Experiment set2IT021 for Agrobacterium fabrum C58
Ribitol carbon source
Group: carbon sourceMedia: MOPS minimal media_noCarbon + Ribitol (10 mM)
Culturing: Agro_ML11, 24-well transparent microplate; Multitron, Aerobic, at 28 (C), shaken=200 rpm
By: Mitchell Thompson on 10/20/20
Media components: 40 mM 3-(N-morpholino)propanesulfonic acid, 4 mM Tricine, 1.32 mM Potassium phosphate dibasic, 0.01 mM Iron (II) sulfate heptahydrate, 9.5 mM Ammonium chloride, 0.276 mM Aluminum potassium sulfate dodecahydrate, 0.0005 mM Calcium chloride, 0.525 mM Magnesium chloride hexahydrate, 50 mM Sodium Chloride, 3e-09 M Ammonium heptamolybdate tetrahydrate, 4e-07 M Boric Acid, 3e-08 M Cobalt chloride hexahydrate, 1e-08 M Copper (II) sulfate pentahydrate, 8e-08 M Manganese (II) chloride tetrahydrate, 1e-08 M Zinc sulfate heptahydrate
Specific Phenotypes
For 7 genes in this experiment
For carbon source Ribitol in Agrobacterium fabrum C58
For carbon source Ribitol across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| D-ribose utilization | 3 |
| Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization | 3 |
| Biotin biosynthesis | 1 |
| n-Phenylalkanoic acid degradation | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Pentose and glucuronate interconversions
- Pentose phosphate pathway
- Fatty acid metabolism
- Lipopolysaccharide biosynthesis
- Nicotinate and nicotinamide metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes: