Experiment set2IT022 for Pseudomonas sp. RS175

Compare to:

Malonic acid carbon source 10 mM

200 most detrimental genes:

  gene name fitness t score description  
PFR28_04233 +2.3 10.6 hypothetical protein compare
PFR28_03079 +2.2 18.2 Sensor histidine kinase RcsC compare
PFR28_01410 +2.1 15.9 Response regulator GacA compare
PFR28_03077 +2.1 19.1 Vitamin B12 transporter BtuB compare
PFR28_03227 +2.0 12.9 Signal transduction histidine-protein kinase BarA compare
PFR28_05075 +1.9 16.4 hypothetical protein compare
PFR28_04936 +1.6 6.1 Carboxy-terminal processing protease CtpB compare
PFR28_03657 +1.3 8.6 Beta-barrel assembly-enhancing protease compare
PFR28_04449 +1.3 4.8 hypothetical protein compare
PFR28_00828 +1.3 11.3 Anaerobic nitric oxide reductase transcription regulator NorR compare
PFR28_00427 +1.2 11.0 RNA polymerase sigma factor RpoS compare
PFR28_00990 +1.2 2.3 Free methionine-R-sulfoxide reductase compare
PFR28_03106 +1.2 7.4 hypothetical protein compare
PFR28_00405 +1.1 2.3 hypothetical protein compare
PFR28_04176 +1.1 6.0 Protein ElaA compare
PFR28_03350 +1.1 5.5 hypothetical protein compare
PFR28_04598 +1.1 6.7 hypothetical protein compare
PFR28_05067 +1.1 3.1 hypothetical protein compare
PFR28_04380 +1.1 2.5 Transcriptional regulator SutA compare
PFR28_00498 +1.1 3.1 Cold shock protein CapB compare
PFR28_03724 +1.0 6.2 Glucose-6-phosphate isomerase compare
PFR28_01270 +1.0 4.7 hypothetical protein compare
PFR28_01119 +1.0 5.0 Beta-hexosaminidase compare
PFR28_04900 +1.0 8.6 hypothetical protein compare
PFR28_00452 +1.0 1.6 hypothetical protein compare
PFR28_03951 +1.0 1.7 hypothetical protein compare
PFR28_00966 +1.0 6.4 HTH-type transcriptional regulator CysB compare
PFR28_01015 +1.0 2.7 '3'-5' exonuclease DinG' transl_table=11 compare
PFR28_04979 +1.0 7.0 Glucans biosynthesis glucosyltransferase H compare
PFR28_04904 +0.9 7.0 HTH-type transcriptional regulator HdfR compare
PFR28_03549 +0.9 2.4 Molybdopterin synthase catalytic subunit compare
PFR28_00527 +0.9 6.5 N-(2-amino-2-carboxyethyl)-L-glutamate synthase compare
PFR28_05068 +0.9 3.2 hypothetical protein compare
PFR28_00100 +0.9 5.7 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFR28_04830 +0.9 6.8 Phosphoenolpyruvate-dependent phosphotransferase system compare
PFR28_00180 +0.9 4.0 Intermembrane phospholipid transport system permease protein MlaE compare
PFR28_00169 +0.9 4.3 Phosphocarrier protein NPr compare
PFR28_02809 +0.9 2.2 Glucose 1-dehydrogenase 1 compare
PFR28_01450 +0.9 1.8 hypothetical protein compare
PFR28_04638 +0.8 5.7 Proton/glutamate-aspartate symporter compare
PFR28_02830 +0.8 2.7 Putative aminoacrylate hydrolase RutD compare
PFR28_03386 +0.8 2.4 Major cold shock protein CspA compare
PFR28_00993 +0.8 2.6 Virulence factors putative positive transcription regulator BvgA compare
PFR28_00823 +0.8 5.9 Flagellin compare
PFR28_00535 +0.8 2.1 hypothetical protein compare
PFR28_01042 +0.8 1.3 hypothetical protein compare
PFR28_03533 +0.8 0.9 DNA-binding protein HU 1 compare
PFR28_03105 +0.8 6.4 hypothetical protein compare
PFR28_01601 +0.8 3.7 hypothetical protein compare
PFR28_02931 +0.8 4.4 hypothetical protein compare
PFR28_05074 +0.8 5.8 hypothetical protein compare
PFR28_03680 +0.8 2.1 hypothetical protein compare
PFR28_04060 +0.8 6.2 N-acetylmuramate/N-acetylglucosamine kinase compare
PFR28_02930 +0.8 3.7 hypothetical protein compare
PFR28_00181 +0.8 4.7 Intermembrane phospholipid transport system binding protein MlaD compare
PFR28_03178 +0.7 2.1 tRNA-Asp compare
PFR28_03688 +0.7 5.5 hypothetical protein compare
PFR28_03352 +0.7 5.0 hypothetical protein compare
PFR28_04489 +0.7 5.0 Phosphate-binding protein PstS compare
PFR28_02800 +0.7 1.0 hypothetical protein compare
PFR28_00451 +0.7 2.3 hypothetical protein compare
PFR28_01279 +0.7 5.4 hypothetical protein compare
PFR28_00690 +0.7 3.1 RNA polymerase sigma-H factor compare
PFR28_00930 +0.7 4.3 GDP-perosamine synthase compare
PFR28_00848 +0.7 5.0 Flagellar biosynthetic protein FlhB compare
PFR28_04978 +0.7 4.0 Glucans biosynthesis protein G compare
PFR28_00836 +0.7 5.0 Flagellar FliJ protein compare
PFR28_03687 +0.7 5.1 Intermembrane transport protein PqiA compare
PFR28_00182 +0.7 3.8 Intermembrane phospholipid transport system binding protein MlaC compare
PFR28_05070 +0.7 1.3 nebramycin 5 compare
PFR28_04497 +0.7 4.4 HTH-type transcriptional regulator YjiE compare
PFR28_03696 +0.7 4.8 hypothetical protein compare
PFR28_04059 +0.7 5.6 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_03784 +0.7 4.7 Energy-dependent translational throttle protein EttA compare
PFR28_01888 +0.7 1.9 hypothetical protein compare
PFR28_05110 +0.7 4.8 Motility protein A compare
PFR28_00917 +0.7 5.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
PFR28_01251 +0.7 1.2 ECF RNA polymerase sigma factor EcfG compare
PFR28_03254 +0.7 4.7 Flagellar basal body rod protein FlgB compare
PFR28_01014 +0.7 1.5 Pyrimidine/purine nucleoside phosphorylase compare
PFR28_03749 +0.7 2.1 Outer membrane protein assembly factor BamD compare
PFR28_04115 +0.6 2.1 Protein FecR compare
PFR28_05111 +0.6 3.7 Motility protein B compare
PFR28_00847 +0.6 3.5 Flagellar biosynthetic protein FliR compare
PFR28_00764 +0.6 2.0 hypothetical protein compare
PFR28_04434 +0.6 4.5 Hydrogen peroxide-inducible genes activator compare
PFR28_02785 +0.6 1.8 hypothetical protein compare
PFR28_02324 +0.6 1.5 hypothetical protein compare
PFR28_01150 +0.6 1.7 hypothetical protein compare
PFR28_03252 +0.6 4.4 Basal-body rod modification protein FlgD compare
PFR28_02932 +0.6 3.6 hypothetical protein compare
PFR28_00862 +0.6 3.0 hypothetical protein compare
PFR28_03511 +0.6 1.2 HTH-type transcriptional repressor NagR compare
PFR28_02369 +0.6 2.4 hypothetical protein compare
PFR28_00835 +0.6 5.1 Flagellum-specific ATP synthase compare
PFR28_00342 +0.6 1.8 hypothetical protein compare
PFR28_01139 +0.6 4.4 Intermembrane phospholipid transport system lipoprotein MlaA compare
PFR28_00968 +0.6 1.2 hypothetical protein compare
PFR28_03686 +0.6 4.9 Intermembrane transport protein YebT compare
PFR28_03651 +0.6 4.3 Lipid A deacylase PagL compare
PFR28_04853 +0.6 1.7 L-cystine import ATP-binding protein TcyC compare
PFR28_01358 +0.6 1.4 hypothetical protein compare
PFR28_00299 +0.6 0.9 hypothetical protein compare
PFR28_01415 +0.6 1.2 hypothetical protein compare
PFR28_04556 +0.6 3.6 hypothetical protein compare
PFR28_03253 +0.6 4.1 Flagellar basal-body rod protein FlgC compare
PFR28_00915 +0.6 3.7 Chain length determinant protein compare
PFR28_00495 +0.6 4.8 hypothetical protein compare
PFR28_01420 +0.6 2.3 hypothetical protein compare
PFR28_02562 +0.6 1.7 hypothetical protein compare
PFR28_01884 +0.5 2.6 putative enoyl-CoA hydratase echA8 compare
PFR28_00026 +0.5 3.1 HTH-type transcriptional regulator DmlR compare
PFR28_01009 +0.5 3.0 Transcriptional regulatory protein DegU compare
PFR28_00832 +0.5 4.4 Flagellar M-ring protein compare
PFR28_00842 +0.5 3.9 Flagellar motor switch protein FliM compare
PFR28_04511 +0.5 2.0 hypothetical protein compare
PFR28_05242 +0.5 4.1 hypothetical protein compare
PFR28_00916 +0.5 4.4 UDP-N-acetylglucosamine 2-epimerase compare
PFR28_01294 +0.5 1.7 hypothetical protein compare
PFR28_02872 +0.5 0.8 hypothetical protein compare
PFR28_01969 +0.5 1.7 hypothetical protein compare
PFR28_03219 +0.5 4.2 hypothetical protein compare
PFR28_00980 +0.5 1.1 ATP-dependent RNA helicase DeaD compare
PFR28_02666 +0.5 1.8 hypothetical protein compare
PFR28_03078 +0.5 2.8 hypothetical protein compare
PFR28_00989 +0.5 3.0 hypothetical protein compare
PFR28_00677 +0.5 3.5 Uracil-DNA glycosylase compare
PFR28_01646 +0.5 1.5 hypothetical protein compare
PFR28_00849 +0.5 4.4 Flagellar biosynthesis protein FlhA compare
PFR28_01979 +0.5 1.5 hypothetical protein compare
PFR28_05124 +0.5 2.1 Modulator of FtsH protease HflC compare
PFR28_01177 +0.5 2.1 hypothetical protein compare
PFR28_03928 +0.5 2.6 hypothetical protein compare
PFR28_04209 +0.5 2.8 Ribosomal RNA small subunit methyltransferase E compare
PFR28_00179 +0.5 2.4 Intermembrane phospholipid transport system ATP-binding protein MlaF compare
PFR28_04426 +0.5 2.4 hypothetical protein compare
PFR28_00834 +0.5 4.2 hypothetical protein compare
PFR28_04460 +0.5 2.1 hypothetical protein compare
PFR28_01110 +0.5 1.7 Fatty acid oxidation complex subunit alpha compare
PFR28_01347 +0.5 1.7 hypothetical protein compare
PFR28_03919 +0.5 0.8 hypothetical protein compare
PFR28_03020 +0.5 1.7 hypothetical protein compare
PFR28_00820 +0.5 2.9 3-oxoacyl-[acyl-carrier-protein] synthase 3 compare
PFR28_00845 +0.5 2.1 Flagellar biosynthetic protein FliP compare
PFR28_05000 +0.5 1.4 Cell division protein FtsN compare
PFR28_02111 +0.5 2.2 hypothetical protein compare
PFR28_02847 +0.5 2.2 Transcriptional regulatory protein QseB compare
PFR28_02740 +0.5 1.1 hypothetical protein compare
PFR28_01879 +0.5 0.9 hypothetical protein compare
PFR28_00833 +0.5 2.9 Flagellar motor switch protein FliG compare
PFR28_04096 +0.5 4.0 3-methylmercaptopropionyl-CoA dehydrogenase compare
PFR28_04712 +0.5 1.0 Dodecin compare
PFR28_02252 +0.5 3.3 hypothetical protein compare
PFR28_03251 +0.5 4.1 Flagellar hook protein FlgE compare
PFR28_00700 +0.5 2.4 Outer membrane protein assembly factor BamC compare
PFR28_03636 +0.5 1.9 hypothetical protein compare
PFR28_01189 +0.5 2.5 hypothetical protein compare
PFR28_01220 +0.5 2.6 hypothetical protein compare
PFR28_02678 +0.5 1.4 hypothetical protein compare
PFR28_01219 +0.5 1.5 hypothetical protein compare
PFR28_01600 +0.5 1.1 HTH-type transcriptional regulator KdgR compare
PFR28_02771 +0.5 1.5 Putative tyrosine-protein kinase YveL compare
PFR28_00805 +0.5 2.8 Flagellar basal-body rod protein FlgG compare
PFR28_00559 +0.5 2.2 ECF RNA polymerase sigma factor SigE compare
PFR28_02827 +0.5 1.9 Small heat shock protein IbpA compare
PFR28_01078 +0.4 1.4 Adenine phosphoribosyltransferase compare
PFR28_03052 +0.4 1.5 hypothetical protein compare
PFR28_00846 +0.4 3.2 Flagellar biosynthetic protein FliQ compare
PFR28_01592 +0.4 1.7 hypothetical protein compare
PFR28_01021 +0.4 3.9 hypothetical protein compare
PFR28_00809 +0.4 3.6 hypothetical protein compare
PFR28_00442 +0.4 1.2 hypothetical protein compare
PFR28_02960 +0.4 3.2 hypothetical protein compare
PFR28_02249 +0.4 3.2 hypothetical protein compare
PFR28_05036 +0.4 0.6 Acyl carrier protein compare
PFR28_01370 +0.4 4.2 hypothetical protein compare
PFR28_00532 +0.4 1.1 hypothetical protein compare
PFR28_01650 +0.4 2.4 hypothetical protein compare
PFR28_05144 +0.4 1.0 hypothetical protein compare
PFR28_00228 +0.4 1.4 hypothetical protein compare
PFR28_02048 +0.4 1.6 hypothetical protein compare
PFR28_01583 +0.4 0.7 hypothetical protein compare
PFR28_02389 +0.4 2.4 hypothetical protein compare
PFR28_01524 +0.4 1.8 hypothetical protein compare
PFR28_03121 +0.4 1.5 hypothetical protein compare
PFR28_03507 +0.4 1.5 Protein YrdA compare
PFR28_01843 +0.4 1.7 hypothetical protein compare
PFR28_05023 +0.4 0.9 hypothetical protein compare
PFR28_01179 +0.4 1.8 hypothetical protein compare
PFR28_00927 +0.4 3.2 D-inositol-3-phosphate glycosyltransferase compare
PFR28_00725 +0.4 1.9 Putative glutamine amidotransferase YafJ compare
PFR28_03830 +0.4 2.2 hypothetical protein compare
PFR28_02303 +0.4 1.6 hypothetical protein compare
PFR28_00806 +0.4 2.8 Flagellar L-ring protein compare
PFR28_04825 +0.4 2.0 Mercuric resistance operon regulatory protein compare
PFR28_00808 +0.4 2.7 hypothetical protein compare
PFR28_02357 +0.4 1.7 Bicyclomycin resistance protein compare
PFR28_05223 +0.4 1.2 Methyl-accepting chemotaxis protein CtpL compare
PFR28_04635 +0.4 0.9 hypothetical protein compare
PFR28_05022 +0.4 1.9 3-oxoacyl-[acyl-carrier-protein] reductase FabG compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Malonic acid in Pseudomonas sp. RS175

For carbon source Malonic acid across organisms