Experiment set2IT025 for Agrobacterium fabrum C58

Compare to:

L-Fucose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -9.2 -6.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu1140 -7.5 -7.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0099 -7.4 -10.2 prephenate dehydratase compare
Atu3706 -7.2 -5.0 D-3-phosphoglycerate dehydrogenase compare
Atu0679 -7.2 -5.0 ATP phosphoribosyltransferase compare
Atu2709 -7.2 -15.4 3-isopropylmalate dehydratase, large subunit compare
Atu1844 -7.2 -4.9 Phosphoribosylformylglycinamidine synthetase compare
Atu1141 -7.1 -8.5 Phosphoribosylglycinamide synthetase compare
Atu1687 -7.1 -11.8 anthranilate phosphoribosyltransferase compare
Atu0035 -7.0 -10.8 phosphoenolpyruvate carboxykinase compare
Atu3783 -6.9 -16.6 glutamate synthase subunit beta compare
Atu1075 -6.9 -6.7 amidophosphoribosyltransferase compare
Atu2726 -6.8 -20.7 pyruvate carboxylase compare
Atu3885 -6.8 -6.7 inositol monophosphatase compare
Atu2036 -6.8 -13.8 acetolactate synthase III, large subunit compare
Atu1850 -6.8 -6.5 phosphoribosylformylglycinamidine synthetase II compare
Atu1620 -6.7 -12.1 triosephosphate isomerase compare
Atu1588 -6.7 -9.2 homoserine dehydrogenase compare
Atu1205 -6.6 -14.8 threonine dehydratase compare
Atu2040 -6.6 -4.6 phosphoserine phosphatase compare
Atu3784 -6.5 -29.2 glutamate synthase large subunit compare
Atu0486 -6.4 -7.6 dihydroorotate dehydrogenase compare
Atu2650 -6.4 -12.0 glycerol-3-phosphate dehydrogenase compare
Atu3740 -6.4 -11.4 fructose bisphosphate aldolase compare
Atu0678 -6.3 -4.4 histidyl-tRNA synthetase compare
Atu1845 -6.3 -5.1 phosphoribosylformylglycinamidine synthase I compare
Atu0537 -6.3 -6.1 histidinol dehydrogenase compare
Atu4505 -6.2 -11.1 LacI family transcriptional regulator compare
Atu2264 -6.2 -15.4 2-isopropylmalate synthase compare
Atu0038 -6.1 -7.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3754 -6.1 -7.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2791 -5.9 -9.9 3-isopropylmalate dehydrogenase compare
Atu3755 -5.9 -7.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0399 -5.8 -8.8 dihydroorotase compare
Atu0298 -5.8 -9.4 orotidine 5 compare
Atu0400 -5.7 -7.1 orotate phosphoribosyltransferase compare
Atu2015 -5.5 -17.9 aminotransferase compare
Atu2115 -5.4 -14.2 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0043 -5.3 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu0432 -5.3 -9.8 O-succinylhomoserine sulfhydrylase compare
Atu2790 -5.3 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu1688 -5.3 -9.6 indole-3-glycerol-phosphate synthase compare
Atu1359 -5.2 -2.1 dnaK deletion suppressor protein compare
Atu0041 -5.2 -3.6 glutamine amidotransferase compare
Atu0039 -5.1 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -5.1 -3.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3469 -5.0 -3.5 phosphoglyceromutase compare
Atu3739 -5.0 -4.0 phosphoglycerate kinase compare
Atu1686 -4.9 -18.5 peptidyl-prolyl cis-trans isomerse D compare
Atu3707 -4.9 -5.3 phosphoserine aminotransferase compare
Atu0647 -4.8 -9.8 phosphoribosylamine--glycine ligase compare
Atu1308 -4.8 -9.0 aspartate carbamoyl transferase catalytic subunit compare
Atu2811 -4.8 -10.4 hypothetical protein conserved
Atu2814 -4.7 -9.5 zinc-binding dehydrogenase compare
Atu1307 -4.2 -11.1 dihydroorotase compare
Atu2813 -4.0 -19.4 altronate oxidoreductase compare
Atu0014 -3.9 -15.0 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase conserved
Atu4466 -3.9 -9.9 oxidoreductase conserved
Atu4096 -3.9 -10.0 nicotinate-nucleotide pyrophosphorylase compare
Atu0346 -3.8 -5.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0017 -3.8 -4.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1685 -3.8 -2.1 hypothetical protein compare
Atu1454 -3.6 -13.0 siroheme synthase compare
Atu2289 -3.6 -20.8 anthranilate synthase component I and II compare
Atu2812 -3.5 -6.5 hypothetical protein conserved
Atu0434 -3.5 -4.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2718 -3.4 -7.7 homoserine O-succinyltransferase compare
Atu4098 -3.4 -14.0 quinolinate synthetase compare
Atu0062 -3.4 -11.0 transcriptional regulator, ROK family compare
Atu1456 -3.2 -15.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0040 -3.1 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3288 -3.0 -12.3 hydroxyethylthiazole kinase compare
Atu6098 -3.0 -1.2 transcriptional regulator, HTH family compare
Atu0030 -3.0 -2.9 phosphocarrier protein HPr compare
Atu1748 -2.9 -12.2 NIFU-like protein compare
Atu3289 -2.9 -6.7 thiamine-phosphate pyrophosphorylase compare
Atu1455 -2.8 -6.1 hypothetical protein compare
Atu3290 -2.8 -12.4 phosphomethylpyrimidine kinase compare
Atu2815 -2.8 -12.1 hypothetical protein conserved
Atu1589 -2.8 -5.5 aminotransferase, class I compare
Atu3730 -2.8 -2.6 hypothetical protein compare
Atu1604 -2.7 -17.7 poly-beta-hydroxybutyrate synthase compare
Atu0723 -2.7 -3.1 FAD dependent oxidoreductase compare
Atu4097 -2.6 -12.1 L-aspartate oxidase compare
Atu0792 -2.5 -7.7 hypothetical protein compare
Atu2569 -2.5 -14.2 thiamine biosynthesis protein compare
Atu2155 -2.5 -17.5 methionine synthase compare
Atu3997 -2.4 -14.5 biotin synthetase compare
Atu0876 -2.3 -3.8 superoxide dismutase compare
Atu2548 -2.3 -13.3 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2747 -2.1 -12.8 hypothetical protein compare
Atu3998 -2.0 -12.5 8-amino-7-oxononanoate synthase compare
Atu2816 -2.0 -11.6 oxidoreductase conserved
Atu3162 -2.0 -10.6 LacI family transcriptional regulator compare
Atu1457 -2.0 -3.6 hypothetical protein compare
Atu4773 -1.9 -3.0 two component response regulator compare
Atu4000 -1.8 -13.7 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0029 -1.8 -6.4 S-adenosylhomocysteine hydrolase compare
Atu3999 -1.8 -3.8 dithiobiotin synthetase compare
Atu4001 -1.8 -10.6 3-oxoacyl-ACP synthase compare
Atu3219 -1.7 -10.9 dihydroxy-acid dehydratase compare
Atu0769 -1.7 -2.6 protoheme IX farnesyltransferase compare
Atu4711 -1.7 -7.4 two component sensor kinase compare
Atu1542 -1.7 -6.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu3287 -1.6 -4.7 thiamine biosynthesis associated protein compare
Atu2123 -1.5 -7.4 methylenetetrahydrofolate reductase compare
Atu8115 -1.5 -4.3 Hypothetical Protein compare
Atu2807 -1.5 -7.5 cob(I)alamin adenosyltransferase compare
Atu1217 -1.5 -5.7 cysteine synthase compare
Atu3763 -1.4 -1.6 hypothetical protein compare
Atu1572 -1.4 -6.5 hydrolase compare
Atu3712 -1.4 -2.1 hypothetical protein compare
Atu2684 -1.4 -2.9 hypothetical protein compare
Atu2808 -1.4 -9.0 cobyric acid synthase compare
Atu5142 -1.4 -2.1 hypothetical protein compare
Atu1446 -1.4 -3.7 two component response regulator compare
Atu4317 -1.4 -3.3 TetR family transcriptional regulator compare
Atu6114 -1.4 -2.3 hypothetical protein compare
Atu2554 -1.3 -2.6 lysyl-tRNA synthetase compare
Atu0837 -1.3 -7.7 transcriptional regulator, MarR family compare
Atu1564 -1.3 -9.1 hypothetical protein conserved
Atu2800 -1.3 -3.1 precorrin-3B C17-methyltransferase compare
Atu0536 -1.3 -7.5 hypothetical protein compare
Atu2207 -1.3 -4.8 two component sensor kinase compare
Atu2209 -1.3 -4.7 pyrroline-5-carboxylate reductase compare
Atu2127 -1.3 -7.7 L-carnitine dehydratase compare
Atu1810 -1.2 -1.8 hypothetical protein compare
Atu2020 -1.2 -1.9 transcriptional regulator, TetR family compare
Atu0641 -1.2 -4.1 hypothetical protein compare
Atu2795 -1.2 -6.8 cobalamin biosynthetic protein compare
Atu2267 -1.2 -5.8 hypothetical protein compare
Atu2804 -1.2 -7.7 cobaltochelatase subunit compare
Atu1163 -1.2 -2.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2504 -1.2 -5.4 transcriptional regulator, GntR family compare
Atu0977 -1.2 -4.3 serine protease DO-like protease compare
Atu1219 -1.1 -1.6 hypothetical protein compare
Atu2802 -1.1 -6.0 precorrin-8X methylmutase compare
Atu1546 -1.1 -3.3 transcriptional regulator, MerR family compare
Atu2799 -1.1 -4.1 precorrin-6x reductase compare
Atu2809 -1.1 -6.1 cobalamin biosynthesis protein compare
Atu0115 -1.1 -1.3 hypothetical protein compare
Atu2803 -1.1 -4.3 Cobalamin biosynthesis associated protein compare
Atu2805 -1.0 -5.3 cobalamin synthesis protein compare
Atu1891 -1.0 -2.4 cobalamin biosynthesis protein compare
Atu2286 -1.0 -1.9 hypothetical protein compare
Atu4173 -1.0 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
Atu8099 -1.0 -2.0 hypothetical protein compare
Atu2318 -1.0 -5.9 L-lactate dehydrogenase conserved
Atu2428 -1.0 -7.5 exopolysaccharide production protein PssB compare
Atu3482 -1.0 -6.5 pantoate--beta-alanine ligase compare
Atu2818 -1.0 -5.7 ABC transporter, membrane spanning protein (ribose) compare
Atu3908 -1.0 -5.6 GntR family transcriptional regulator compare
Atu0189 -1.0 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu5115 -1.0 -1.4 hypothetical protein compare
Atu0803 -1.0 -7.7 pyruvate,orthophosphate dikinase compare
Atu1028 -0.9 -2.4 hypothetical protein compare
Atu0401 -0.9 -2.4 fructokinase compare
Atu3598 -0.9 -2.6 thiol:disulfide interchange protein compare
Atu2793 -0.9 -4.0 cobyrinic acid a,c-diamide synthase compare
Atu1103 -0.9 -2.3 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0190 -0.9 -5.5 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1774 -0.9 -5.1 ABC transporter, substrate binding protein (peptide) compare
Atu5427 -0.9 -1.7 hypothetical protein compare
Atu8054 -0.9 -0.5 hypothetical protein compare
Atu5513 -0.9 -1.5 cold shock protein compare
Atu1242 -0.9 -5.9 cytochrome oxidase assembly factor compare
Atu0981 -0.9 -7.1 glutamate-ammonia-ligase adenylyltransferase compare
Atu0770 -0.9 -4.6 cytochrome C oxidase assembly protein compare
Atu2484 -0.8 -1.5 hypothetical protein compare
Atu1770 -0.8 -4.8 glutamine synthetase compare
Atu4446 -0.8 -6.0 hypothetical protein compare
Atu0272 -0.8 -3.6 transcriptional regulator, MarR family compare
Atu2817 -0.8 -4.4 ABC transporter, substrate binding protein (ribose) compare
Atu1847 -0.8 -1.4 hypothetical protein compare
Atu0188 -0.8 -2.6 ABC transporter, membrane spanning protein (peptide) compare
Atu2796 -0.8 -3.7 precorrin-4 C11-methyltransferase compare
Atu0405 -0.8 -5.9 long-chain-fatty-acid-CoA-ligase compare
Atu0677 -0.8 -1.0 hypothetical protein compare
Atu3518 -0.8 -4.6 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu1462 -0.8 -6.3 glycine cleavage system protein P2 compare
Atu3483 -0.7 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2335 -0.7 -2.0 hypothetical protein compare
Atu4346 -0.7 -2.6 hypothetical protein compare
Atu3485 -0.7 -5.2 short chain dehydrogenase compare
Atu0768 -0.7 -4.6 cytochrome-c oxidase chain I compare
Atu0291 -0.7 -3.9 hypothetical protein compare
Atu0498 -0.7 -3.8 hypothetical protein compare
Atu3532 -0.7 -3.5 GntR family transcriptional regulator compare
Atu1463 -0.7 -3.2 glycine cleavage system component H compare
Atu1629 -0.7 -1.1 transcriptional regulator, ArsR family compare
Atu0887 -0.7 -3.8 acetyltransferase compare
Atu4477 -0.7 -3.2 TetR family transcriptional regulator compare
Atu2819 -0.7 -5.2 ABC transporter, nucleotide binding/ATPase protein (ribose) compare
Atu3095 -0.7 -2.3 hypothetical protein compare
Atu3337 -0.7 -4.0 LacI family transcriptional regulator compare
Atu1712 -0.7 -4.4 deoxyguanosinetriphosphate triphosphohydrolase compare
Atu1286 -0.7 -2.2 hypothetical protein compare
Atu0771 -0.6 -3.9 cytochrome c oxidase subunit III compare
Atu0386 -0.6 -1.5 hypothetical protein compare
Atu0606 -0.6 -2.0 hypothetical protein compare


Specific Phenotypes

For 19 genes in this experiment

For carbon source L-Fucose in Agrobacterium fabrum C58

For carbon source L-Fucose across organisms