Experiment set2IT026 for Escherichia coli BW25113

Compare to:

LB with Cephalothin sodium salt 0.01 mg/ml

Genes with specific phenotypes:

  gene name fitness t score description  
b4392 slt -3.3 -5.4 soluble lytic murein transglycosylase (VIMSS) conserved
b0433 ampG -3.2 -5.7 muropeptide transporter (NCBI) conserved
b2174 b2174 -2.5 -6.8 orf, hypothetical protein (VIMSS) compare
b2290 yfbQ -2.4 -8.7 aspartate aminotransferase (NCBI) compare
b2813 mltA -2.4 -7.0 membrane-bound lytic murein transglycosylase A (NCBI) compare
b2593 yfiH -2.0 -7.1 hypothetical protein (NCBI) conserved
b3116 tdcC -1.9 -8.1 L-threonine/L-serine transporter (NCBI) compare
b3807 cyaY -1.8 -5.8 frataxin-like protein (NCBI) compare
b0877 ybjX -1.7 -5.6 hypothetical protein (NCBI) compare
b0955 ycbZ -1.6 -5.0 predicted peptidase (NCBI) compare
b0820 ybiT -1.6 -5.4 fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b3932 hslV -1.5 -7.0 ATP-dependent protease peptidase subunit (NCBI) compare
b0633 rlpA -1.5 -6.0 minor lipoprotein (NCBI) compare
b4049 dusA -1.5 -5.0 tRNA-dihydrouridine synthase A (RefSeq) compare
b3363 ppiA -1.5 -5.1 peptidyl-prolyl cis-trans isomerase A (rotamase A) (NCBI) compare
b4208 cycA -1.4 -5.6 D-alanine/D-serine/glycine transporter (NCBI) compare
b3472 b3472 -1.4 -5.0 orf, hypothetical protein (VIMSS) compare
b2558 mltF -1.3 -6.9 predicted periplasmic binding protein/transglycosylase (RefSeq) conserved
b4240 treB -1.3 -6.6 fused trehalose(maltose)-specific PTS enzyme: IIB component/IIC component (NCBI) compare
b2041 rfbB -1.3 -7.8 dTDP-glucose 4,6 dehydratase, NAD(P)-binding (NCBI) compare
b4324 uxuR -1.2 -5.5 DNA-binding transcriptional repressor (NCBI) compare
b4233 mpl -1.1 -5.4 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase (NCBI) conserved
b4452 gadY +1.0 7.3 unknown RNA (NCBI) compare
b2587 kgtP +1.3 5.5 alpha-ketoglutarate transporter (NCBI) compare
b3283 yrdD +1.4 8.9 predicted DNA topoisomerase (NCBI) compare
b3009 yghB +1.4 6.5 conserved inner membrane protein (NCBI) conserved
b0441 ppiD +1.4 9.2 peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI) compare
b3146 yraL +1.4 7.3 predicted methyltransferase (NCBI) compare
b3673 emrD +1.5 10.0 2-module integral membrane pump; multidrug resistance (VIMSS) compare
b4153 frdB +1.5 5.1 fumarate reductase (anaerobic), Fe-S subunit (NCBI) compare
b1632 rsxE +1.5 6.5 NADH-ubiquinone oxidoreductase (NCBI) compare
b2821 ptr +1.5 9.3 protease III (NCBI) conserved
b2186 yejK +1.5 9.5 nucleoid-associated protein NdpA (NCBI) compare
b3197 kdsD +1.5 5.1 D-arabinose 5-phosphate isomerase (NCBI) compare
b0125 hpt +1.5 5.5 hypoxanthine phosphoribosyltransferase (VIMSS) compare
b3515 gadW +1.6 6.8 DNA-binding transcriptional activator (NCBI) compare
b3749 rbsA +1.6 7.9 fused D-ribose transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b0148 hrpB +1.6 6.4 helicase, ATP-dependent (VIMSS) compare
b2393 nupC +1.7 8.2 nucleoside (except guanosine) transporter (NCBI) compare
b3347 fkpA +1.7 13.2 FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI) compare
b2029 gnd +1.8 9.6 6-phosphogluconate dehydrogenase (NCBI) compare
b0065 yabI +1.8 6.8 conserved inner membrane protein (NCBI) compare
b1238 tdk +1.9 8.8 thymidine kinase (NCBI) compare
b0678 nagB +1.9 5.4 glucosamine-6-phosphate deaminase (NCBI) compare
b2214 yojL +2.1 8.8 predicted thiamine biosynthesis lipoprotein (NCBI) compare
b3392 yrfA +2.2 7.7 orf, hypothetical protein (VIMSS) compare
b3751 rbsB +2.3 6.4 D-ribose transporter subunit (NCBI) compare
b0147 yadP +2.3 9.9 orf, hypothetical protein (VIMSS) compare
b0393 rdgC +2.3 15.1 recombination associated protein (NCBI) compare
b3780 rhlB +2.4 16.1 ATP-dependent RNA helicase (NCBI) compare
b3391 hofQ +2.6 9.9 predicted fimbrial transporter (NCBI) compare
b0122 yacC +2.8 10.4 orf, hypothetical protein (VIMSS) compare
b2749 ygbE +3.1 14.3 conserved inner membrane protein (NCBI) conserved
b0418 pgpA +3.2 14.3 phosphatidylglycerophosphatase A (NCBI) compare


Specific phenotypes for stress Cephalothin sodium salt across organisms