Experiment set2IT021 for Agrobacterium fabrum C58

Compare to:

Ribitol carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -8.7 -6.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu1687 -7.7 -7.5 anthranilate phosphoribosyltransferase compare
Atu0099 -7.7 -5.3 prephenate dehydratase compare
Atu0432 -7.4 -7.2 O-succinylhomoserine sulfhydrylase compare
Atu2289 -7.3 -12.1 anthranilate synthase component I and II compare
Atu2709 -7.3 -11.1 3-isopropylmalate dehydratase, large subunit compare
Atu2036 -7.2 -7.1 acetolactate synthase III, large subunit compare
Atu2791 -7.1 -6.9 3-isopropylmalate dehydrogenase compare
Atu1588 -7.0 -6.9 homoserine dehydrogenase compare
Atu0298 -7.0 -4.8 orotidine 5 compare
Atu0400 -6.9 -4.8 orotate phosphoribosyltransferase compare
Atu2650 -6.9 -10.6 glycerol-3-phosphate dehydrogenase compare
Atu0679 -6.8 -4.7 ATP phosphoribosyltransferase compare
Atu3783 -6.8 -15.8 glutamate synthase subunit beta compare
Atu1844 -6.7 -4.6 Phosphoribosylformylglycinamidine synthetase compare
Atu2726 -6.7 -20.2 pyruvate carboxylase compare
Atu1205 -6.6 -11.9 threonine dehydratase compare
Atu2264 -6.6 -11.8 2-isopropylmalate synthase compare
Atu0038 -6.5 -6.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3784 -6.5 -25.0 glutamate synthase large subunit compare
Atu1140 -6.4 -6.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3482 -6.3 -10.6 pantoate--beta-alanine ligase compare
Atu1308 -6.3 -7.5 aspartate carbamoyl transferase catalytic subunit compare
Atu1141 -6.3 -7.5 Phosphoribosylglycinamide synthetase compare
Atu2040 -6.2 -4.3 phosphoserine phosphatase compare
Atu1850 -6.2 -6.0 phosphoribosylformylglycinamidine synthetase II compare
Atu3706 -6.1 -8.3 D-3-phosphoglycerate dehydrogenase compare
Atu3707 -6.0 -4.1 phosphoserine aminotransferase compare
Atu0678 -6.0 -4.1 histidyl-tRNA synthetase compare
Atu4324 -6.0 -16.7 ribitol kinase compare
Atu0537 -5.9 -5.8 histidinol dehydrogenase compare
Atu3885 -5.9 -9.0 inositol monophosphatase compare
Atu1075 -5.9 -8.0 amidophosphoribosyltransferase compare
Atu0017 -5.8 -4.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2718 -5.8 -9.6 homoserine O-succinyltransferase compare
Atu0486 -5.6 -6.7 dihydroorotate dehydrogenase compare
Atu0399 -5.6 -5.4 dihydroorotase compare
Atu0647 -5.4 -5.3 phosphoribosylamine--glycine ligase compare
Atu3483 -5.4 -6.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3739 -5.4 -3.0 phosphoglycerate kinase compare
Atu3755 -5.3 -6.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4323 -5.3 -8.9 ribitol 2-dehydrogenase compare
Atu1688 -5.3 -5.2 indole-3-glycerol-phosphate synthase compare
Atu2790 -5.1 -3.1 3-isopropylmalate dehydratase, small subunit compare
Atu2015 -5.0 -15.5 aminotransferase compare
Atu3754 -5.0 -5.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0043 -5.0 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu1589 -5.0 -10.1 aminotransferase, class I compare
Atu1686 -4.8 -18.8 peptidyl-prolyl cis-trans isomerse D compare
Atu0041 -4.8 -3.3 glutamine amidotransferase compare
Atu0039 -4.8 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -4.7 -3.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1307 -4.7 -9.5 dihydroorotase compare
Atu3731 -4.7 -8.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu2548 -4.4 -18.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0641 -4.3 -5.3 hypothetical protein compare
Atu0030 -4.3 -2.7 phosphocarrier protein HPr compare
Atu0792 -4.2 -9.3 hypothetical protein compare
Atu1845 -4.1 -3.8 phosphoribosylformylglycinamidine synthase I compare
Atu1456 -3.9 -13.1 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu4098 -3.9 -15.0 quinolinate synthetase compare
Atu2747 -3.8 -14.7 hypothetical protein compare
Atu4096 -3.7 -8.8 nicotinate-nucleotide pyrophosphorylase compare
Atu3999 -3.7 -3.0 dithiobiotin synthetase compare
Atu0598 -3.6 -11.1 phosphogluconate dehydratase compare
Atu1446 -3.5 -4.2 two component response regulator compare
Atu2155 -3.5 -20.4 methionine synthase compare
Atu4097 -3.4 -11.4 L-aspartate oxidase compare
Atu1620 -3.3 -13.0 triosephosphate isomerase compare
Atu0769 -3.2 -3.5 protoheme IX farnesyltransferase compare
Atu1455 -3.1 -4.5 hypothetical protein compare
Atu1454 -3.1 -12.8 siroheme synthase compare
Atu6098 -3.1 -1.3 transcriptional regulator, HTH family compare
Atu3997 -3.0 -17.0 biotin synthetase compare
Atu2127 -3.0 -11.3 L-carnitine dehydratase compare
Atu3998 -2.9 -14.2 8-amino-7-oxononanoate synthase compare
Atu3469 -2.9 -3.9 phosphoglyceromutase compare
Atu1748 -2.9 -11.1 NIFU-like protein compare
Atu0040 -2.8 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4001 -2.8 -8.6 3-oxoacyl-ACP synthase compare
Atu4000 -2.7 -13.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu2205 -2.6 -5.6 transcriptional regulator, MarR family compare
Atu3288 -2.6 -10.0 hydroxyethylthiazole kinase compare
Atu2209 -2.4 -5.8 pyrroline-5-carboxylate reductase compare
Atu0029 -2.4 -6.1 S-adenosylhomocysteine hydrolase compare
Atu4321 -2.4 -11.0 ribose ABC transporter ATPase compare
Atu4322 -2.3 -10.4 ribose ABC transporter permease compare
Atu8054 -2.3 -1.0 hypothetical protein compare
Atu3290 -2.3 -8.7 phosphomethylpyrimidine kinase compare
Atu6165 -2.3 -1.3 hypothetical protein compare
Atu0501 -2.2 -15.2 acyl-CoA dehydrogenase compare
Atu1462 -2.2 -11.6 glycine cleavage system protein P2 compare
Atu2569 -2.2 -13.3 thiamine biosynthesis protein compare
Atu1359 -2.1 -1.8 dnaK deletion suppressor protein compare
Atu0031 -2.1 -2.2 PTS system, IIA component compare
Atu3289 -2.1 -3.8 thiamine-phosphate pyrophosphorylase compare
Atu4319 -2.1 -7.5 AraC family transcriptional regulator compare
Atu0434 -2.1 -2.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0876 -2.0 -2.4 superoxide dismutase compare
Atu1464 -1.9 -6.2 glycine cleavage system T protein, aminomethyltransferase compare
Atu0503 -1.9 -12.7 enoyl-CoA hydratase compare
Atu0601 -1.9 -11.3 oxidoreductase compare
Atu1463 -1.9 -8.8 glycine cleavage system component H compare
Atu3712 -1.9 -2.5 hypothetical protein compare
Atu2125 -1.8 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu8115 -1.8 -3.6 Hypothetical Protein compare
Atu2800 -1.8 -2.1 precorrin-3B C17-methyltransferase compare
Atu4320 -1.8 -7.3 ribose ABC transporter substrate-binding protein compare
Atu3730 -1.8 -2.1 hypothetical protein compare
Atu6114 -1.8 -2.9 hypothetical protein compare
Atu0502 -1.7 -5.9 acetyl-CoA acetyltransferase compare
Atu1685 -1.7 -1.6 hypothetical protein compare
Atu1604 -1.7 -12.7 poly-beta-hydroxybutyrate synthase compare
Atu1572 -1.7 -6.1 hydrolase compare
Atu1891 -1.6 -3.1 cobalamin biosynthesis protein compare
Atu2807 -1.6 -4.9 cob(I)alamin adenosyltransferase compare
Atu0405 -1.5 -11.9 long-chain-fatty-acid-CoA-ligase compare
Atu4317 -1.5 -4.8 TetR family transcriptional regulator compare
Atu0141 -1.5 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu0346 -1.5 -2.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0422 -1.5 -1.5 ABC transporter, membrane spanning protein compare
Atu2770 -1.5 -6.9 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu0925 -1.4 -1.7 hypothetical protein compare
Atu2200 -1.4 -2.6 cold shock protein compare
Atu1457 -1.4 -2.5 hypothetical protein compare
Atu3468 -1.4 -1.3 hypothetical protein compare
Atu0723 -1.4 -2.0 FAD dependent oxidoreductase compare
Atu0421 -1.3 -1.9 ABC transporter, membrane spanning protein compare
Atu2793 -1.3 -4.6 cobyrinic acid a,c-diamide synthase compare
Atu2802 -1.3 -7.1 precorrin-8X methylmutase compare
Atu2808 -1.3 -5.2 cobyric acid synthase compare
Atu0837 -1.3 -4.6 transcriptional regulator, MarR family compare
Atu2804 -1.2 -8.0 cobaltochelatase subunit compare
Atu5468 -1.2 -1.9 hypothetical protein compare
Atu4711 -1.2 -4.4 two component sensor kinase compare
Atu5142 -1.2 -1.4 hypothetical protein compare
Atu0291 -1.2 -6.9 hypothetical protein compare
Atu1542 -1.2 -4.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2809 -1.1 -5.2 cobalamin biosynthesis protein compare
Atu1339 -1.1 -2.6 ribonuclease E compare
Atu4173 -1.1 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
Atu0190 -1.1 -5.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4072 -1.1 -1.6 nodulation protein N compare
Atu0188 -1.1 -2.7 ABC transporter, membrane spanning protein (peptide) compare
Atu2123 -1.1 -4.1 methylenetetrahydrofolate reductase compare
Atu1372 -1.1 -3.8 hypothetical protein compare
Atu0332 -1.1 -6.4 RNA polymerase sigma-54 factor compare
Atu2020 -1.1 -3.6 transcriptional regulator, TetR family compare
Atu2796 -1.0 -3.9 precorrin-4 C11-methyltransferase compare
Atu2797 -1.0 -2.2 cobalamin biosynthesis protein compare
Atu2554 -1.0 -1.3 lysyl-tRNA synthetase compare
Atu0361 -1.0 -2.7 transcriptional regulator compare
Atu2249 -1.0 -1.2 hypothetical protein compare
Atu4677 -1.0 -1.4 hypothetical protein compare
Atu2803 -1.0 -3.7 Cobalamin biosynthesis associated protein compare
Atu2805 -1.0 -3.6 cobalamin synthesis protein compare
Atu1774 -1.0 -5.4 ABC transporter, substrate binding protein (peptide) compare
Atu2795 -1.0 -4.6 cobalamin biosynthetic protein compare
Atu0602 -1.0 -4.8 glutamine synthetase compare
Atu5540 -1.0 -0.8 hypothetical protein compare
Atu2801 -0.9 -2.6 precorrin-2 C20 methyltransferase compare
Atu2115 -0.9 -4.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1810 -0.9 -1.2 hypothetical protein compare
Atu0590 -0.9 -4.7 transcriptional regulator repressor compare
Atu2267 -0.9 -3.7 hypothetical protein compare
Atu3518 -0.9 -5.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu2124 -0.9 -3.4 transcriptional regulator, ArsR family compare
Atu2335 -0.9 -2.1 hypothetical protein compare
Atu4075 -0.9 -4.0 glycogen synthase compare
Atu0544 -0.8 -1.3 hypothetical protein compare
Atu2799 -0.8 -2.8 precorrin-6x reductase compare
Atu1503 -0.8 -1.0 hypothetical protein compare
Atu0106 -0.8 -2.3 cold shock protein compare
Atu4144 -0.8 -1.0 hypothetical protein compare
Atu1232 -0.8 -2.0 hypothetical protein compare
Atu2555 -0.8 -3.1 L-lysine 2,3-aminomutase compare
Atu0107 -0.8 -2.3 hypothetical protein compare
Atu1364 -0.8 -3.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu5152 -0.8 -2.1 hypothetical protein compare
Atu3908 -0.8 -5.3 GntR family transcriptional regulator compare
Atu0966 -0.7 -0.8 hypothetical protein compare
Atu1470 -0.7 -0.5 Camphor resistance protein compare
Atu2376 -0.7 -0.6 hypothetical protein compare
Atu0659 -0.7 -2.7 NTP pyrophosphohydrolase, MutT family compare
Atu2352 -0.7 -1.8 hypothetical protein compare
Atu3740 -0.7 -4.5 fructose bisphosphate aldolase compare
Atu3732 -0.7 -4.2 hemolysin compare
Atu3598 -0.7 -1.3 thiol:disulfide interchange protein compare
Atu0354 -0.7 -1.5 ferric uptake regulator compare
Atu3287 -0.7 -2.1 thiamine biosynthesis associated protein compare
Atu0972 -0.7 -2.3 lipA protein compare
Atu1445 -0.7 -2.3 two component sensor kinase compare
Atu2798 -0.7 -2.4 precorrin-6y methyltransferase compare
Atu0846 -0.7 -2.8 transcriptional regulator, MarR family compare
Atu1285 -0.7 -4.1 metal dependent hydrolase compare
Atu3886 -0.6 -3.1 lysophospholipase compare
Atu2442 -0.6 -1.3 hypothetical protein compare
Atu3733 -0.6 -1.0 hypothetical protein compare
Atu0703 -0.6 -1.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0981 -0.6 -4.4 glutamate-ammonia-ligase adenylyltransferase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Ribitol in Agrobacterium fabrum C58

For carbon source Ribitol across organisms