Experiment set2IT024 for Agrobacterium fabrum C58

Compare to:

L-Fucose carbon source

200 most important genes:

  gene name fitness t score description  
Atu0038 -7.8 -5.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3740 -7.2 -7.0 fructose bisphosphate aldolase compare
Atu1588 -7.1 -7.0 homoserine dehydrogenase compare
Atu0099 -7.1 -8.4 prephenate dehydratase compare
Atu0298 -7.0 -4.8 orotidine 5 compare
Atu2791 -7.0 -6.8 3-isopropylmalate dehydrogenase compare
Atu0400 -6.9 -4.8 orotate phosphoribosyltransferase compare
Atu0486 -6.8 -6.6 dihydroorotate dehydrogenase compare
Atu1141 -6.7 -7.4 Phosphoribosylglycinamide synthetase compare
Atu2650 -6.6 -11.1 glycerol-3-phosphate dehydrogenase compare
Atu2036 -6.6 -12.7 acetolactate synthase III, large subunit compare
Atu1687 -6.5 -10.9 anthranilate phosphoribosyltransferase compare
Atu3706 -6.5 -7.7 D-3-phosphoglycerate dehydrogenase compare
Atu1140 -6.5 -6.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0679 -6.4 -6.3 ATP phosphoribosyltransferase compare
Atu2264 -6.4 -12.4 2-isopropylmalate synthase compare
Atu2709 -6.4 -16.1 3-isopropylmalate dehydratase, large subunit compare
Atu1850 -6.4 -4.3 phosphoribosylformylglycinamidine synthetase II compare
Atu4505 -6.3 -10.6 LacI family transcriptional regulator compare
Atu3783 -6.3 -18.2 glutamate synthase subunit beta compare
Atu1750 -6.3 -3.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu3755 -6.2 -4.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3784 -6.2 -27.0 glutamate synthase large subunit compare
Atu2726 -6.2 -21.7 pyruvate carboxylase compare
Atu0537 -6.2 -4.3 histidinol dehydrogenase compare
Atu1688 -6.1 -4.2 indole-3-glycerol-phosphate synthase compare
Atu1845 -6.1 -4.1 phosphoribosylformylglycinamidine synthase I compare
Atu3707 -6.1 -4.2 phosphoserine aminotransferase compare
Atu0399 -6.0 -5.8 dihydroorotase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1075 -5.7 -7.8 amidophosphoribosyltransferase compare
Atu1205 -5.7 -14.3 threonine dehydratase compare
Atu3885 -5.6 -10.1 inositol monophosphatase compare
Atu0678 -5.6 -5.5 histidyl-tRNA synthetase compare
Atu0035 -5.5 -12.0 phosphoenolpyruvate carboxykinase compare
Atu2040 -5.5 -6.5 phosphoserine phosphatase compare
Atu1308 -5.5 -6.0 aspartate carbamoyl transferase catalytic subunit compare
Atu3754 -5.4 -8.6 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1620 -5.4 -13.5 triosephosphate isomerase compare
Atu3739 -5.4 -3.0 phosphoglycerate kinase compare
Atu1844 -5.3 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu1307 -5.1 -7.2 dihydroorotase compare
Atu2790 -5.1 -3.0 3-isopropylmalate dehydratase, small subunit compare
Atu0647 -5.1 -6.0 phosphoribosylamine--glycine ligase compare
Atu1686 -5.1 -19.7 peptidyl-prolyl cis-trans isomerse D compare
Atu0043 -5.0 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu2115 -5.0 -13.3 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu3469 -4.7 -3.3 phosphoglyceromutase compare
Atu2015 -4.7 -14.2 aminotransferase compare
Atu0014 -4.5 -13.2 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase conserved
Atu2814 -4.4 -8.0 zinc-binding dehydrogenase compare
Atu2812 -4.2 -6.9 hypothetical protein conserved
Atu0432 -4.0 -12.1 O-succinylhomoserine sulfhydrylase compare
Atu2813 -4.0 -15.3 altronate oxidoreductase compare
Atu0041 -3.9 -3.2 glutamine amidotransferase compare
Atu1456 -3.7 -12.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0346 -3.7 -5.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0062 -3.6 -9.4 transcriptional regulator, ROK family compare
Atu2811 -3.6 -11.6 hypothetical protein conserved
Atu1030 -3.6 -2.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1359 -3.5 -2.1 dnaK deletion suppressor protein compare
Atu2289 -3.4 -18.3 anthranilate synthase component I and II compare
Atu1685 -3.4 -2.0 hypothetical protein compare
Atu2718 -3.4 -9.6 homoserine O-succinyltransferase compare
Atu4098 -3.3 -16.9 quinolinate synthetase compare
Atu1455 -3.3 -6.0 hypothetical protein compare
Atu3290 -3.2 -14.2 phosphomethylpyrimidine kinase compare
Atu0792 -3.2 -9.4 hypothetical protein compare
Atu1454 -3.1 -6.0 siroheme synthase compare
Atu4466 -3.1 -5.3 oxidoreductase conserved
Atu4096 -3.1 -8.5 nicotinate-nucleotide pyrophosphorylase compare
Atu2815 -3.0 -9.6 hypothetical protein conserved
Atu4097 -2.8 -12.7 L-aspartate oxidase compare
Atu0040 -2.8 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1589 -2.7 -6.8 aminotransferase, class I compare
Atu3289 -2.7 -4.3 thiamine-phosphate pyrophosphorylase compare
Atu1604 -2.7 -15.4 poly-beta-hydroxybutyrate synthase compare
Atu2155 -2.7 -15.5 methionine synthase compare
Atu3997 -2.7 -17.9 biotin synthetase compare
Atu0434 -2.6 -3.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3288 -2.6 -10.4 hydroxyethylthiazole kinase compare
Atu2569 -2.5 -15.2 thiamine biosynthesis protein compare
Atu0723 -2.5 -2.7 FAD dependent oxidoreductase compare
Atu1748 -2.5 -7.5 NIFU-like protein compare
Atu0029 -2.4 -6.1 S-adenosylhomocysteine hydrolase compare
Atu1457 -2.4 -2.7 hypothetical protein compare
Atu2548 -2.4 -14.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3730 -2.3 -1.4 hypothetical protein compare
Atu2747 -2.2 -12.0 hypothetical protein compare
Atu2816 -2.2 -13.7 oxidoreductase conserved
Atu0641 -2.2 -5.1 hypothetical protein compare
Atu4000 -2.1 -15.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0769 -2.1 -3.0 protoheme IX farnesyltransferase compare
Atu2368 -2.1 -2.3 hypothetical protein compare
Atu0030 -2.0 -2.4 phosphocarrier protein HPr compare
Atu4711 -2.0 -8.2 two component sensor kinase compare
Atu3998 -2.0 -9.8 8-amino-7-oxononanoate synthase compare
Atu3287 -2.0 -4.4 thiamine biosynthesis associated protein compare
Atu3219 -1.9 -12.4 dihydroxy-acid dehydratase compare
Atu2123 -1.9 -3.8 methylenetetrahydrofolate reductase compare
Atu3999 -1.9 -2.9 dithiobiotin synthetase compare
Atu1891 -1.8 -5.2 cobalamin biosynthesis protein compare
Atu2127 -1.8 -7.2 L-carnitine dehydratase compare
Atu4773 -1.7 -2.5 two component response regulator compare
Atu3162 -1.7 -9.1 LacI family transcriptional regulator compare
Atu4001 -1.7 -7.4 3-oxoacyl-ACP synthase compare
Atu5142 -1.7 -2.2 hypothetical protein compare
Atu4317 -1.7 -3.8 TetR family transcriptional regulator compare
Atu2020 -1.5 -3.0 transcriptional regulator, TetR family compare
Atu0189 -1.5 -3.0 ABC transporter, membrane spanning protein (peptide) compare
Atu8115 -1.5 -3.7 Hypothetical Protein compare
Atu0876 -1.5 -2.8 superoxide dismutase compare
Atu2318 -1.4 -8.0 L-lactate dehydrogenase conserved
Atu6114 -1.4 -2.5 hypothetical protein compare
Atu2795 -1.4 -6.2 cobalamin biosynthetic protein compare
Atu5540 -1.4 -1.0 hypothetical protein compare
Atu3598 -1.4 -3.3 thiol:disulfide interchange protein compare
Atu1904 -1.4 -1.8 transcriptional regulator compare
Atu1217 -1.3 -6.4 cysteine synthase compare
Atu6098 -1.3 -0.8 transcriptional regulator, HTH family compare
Atu1564 -1.3 -7.5 hypothetical protein conserved
Atu1810 -1.3 -1.6 hypothetical protein compare
Atu2793 -1.3 -3.9 cobyrinic acid a,c-diamide synthase compare
Atu2504 -1.3 -4.5 transcriptional regulator, GntR family compare
Atu2808 -1.2 -6.7 cobyric acid synthase compare
Atu1542 -1.2 -5.0 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2796 -1.2 -4.6 precorrin-4 C11-methyltransferase compare
Atu2807 -1.2 -6.2 cob(I)alamin adenosyltransferase compare
Atu3483 -1.1 -3.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2801 -1.1 -4.2 precorrin-2 C20 methyltransferase compare
Atu1572 -1.1 -5.3 hydrolase compare
Atu2809 -1.1 -5.5 cobalamin biosynthesis protein compare
Atu2802 -1.1 -4.4 precorrin-8X methylmutase compare
Atu1028 -1.1 -1.6 hypothetical protein compare
Atu0331 -1.1 -2.7 sigma-54 modulation protein compare
Atu2270 -1.1 -1.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu2207 -1.1 -2.3 two component sensor kinase compare
Atu2800 -1.0 -2.2 precorrin-3B C17-methyltransferase compare
Atu3482 -1.0 -4.5 pantoate--beta-alanine ligase compare
Atu1470 -1.0 -1.4 Camphor resistance protein compare
Atu6106 -1.0 -2.4 conserved hypothetical protein compare
Atu3908 -1.0 -6.4 GntR family transcriptional regulator compare
Atu1546 -1.0 -3.6 transcriptional regulator, MerR family compare
Atu0536 -1.0 -4.8 hypothetical protein compare
Atu0401 -1.0 -5.4 fructokinase compare
Atu2209 -1.0 -4.1 pyrroline-5-carboxylate reductase compare
Atu0981 -1.0 -6.0 glutamate-ammonia-ligase adenylyltransferase compare
Atu0770 -1.0 -4.0 cytochrome C oxidase assembly protein compare
Atu0837 -1.0 -5.4 transcriptional regulator, MarR family compare
Atu2684 -1.0 -1.0 hypothetical protein compare
Atu1242 -1.0 -5.1 cytochrome oxidase assembly factor compare
Atu1163 -1.0 -1.8 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2818 -0.9 -5.2 ABC transporter, membrane spanning protein (ribose) compare
Atu0405 -0.9 -7.1 long-chain-fatty-acid-CoA-ligase compare
Atu2267 -0.9 -3.7 hypothetical protein compare
Atu1770 -0.9 -6.0 glutamine synthetase compare
Atu0803 -0.9 -6.6 pyruvate,orthophosphate dikinase compare
Atu3485 -0.9 -5.6 short chain dehydrogenase compare
Atu3337 -0.9 -5.4 LacI family transcriptional regulator compare
Atu2804 -0.9 -5.2 cobaltochelatase subunit compare
Atu2819 -0.9 -6.6 ABC transporter, nucleotide binding/ATPase protein (ribose) compare
Atu1464 -0.9 -5.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu0291 -0.9 -5.2 hypothetical protein compare
Atu2124 -0.8 -4.0 transcriptional regulator, ArsR family compare
Atu4173 -0.8 -2.2 phosphoenolpyruvate-protein phosphotransferase compare
Atu0883 -0.8 -1.4 hypothetical protein compare
Atu0190 -0.8 -3.6 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3345 -0.8 -3.0 6-pyruvoyl tetrahydrobiopterin synthase compare
Atu2555 -0.8 -2.3 L-lysine 2,3-aminomutase compare
Atu2578 -0.8 -2.2 cAMP-dependent protein kinase regulatory subunit compare
Atu2803 -0.8 -2.7 Cobalamin biosynthesis associated protein compare
Atu0361 -0.8 -2.1 transcriptional regulator compare
Atu4446 -0.8 -3.7 hypothetical protein compare
Atu5043 -0.8 -2.2 hypothetical protein compare
Atu0188 -0.8 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu1462 -0.8 -4.6 glycine cleavage system protein P2 compare
Atu3871 -0.7 -4.6 L-lactate dehydrogenase compare
Atu2770 -0.7 -2.5 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu1818 -0.7 -2.0 hypothetical protein compare
Atu1372 -0.7 -2.5 hypothetical protein compare
Atu0771 -0.7 -4.4 cytochrome c oxidase subunit III compare
Atu0142 -0.7 -1.3 cytochrome o ubiquinol oxidase subunit II compare
Atu1225 -0.7 -0.9 hypothetical protein compare
Atu3336 -0.7 -2.2 hypothetical protein compare
Atu0590 -0.7 -4.1 transcriptional regulator repressor compare
Atu0768 -0.7 -4.8 cytochrome-c oxidase chain I compare
Atu2428 -0.7 -4.0 exopolysaccharide production protein PssB compare
Atu4743 -0.7 -3.6 LacI family transcriptional regulator compare
Atu1463 -0.7 -3.7 glycine cleavage system component H compare
Atu1699 -0.7 -2.5 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu0501 -0.7 -5.3 acyl-CoA dehydrogenase compare
Atu4346 -0.7 -2.6 hypothetical protein compare
Atu1774 -0.7 -4.1 ABC transporter, substrate binding protein (peptide) compare
Atu8099 -0.7 -1.7 hypothetical protein compare
Atu2817 -0.7 -4.7 ABC transporter, substrate binding protein (ribose) compare
Atu2657 -0.7 -1.3 hypothetical protein compare
Atu0354 -0.7 -1.3 ferric uptake regulator compare
Atu0141 -0.7 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu4161 -0.7 -1.7 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source L-Fucose in Agrobacterium fabrum C58

For carbon source L-Fucose across organisms