Experiment set2IT020 for Agrobacterium fabrum C58

Compare to:

Ribitol carbon source

200 most important genes:

  gene name fitness t score description  
Atu1750 -8.9 -6.2 phosphoribosyl c-AMP cyclohydrolase compare
Atu1850 -7.9 -5.4 phosphoribosylformylglycinamidine synthetase II compare
Atu3754 -7.4 -5.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1140 -7.2 -7.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2264 -7.2 -8.5 2-isopropylmalate synthase compare
Atu0298 -7.1 -4.9 orotidine 5 compare
Atu1205 -7.1 -9.7 threonine dehydratase compare
Atu0679 -7.0 -4.8 ATP phosphoribosyltransferase compare
Atu2289 -6.9 -14.8 anthranilate synthase component I and II compare
Atu2709 -6.8 -17.1 3-isopropylmalate dehydratase, large subunit compare
Atu2036 -6.8 -13.0 acetolactate synthase III, large subunit compare
Atu1687 -6.8 -12.2 anthranilate phosphoribosyltransferase compare
Atu3482 -6.8 -9.3 pantoate--beta-alanine ligase compare
Atu3706 -6.7 -6.6 D-3-phosphoglycerate dehydrogenase compare
Atu3784 -6.6 -26.3 glutamate synthase large subunit compare
Atu2726 -6.6 -20.7 pyruvate carboxylase compare
Atu3783 -6.6 -17.5 glutamate synthase subunit beta compare
Atu2791 -6.6 -7.8 3-isopropylmalate dehydrogenase compare
Atu1308 -6.5 -7.7 aspartate carbamoyl transferase catalytic subunit compare
Atu1141 -6.4 -8.8 Phosphoribosylglycinamide synthetase compare
Atu2040 -6.4 -4.4 phosphoserine phosphatase compare
Atu1307 -6.4 -7.4 dihydroorotase compare
Atu0537 -6.3 -4.4 histidinol dehydrogenase compare
Atu2650 -6.3 -14.0 glycerol-3-phosphate dehydrogenase compare
Atu1588 -6.2 -8.6 homoserine dehydrogenase compare
Atu1688 -6.2 -4.3 indole-3-glycerol-phosphate synthase compare
Atu3707 -6.2 -4.3 phosphoserine aminotransferase compare
Atu0678 -6.1 -4.2 histidyl-tRNA synthetase compare
Atu0099 -6.0 -12.2 prephenate dehydratase compare
Atu0030 -6.0 -2.5 phosphocarrier protein HPr compare
Atu0017 -6.0 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0400 -6.0 -7.1 orotate phosphoribosyltransferase compare
Atu2718 -5.9 -8.1 homoserine O-succinyltransferase compare
Atu0399 -5.8 -7.9 dihydroorotase compare
Atu1075 -5.7 -9.4 amidophosphoribosyltransferase compare
Atu0647 -5.7 -5.5 phosphoribosylamine--glycine ligase compare
Atu4324 -5.6 -16.2 ribitol kinase compare
Atu0486 -5.5 -7.4 dihydroorotate dehydrogenase compare
Atu1845 -5.5 -5.7 phosphoribosylformylglycinamidine synthase I compare
Atu2015 -5.5 -16.5 aminotransferase compare
Atu0432 -5.4 -10.4 O-succinylhomoserine sulfhydrylase compare
Atu0038 -5.4 -6.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1844 -5.4 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu3885 -5.4 -9.5 inositol monophosphatase compare
Atu3755 -5.3 -6.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0043 -5.2 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu0041 -5.0 -3.4 glutamine amidotransferase compare
Atu0039 -4.9 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu3483 -4.9 -9.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1030 -4.8 -3.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4323 -4.7 -9.6 ribitol 2-dehydrogenase compare
Atu1686 -4.4 -17.6 peptidyl-prolyl cis-trans isomerse D compare
Atu2790 -4.4 -3.6 3-isopropylmalate dehydratase, small subunit compare
Atu0792 -4.4 -9.1 hypothetical protein compare
Atu2548 -4.3 -16.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3739 -4.0 -4.6 phosphoglycerate kinase compare
Atu0598 -3.9 -12.3 phosphogluconate dehydratase compare
Atu1589 -3.9 -7.6 aminotransferase, class I compare
Atu4098 -3.8 -12.2 quinolinate synthetase compare
Atu4096 -3.7 -11.7 nicotinate-nucleotide pyrophosphorylase compare
Atu4097 -3.5 -14.0 L-aspartate oxidase compare
Atu3731 -3.4 -8.5 5-formyltetrahydrofolate cyclo-ligase compare
Atu2155 -3.3 -19.0 methionine synthase compare
Atu1456 -3.2 -13.9 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3998 -3.2 -13.8 8-amino-7-oxononanoate synthase compare
Atu0641 -3.0 -5.8 hypothetical protein compare
Atu0029 -3.0 -5.8 S-adenosylhomocysteine hydrolase compare
Atu3469 -3.0 -4.0 phosphoglyceromutase compare
Atu1446 -3.0 -3.5 two component response regulator compare
Atu4001 -3.0 -10.2 3-oxoacyl-ACP synthase compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1454 -2.9 -9.3 siroheme synthase compare
Atu1620 -2.9 -11.9 triosephosphate isomerase compare
Atu2747 -2.8 -12.3 hypothetical protein compare
Atu1359 -2.8 -2.0 dnaK deletion suppressor protein compare
Atu3997 -2.8 -14.6 biotin synthetase compare
Atu4000 -2.8 -15.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu1748 -2.7 -11.3 NIFU-like protein compare
Atu4322 -2.6 -9.4 ribose ABC transporter permease compare
Atu2209 -2.5 -6.5 pyrroline-5-carboxylate reductase compare
Atu3730 -2.5 -2.8 hypothetical protein compare
Atu3290 -2.4 -12.8 phosphomethylpyrimidine kinase compare
Atu4321 -2.4 -12.0 ribose ABC transporter ATPase compare
Atu2205 -2.4 -6.6 transcriptional regulator, MarR family compare
Atu3288 -2.4 -7.8 hydroxyethylthiazole kinase compare
Atu2569 -2.4 -14.4 thiamine biosynthesis protein compare
Atu1685 -2.3 -1.9 hypothetical protein compare
Atu0434 -2.3 -3.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1455 -2.3 -7.3 hypothetical protein compare
Atu0502 -2.3 -6.1 acetyl-CoA acetyltransferase compare
Atu4319 -2.3 -8.9 AraC family transcriptional regulator compare
Atu3289 -2.2 -4.8 thiamine-phosphate pyrophosphorylase compare
Atu2127 -2.2 -9.3 L-carnitine dehydratase compare
Atu1462 -2.1 -13.3 glycine cleavage system protein P2 compare
Atu1464 -2.1 -9.0 glycine cleavage system T protein, aminomethyltransferase compare
Atu5164 -2.1 -1.2 type IV secretion protein AvhB3 compare
Atu3999 -2.1 -4.7 dithiobiotin synthetase compare
Atu2125 -2.1 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu1891 -2.0 -4.9 cobalamin biosynthesis protein compare
Atu1457 -1.9 -1.9 hypothetical protein compare
Atu0503 -1.9 -12.7 enoyl-CoA hydratase compare
Atu8115 -1.9 -4.7 Hypothetical Protein compare
Atu1604 -1.9 -12.4 poly-beta-hydroxybutyrate synthase compare
Atu1570 -1.9 -1.5 hypothetical protein compare
Atu4320 -1.8 -7.0 ribose ABC transporter substrate-binding protein compare
Atu0876 -1.8 -1.5 superoxide dismutase compare
Atu4217 -1.7 -2.1 TetR family transcriptional regulator compare
Atu1463 -1.7 -8.5 glycine cleavage system component H compare
Atu0501 -1.7 -10.0 acyl-CoA dehydrogenase compare
Atu0601 -1.6 -8.0 oxidoreductase compare
Atu6114 -1.6 -2.9 hypothetical protein compare
Atu1542 -1.5 -7.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0031 -1.5 -1.9 PTS system, IIA component compare
Atu0769 -1.5 -2.7 protoheme IX farnesyltransferase compare
Atu3663 -1.5 -1.7 hypothetical protein compare
Atu1572 -1.5 -6.5 hydrolase compare
Atu1163 -1.5 -2.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1774 -1.5 -7.0 ABC transporter, substrate binding protein (peptide) compare
Atu2554 -1.4 -2.2 lysyl-tRNA synthetase compare
Atu0086 -1.4 -1.6 ribosome-binding factor A compare
Atu4711 -1.4 -5.0 two component sensor kinase compare
Atu4317 -1.4 -3.7 TetR family transcriptional regulator compare
Atu5513 -1.3 -2.2 cold shock protein compare
Atu0331 -1.3 -2.5 sigma-54 modulation protein compare
Atu5115 -1.3 -1.5 hypothetical protein compare
Atu0332 -1.3 -6.5 RNA polymerase sigma-54 factor compare
Atu0422 -1.3 -2.4 ABC transporter, membrane spanning protein compare
Atu0723 -1.2 -1.9 FAD dependent oxidoreductase compare
Atu2335 -1.2 -2.8 hypothetical protein compare
Atu0405 -1.2 -8.6 long-chain-fatty-acid-CoA-ligase compare
Atu0346 -1.2 -1.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0319 -1.2 -1.6 ubiquinone biosynthesis protein compare
Atu2020 -1.1 -3.1 transcriptional regulator, TetR family compare
Atu2803 -1.1 -3.7 Cobalamin biosynthesis associated protein compare
Atu0361 -1.1 -2.1 transcriptional regulator compare
Atu0602 -1.1 -6.5 glutamine synthetase compare
Atu2795 -1.1 -5.0 cobalamin biosynthetic protein compare
Atu4773 -1.0 -2.0 two component response regulator compare
Atu1223 -1.0 -1.5 hypothetical protein compare
Atu0280 -1.0 -2.6 hypothetical protein compare
Atu4075 -1.0 -5.4 glycogen synthase compare
Atu0837 -1.0 -4.3 transcriptional regulator, MarR family compare
Atu2801 -1.0 -4.3 precorrin-2 C20 methyltransferase compare
Atu2555 -1.0 -2.9 L-lysine 2,3-aminomutase compare
Atu1445 -1.0 -2.7 two component sensor kinase compare
Atu0188 -1.0 -3.0 ABC transporter, membrane spanning protein (peptide) compare
Atu2808 -1.0 -5.6 cobyric acid synthase compare
Atu2368 -1.0 -1.6 hypothetical protein compare
Atu2804 -1.0 -5.9 cobaltochelatase subunit compare
Atu1679 -1.0 -2.7 peptidyl prolyl cis-trans isomerase compare
Atu2123 -0.9 -2.9 methylenetetrahydrofolate reductase compare
Atu1364 -0.9 -5.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2737 -0.9 -4.3 oxidoredutase compare
Atu2809 -0.9 -5.0 cobalamin biosynthesis protein compare
Atu5145 -0.9 -2.5 acetyltransferase compare
Atu4187 -0.9 -1.6 tRNA-Met compare
Atu2805 -0.9 -4.5 cobalamin synthesis protein compare
Atu0659 -0.9 -3.2 NTP pyrophosphohydrolase, MutT family compare
Atu3908 -0.9 -6.0 GntR family transcriptional regulator compare
Atu4532 -0.9 -3.9 shikimate 5-dehydrogenase compare
Atu3732 -0.9 -5.0 hemolysin compare
Atu0291 -0.9 -5.5 hypothetical protein compare
Atu5468 -0.9 -1.1 hypothetical protein compare
Atu2799 -0.9 -2.5 precorrin-6x reductase compare
Atu3750 -0.9 -2.5 thiamine-phosphate pyrophosphorylase compare
Atu2793 -0.8 -3.7 cobyrinic acid a,c-diamide synthase compare
Atu2770 -0.8 -4.1 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2798 -0.8 -3.4 precorrin-6y methyltransferase compare
Atu3287 -0.8 -2.3 thiamine biosynthesis associated protein compare
Atu5173 -0.8 -1.6 dehydrogenase compare
Atu2057 -0.8 -2.0 DNA helicase II compare
Atu0190 -0.8 -3.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2207 -0.8 -2.4 two component sensor kinase compare
Atu2797 -0.8 -1.7 cobalamin biosynthesis protein compare
Atu0149 -0.8 -3.1 enoyl-(acyl-carrier-protein) reductase compare
Atu2115 -0.8 -4.2 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2796 -0.8 -3.1 precorrin-4 C11-methyltransferase compare
Atu3518 -0.8 -4.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu2376 -0.8 -0.6 hypothetical protein compare
Atu2286 -0.8 -1.7 hypothetical protein compare
Atu2802 -0.8 -3.6 precorrin-8X methylmutase compare
Atu2128 -0.8 -5.6 acetolactate synthase large subunit compare
Atu1285 -0.8 -3.3 metal dependent hydrolase compare
Atu0777 -0.8 -0.8 hypothetical protein compare
Atu4053 -0.8 -1.0 succinoglycan biosynthesis protein compare
Atu0590 -0.7 -4.6 transcriptional regulator repressor compare
Atu4077 -0.7 -5.1 glycogen branching protein compare
Atu0141 -0.7 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu2267 -0.7 -3.1 hypothetical protein compare
Atu1694 -0.7 -2.0 hypothetical protein compare
Atu2800 -0.7 -1.8 precorrin-3B C17-methyltransferase compare
Atu1217 -0.7 -3.7 cysteine synthase compare
Atu1028 -0.7 -1.6 hypothetical protein compare
Atu4173 -0.7 -2.0 phosphoenolpyruvate-protein phosphotransferase compare
Atu1076 -0.7 -2.5 colicin V production protein compare
Atu3740 -0.7 -4.2 fructose bisphosphate aldolase compare
Atu2807 -0.7 -3.0 cob(I)alamin adenosyltransferase compare
Atu4161 -0.7 -1.1 hypothetical protein compare
Atu0520 -0.7 -2.2 chemotaxis receiver protein compare
Atu3466 -0.7 -1.6 ArsR family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Ribitol in Agrobacterium fabrum C58

For carbon source Ribitol across organisms