 -10.1 Siroheme synthase compare
PFR28_04202 -4.0 -6.7 5,10-methylenetetrahydrofolate reductase compare
PFR28_01366 -3.9 -12.1 Sulfite reductase [ferredoxin] compare
PFR28_04308 -3.9 -4.6 Amino-acid acetyltransferase compare
PFR28_04834 -3.8 -18.8 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04932 -3.7 -7.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_03217 -3.7 -2.6 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_02824 -3.7 -8.5 3-isopropylmalate dehydratase large subunit compare
PFR28_04930 -3.6 -11.0 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_03635 -3.5 -6.7 Malate:quinone oxidoreductase compare
PFR28_00186 -3.5 -6.4 ATP phosphoribosyltransferase compare
PFR28_05125 -3.5 -9.6 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_03698 -3.4 -12.7 Acetolactate synthase isozyme 3 small subunit compare
PFR28_05005 -3.4 -13.9 NADP-dependent malic enzyme compare
PFR28_04832 -3.3 -12.0 putative phosphatase compare
PFR28_00966 -3.3 -17.8 HTH-type transcriptional regulator CysB compare
PFR28_02608 -3.1 -3.2 DNA translocase FtsK compare
PFR28_00187 -3.1 -13.1 Histidinol dehydrogenase compare
PFR28_00188 -3.1 -10.9 Histidinol-phosphate aminotransferase compare
PFR28_00305 -3.1 -10.7 2-isopropylmalate synthase compare
PFR28_04986 -3.0 -6.6 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_04890 -2.9 -8.6 C4-dicarboxylate transport sensor protein DctB conserved
PFR28_04933 -2.9 -3.8 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_04245 -2.9 -14.3 Homoserine O-succinyltransferase compare
PFR28_04985 -2.9 -4.0 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_02810 -2.8 -14.5 O-succinylhomoserine sulfhydrylase compare
PFR28_03718 -2.8 -6.6 Transcriptional regulatory protein ZraR compare
PFR28_03218 -2.8 -6.0 Phosphoribosylglycinamide formyltransferase compare
PFR28_04246 -2.7 -10.4 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_04929 -2.7 -4.6 Histidine biosynthesis bifunctional protein HisB compare
PFR28_01083 -2.5 -9.4 putative copper-importing P-type ATPase A compare
PFR28_01572 -2.5 -2.7 hypothetical protein compare
PFR28_03877 -2.4 -4.5 Holin-like protein CidA compare
PFR28_04425 -2.3 -10.6 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_01378 -2.3 -4.2 Magnesium-chelatase 38 kDa subunit compare
PFR28_05244 -2.3 -12.0 Copper-exporting P-type ATPase compare
PFR28_04842 -2.1 -5.8 D-3-phosphoglycerate dehydrogenase compare
PFR28_01081 -2.0 -6.5 hypothetical protein compare
PFR28_00988 -2.0 -8.8 Sensor histidine kinase RcsC compare
PFR28_04436 -2.0 -7.6 hypothetical protein compare
PFR28_04565 -1.9 -10.8 Protein RarD compare
PFR28_03876 -1.8 -6.9 Inner membrane protein YohK compare
PFR28_03427 -1.8 -7.7 Sensor histidine kinase RcsC compare
PFR28_03282 -1.8 -7.7 Arginine N-succinyltransferase subunit alpha compare
PFR28_04874 -1.8 -8.8 Phosphoenolpyruvate carboxykinase (ATP) compare
PFR28_01156 -1.8 -6.2 hypothetical protein compare
PFR28_04633 -1.7 -5.5 Alginate biosynthesis sensor protein KinB compare
PFR28_00194 -1.7 -8.5 Bifunctional enzyme CysN/CysC compare
PFR28_01113 -1.7 -4.1 DNA topoisomerase 1 compare
PFR28_00193 -1.7 -9.0 Sulfate adenylyltransferase subunit 2 compare
PFR28_05212 -1.6 -8.7 Sensor histidine kinase RcsC compare
PFR28_00356 -1.6 -5.2 Protein-glutamate methylesterase/protein-glutamine glutaminase compare
PFR28_01372 -1.6 -3.2 Precorrin-4 C(11)-methyltransferase compare
PFR28_04473 -1.6 -1.4 DNA-binding protein HU-beta compare
PFR28_01003 -1.5 -6.4 hypothetical protein compare
PFR28_00561 -1.5 -2.9 Phosphogluconate dehydratase compare
PFR28_04944 -1.5 -3.3 DNA-binding transcriptional regulator NtrC compare
PFR28_00839 -1.5 -6.3 hypothetical protein compare
PFR28_00837 -1.5 -5.4 hypothetical protein compare
PFR28_04698 -1.4 -5.9 hypothetical protein compare
PFR28_04521 -1.4 -4.2 HTH-type transcriptional regulator HexR compare
PFR28_00277 -1.4 -2.5 Queuine tRNA-ribosyltransferase compare
PFR28_03012 -1.4 -6.1 Phosphate acyltransferase compare
PFR28_03664 -1.4 -2.5 Ribosome-binding ATPase YchF compare
PFR28_04120 -1.3 -1.9 hypothetical protein compare
PFR28_04813 -1.3 -2.5 hypothetical protein compare
PFR28_04566 -1.3 -8.1 4-chloro-allylglycine synthase compare
PFR28_01460 -1.3 -1.1 Glutamine transport ATP-binding protein GlnQ compare
PFR28_01154 -1.2 -2.1 hypothetical protein compare
PFR28_04963 -1.2 -6.0 HTH-type transcriptional repressor NagR compare
PFR28_01114 -1.2 -5.4 hypothetical protein compare
PFR28_01362 -1.2 -1.7 hypothetical protein compare
PFR28_03420 -1.2 -3.3 hypothetical protein compare
PFR28_02283 -1.2 -2.1 hypothetical protein compare
PFR28_03844 -1.2 -4.5 Thiamine-phosphate synthase compare
PFR28_04344 -1.2 -3.0 Exopolyphosphatase compare
PFR28_04335 -1.2 -4.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PFR28_05205 -1.2 -4.0 Precorrin-8X methylmutase compare
PFR28_00271 -1.1 -3.6 hypothetical protein compare
PFR28_02100 -1.1 -2.3 hypothetical protein compare
PFR28_00425 -1.1 -7.4 Protein-L-isoaspartate O-methyltransferase compare
PFR28_03950 -1.1 -3.6 Transcriptional repressor NrdR compare
PFR28_01266 -1.1 -5.5 Oxaloacetate decarboxylase compare
PFR28_03412 -1.1 -4.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_03209 -1.1 -2.9 Corrinoid adenosyltransferase compare
PFR28_00678 -1.1 -2.7 hypothetical protein compare
PFR28_01313 -1.1 -3.0 hypothetical protein compare
PFR28_03202 -1.1 -1.7 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFR28_00688 -1.1 -1.7 hypothetical protein compare
PFR28_03203 -1.1 -5.5 Bifunctional adenosylcobalamin biosynthesis protein CobP compare
PFR28_04252 -1.0 -6.0 Thiazole synthase compare
PFR28_05130 -1.0 -5.8 Ribonuclease R compare
PFR28_05207 -1.0 -5.2 Siroheme synthase compare
PFR28_03208 -1.0 -6.0 Cobyrinate a,c-diamide synthase compare
PFR28_00098 -1.0 -4.3 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_03413 -1.0 -3.1 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_00064 -1.0 -6.4 Pyruvate dehydrogenase complex repressor compare
PFR28_03206 -1.0 -5.1 Cobalamin biosynthesis protein CobD compare
PFR28_00480 -1.0 -3.5 HTH-type transcriptional activator CmpR compare
PFR28_03242 -1.0 -5.7 hypothetical protein compare
PFR28_04377 -1.0 -3.7 hypothetical protein compare
PFR28_00695 -1.0 -1.4 Sulfur carrier protein TusA compare
PFR28_02841 -0.9 -1.0 hypothetical protein compare
PFR28_03296 -0.9 -1.4 hypothetical protein compare
PFR28_03281 -0.9 -3.5 Arginine N-succinyltransferase subunit beta compare
PFR28_03719 -0.9 -2.9 Poly(A) polymerase I compare
PFR28_04675 -0.9 -1.0 hypothetical protein compare
PFR28_02705 -0.9 -1.3 hypothetical protein compare
PFR28_04958 -0.9 -1.2 hypothetical protein compare
PFR28_05199 -0.9 -4.4 Precorrin-6A reductase compare
PFR28_02414 -0.9 -2.7 RNA polymerase-binding transcription factor DksA compare
PFR28_04113 -0.9 -2.4 DNA polymerase III PolC-type compare
PFR28_01267 -0.9 -2.8 Arginine N-succinyltransferase subunit beta compare
PFR28_01375 -0.9 -1.4 hypothetical protein compare
PFR28_00780 -0.9 -1.1 hypothetical protein compare
PFR28_03130 -0.9 -2.4 Streptothricin hydrolase compare
PFR28_04072 -0.9 -2.7 Bifunctional folate synthesis protein compare
PFR28_05006 -0.9 -7.8 Penicillin-binding protein 1A compare
PFR28_05201 -0.9 -2.3 Precorrin-6Y C(5,15)-methyltransferase [decarboxylating] compare
PFR28_04585 -0.8 -3.1 Chromosome partitioning protein ParA compare
PFR28_03204 -0.8 -4.3 Cobyric acid synthase compare
PFR28_02407 -0.8 -1.8 Na(+)/H(+) antiporter subunit G compare
PFR28_03625 -0.8 -6.3 Metalloprotease LoiP compare
PFR28_02232 -0.8 -1.2 hypothetical protein compare
PFR28_05206 -0.8 -5.6 Precorrin-2 C(20)-methyltransferase compare
PFR28_03272 -0.8 -1.5 Translational regulator CsrA2 compare
PFR28_03182 -0.8 -2.0 Recombination-associated protein RdgC compare
PFR28_05232 -0.8 -2.5 hypothetical protein compare
PFR28_01431 -0.8 -1.9 Chemotaxis protein CheW compare
PFR28_04699 -0.8 -5.3 Oligopeptidase A compare
PFR28_04403 -0.8 -1.2 hypothetical protein compare
PFR28_04692 -0.8 -4.8 hypothetical protein compare
PFR28_02243 -0.8 -3.5 putative ABC transporter ATP-binding protein NosF compare
PFR28_03388 -0.8 -5.1 Quinolinate synthase A compare
PFR28_03749 -0.8 -1.8 Outer membrane protein assembly factor BamD compare
PFR28_04567 -0.8 -5.2 hypothetical protein compare
PFR28_01730 -0.8 -3.1 hypothetical protein compare
PFR28_02451 -0.8 -2.6 Biotin biosynthesis cytochrome P450 compare
PFR28_01127 -0.8 -4.8 Soluble pyridine nucleotide transhydrogenase compare
PFR28_03316 -0.8 -2.3 Segregation and condensation protein B compare
PFR28_04476 -0.7 -3.0 Chorismate pyruvate-lyase compare
PFR28_03837 -0.7 -4.3 Leucine-responsive regulatory protein compare
PFR28_00424 -0.7 -3.6 '5'-nucleotidase SurE' transl_table=11 compare
PFR28_04945 -0.7 -2.3 Sensory histidine kinase/phosphatase NtrB compare
PFR28_01330 -0.7 -0.9 Glucose starvation-inducible protein B compare
PFR28_01312 -0.7 -1.9 HTH-type transcriptional regulator NorG compare
PFR28_00472 -0.7 -1.9 Protein RecA compare
PFR28_02527 -0.7 -3.1 hypothetical protein compare
PFR28_00593 -0.7 -5.6 HTH-type transcriptional regulator GntR compare
PFR28_01773 -0.7 -1.2 hypothetical protein compare
PFR28_01377 -0.7 -4.9 Aerobic cobaltochelatase subunit CobN compare
PFR28_03207 -0.7 -1.9 5,6-dimethylbenzimidazole synthase compare
PFR28_04611 -0.7 -2.6 hypothetical protein compare
PFR28_03860 -0.7 -2.7 putative murein peptide carboxypeptidase compare
PFR28_03322 -0.7 -1.4 hypothetical protein compare
PFR28_03200 -0.7 -2.1 Adenosylcobinamide-GDP ribazoletransferase compare
PFR28_04100 -0.7 -3.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_01976 -0.7 -2.3 hypothetical protein compare
PFR28_05204 -0.7 -1.6 Sulfite reductase [ferredoxin] compare
PFR28_00059 -0.7 -4.5 hypothetical protein compare
PFR28_04373 -0.7 -2.5 Iron-sulfur cluster assembly protein CyaY compare
PFR28_05144 -0.7 -1.7 hypothetical protein compare
PFR28_03279 -0.7 -3.7 N-succinylarginine dihydrolase compare
PFR28_00393 -0.7 -4.6 LL-diaminopimelate aminotransferase compare
PFR28_04931 -0.7 -1.1 hypothetical protein compare
PFR28_01031 -0.7 -2.3 Sensor protein QseC compare
PFR28_05198 -0.6 -2.5 hypothetical protein compare
PFR28_01616 -0.6 -2.0 HTH-type transcriptional regulator YofA compare
PFR28_01084 -0.6 -2.2 hypothetical protein compare
PFR28_02154 -0.6 -3.2 hypothetical protein compare
PFR28_04584 -0.6 -1.8 putative chromosome-partitioning protein ParB compare
PFR28_01666 -0.6 -1.7 hypothetical protein compare
PFR28_01092 -0.6 -1.5 Cbb3-type cytochrome c oxidase subunit CcoP1 compare
PFR28_01960 -0.6 -1.0 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase compare
PFR28_01181 -0.6 -2.8 hypothetical protein compare
PFR28_03596 -0.6 -1.7 Transcriptional regulator MraZ compare
PFR28_02867 -0.6 -1.8 putative RNA polymerase sigma factor FecI compare
PFR28_04396 -0.6 -2.6 HTH-type transcriptional regulator PuuR compare
PFR28_02345 -0.6 -3.9 hypothetical protein compare
PFR28_00139 -0.6 -3.9 HTH-type transcriptional regulator LutR compare
PFR28_02846 -0.6 -2.7 Adaptive-response sensory-kinase SasA compare
PFR28_03843 -0.6 -2.7 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase compare
PFR28_01037 -0.6 -4.4 Phosphoenolpyruvate synthase regulatory protein compare
PFR28_05091 -0.6 -4.6 Phosphomethylpyrimidine synthase compare
PFR28_00572 -0.6 -3.6 HTH-type transcriptional regulator HexR compare
PFR28_04998 -0.6 -1.6 ATP-dependent protease ATPase subunit HslU compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Sodium Fumarate dibasic in Pseudomonas sp. RS175

For carbon source Sodium Fumarate dibasic across organisms