| | gene | name | fitness | t score | description | |
|---|
| b0912 | ihfB | -3.7 | -2.5 | integration host factor subunit beta (NCBI) | compare |
| b0471 | ybaB | -3.7 | -2.5 | hypothetical protein (NCBI) | compare |
| b2016 | yeeZ | -3.3 | -4.5 | predicted epimerase, with NAD(P)-binding Rossmann-fold domain (NCBI) | compare |
| b3742 | mioC | -3.2 | -3.7 | flavodoxin (NCBI) | compare |
| b2688 | gshA | -2.8 | -3.8 | glutamate--cysteine ligase (NCBI) | compare |
| b2168 | fruK | -2.6 | -2.4 | 1-phosphofructokinase (NCBI) | compare |
| b3961 | oxyR | -2.6 | -9.0 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1863 | ruvC | -2.5 | -2.4 | Holliday junction resolvase (NCBI) | compare |
| b0683 | fur | -2.4 | -1.6 | ferric uptake regulator (NCBI) | compare |
| b2392 | mntH | -2.4 | -5.3 | manganese transport protein MntH (NCBI) | compare |
| b3366 | nirD | -2.4 | -3.4 | nitrite reductase small subunit (NCBI) | compare |
| b2617 | smpA | -2.3 | -2.6 | small membrane protein A (VIMSS) | compare |
| b2058 | wcaB | -2.3 | -1.5 | predicted acyl transferase (NCBI) | compare |
| b1727 | yniC | -2.3 | -3.2 | predicted hydrolase (NCBI) | compare |
| b1187 | fadR | -2.3 | -4.9 | fatty acid metabolism regulator (NCBI) | compare |
| b0080 | fruR | -2.2 | -1.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0001 | thrL | -2.2 | -2.3 | thr operon leader peptide (NCBI) | compare |
| b4402 | yjjY | -2.2 | -1.5 | hypothetical protein (NCBI) | compare |
| b2553 | glnB | -2.2 | -4.3 | regulatory protein P-II for glutamine synthetase (NCBI) | compare |
| b1241 | adhE | -2.1 | -6.1 | fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase (NCBI) | compare |
| b0641 | rlpB | -2.1 | -2.1 | minor lipoprotein (NCBI) | compare |
| b1095 | fabF | -2.0 | -5.4 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b2906 | visC | -2.0 | -2.0 | hypothetical protein (NCBI) | compare |
| b1324 | tpx | -2.0 | -3.0 | thiol peroxidase (NCBI) | compare |
| b4515 | ybgT | -2.0 | -1.3 | hypothetical protein (NCBI) | compare |
| b0145 | dksA | -2.0 | -1.9 | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | compare |
| b0460 | hha | -2.0 | -5.4 | modulator of gene expression, with H-NS (NCBI) | compare |
| b1961 | dcm | -2.0 | -1.8 | DNA cytosine methylase (NCBI) | compare |
| b3844 | fre | -1.9 | -2.5 | NAD(P)H-flavin reductase (NCBI) | compare |
| b1658 | purR | -1.9 | -3.9 | DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) | compare |
| b4598 | yncL | -1.9 | -1.5 | hypothetical protein (RefSeq) | compare |
| b1778 | yeaA | -1.9 | -2.2 | methionine sulfoxide reductase B (NCBI) | compare |
| b4529 | ydbJ | -1.8 | -1.2 | hypothetical protein (NCBI) | compare |
| b0388 | aroL | -1.8 | -3.7 | shikimate kinase II (NCBI) | compare |
| b1130 | phoP | -1.8 | -5.1 | DNA-binding response regulator in two-component regulatory system with PhoQ (NCBI) | compare |
| b4585 | sroB | -1.7 | -0.8 | Novel sRNA, function unknown (RefSeq) | compare |
| b1739 | osmE | -1.7 | -3.1 | DNA-binding transcriptional activator (NCBI) | compare |
| b4151 | frdD | -1.7 | -2.0 | fumarate reductase subunit D (NCBI) | compare |
| b3652 | recG | -1.7 | -4.5 | ATP-dependent DNA helicase (NCBI) | compare |
| b1861 | ruvA | -1.7 | -1.5 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b1358 | ydaT | -1.7 | -1.5 | Rac prophage; predicted protein (NCBI) | compare |
| b3169 | nusA | -1.7 | -2.6 | transcription elongation factor NusA (NCBI) | compare |
| b4648 | ysaC | -1.7 | -2.1 | no description | compare |
| b1253 | yciA | -1.6 | -2.2 | predicted hydrolase (NCBI) | compare |
| b1531 | marA | -1.6 | -2.8 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b4172 | hfq | -1.6 | -1.1 | RNA-binding protein Hfq (NCBI) | compare |
| b1175 | minD | -1.6 | -3.2 | membrane ATPase of the MinC-MinD-MinE system (NCBI) | compare |
| b3741 | gidA | -1.6 | -3.2 | glucose-inhibited division protein A (NCBI) | compare |
| b3121 | yhaC | -1.5 | -1.7 | hypothetical protein (NCBI) | compare |
| b2343 | b2343 | -1.5 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1486 | ddpB | -1.5 | -2.6 | D-ala-D-ala transporter subunit (NCBI) | compare |
| b3609 | secB | -1.5 | -3.1 | export protein SecB (NCBI) | compare |
| b1278 | pgpB | -1.5 | -2.3 | phosphatidylglycerophosphatase B (NCBI) | compare |
| b2576 | srmB | -1.5 | -1.0 | ATP-dependent RNA helicase (NCBI) | compare |
| b2618 | b2618 | -1.5 | -2.7 | orf, hypothetical protein (VIMSS) | compare |
| b4178 | yjeB | -1.5 | -3.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0059 | hepA | -1.5 | -8.8 | ATP-dependent helicase HepA (NCBI) | compare |
| b1817 | manX | -1.5 | -4.6 | fused mannose-specific PTS enzymes: IIA component/IIB component (NCBI) | compare |
| b3237 | argR | -1.5 | -2.9 | arginine repressor (NCBI) | compare |
| b3042 | b3042 | -1.5 | -2.2 | orf, hypothetical protein (VIMSS) | compare |
| b1493 | gadB | -1.4 | -1.4 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b4545 | ypdJ | -1.4 | -2.5 | no description | compare |
| b1625 | ydgT | -1.4 | -5.2 | predicted regulator (NCBI) | compare |
| b3933 | ftsN | -1.4 | -6.7 | essential cell division protein (NCBI) | compare |
| b3858 | yihD | -1.4 | -1.3 | hypothetical protein (NCBI) | compare |
| b1129 | phoQ | -1.4 | -4.8 | sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI) | compare |
| b0450 | glnK | -1.4 | -2.2 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b3644 | yicC | -1.4 | -3.3 | hypothetical protein (NCBI) | compare |
| b2571 | rseB | -1.4 | -4.2 | periplasmic negative regulator of sigmaE (NCBI) | compare |
| b4045 | yjbJ | -1.4 | -2.0 | predicted stress response protein (NCBI) | compare |
| b0082 | mraW | -1.3 | -2.2 | S-adenosyl-methyltransferase (NCBI) | compare |
| b3934 | cytR | -1.3 | -5.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3764 | yifE | -1.3 | -3.0 | hypothetical protein (NCBI) | compare |
| b2055 | wcaE | -1.3 | -3.0 | predicted glycosyl transferase (NCBI) | compare |
| b3362 | yhfG | -1.3 | -3.1 | hypothetical protein (NCBI) | compare |
| b3706 | trmE | -1.3 | -3.8 | tRNA modification GTPase (NCBI) | compare |
| b2330 | yfcB | -1.3 | -1.2 | putative adenine-specific methylase (VIMSS) | compare |
| b3407 | yhgF | -1.3 | -7.2 | orf, hypothetical protein (VIMSS) | conserved |
| b1890 | motA | -1.3 | -2.6 | flagellar motor protein MotA (NCBI) | compare |
| b4631 | ykgQ | -1.3 | -1.7 | no description | compare |
| b4436 | ryeC | -1.3 | -0.8 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b1729 | ydjN | -1.3 | -2.3 | predicted transporter (NCBI) | compare |
| b1088 | yceD | -1.3 | -2.7 | hypothetical protein (NCBI) | compare |
| b4544 | yfbW | -1.3 | -2.6 | hypothetical protein (NCBI) | compare |
| b4406 | yaeP | -1.3 | -1.2 | hypothetical protein (NCBI) | compare |
| b1263 | trpD | -1.3 | -1.8 | bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) | compare |
| b3100 | yqjK | -1.3 | -2.4 | hypothetical protein (NCBI) | compare |
| b3163 | nlpI | -1.3 | -2.8 | hypothetical protein (NCBI) | compare |
| b2784 | relA | -1.3 | -5.0 | (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) | compare |
| b3397 | nudE | -1.2 | -5.4 | ADP-ribose diphosphatase (NCBI) | compare |
| b2421 | cysM | -1.2 | -1.8 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b3803 | hemX | -1.2 | -5.7 | predicted uroporphyrinogen III methylase (NCBI) | compare |
| b4477 | dgoA | -1.2 | -2.9 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase (NCBI) | compare |
| b1831 | proQ | -1.2 | -2.9 | putative solute/DNA competence effector (NCBI) | compare |
| b2517 | yfgB | -1.2 | -4.1 | predicted enzyme (NCBI) | compare |
| b3258 | panF | -1.2 | -5.4 | sodium/pantothenate symporter (VIMSS) | compare |
| b3766 | ilvL | -1.2 | -1.6 | ilvG operon leader peptide (NCBI) | compare |
| b0890 | ftsK | -1.2 | -3.3 | DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) | compare |
| b0735 | ybgE | -1.2 | -2.2 | conserved inner membrane protein (NCBI) | compare |
| b1176 | minC | -1.2 | -1.8 | septum formation inhibitor (NCBI) | compare |
| b2434 | b2434 | -1.2 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b3239 | yhcO | -1.2 | -1.8 | predicted barnase inhibitor (NCBI) | compare |
| b1728 | ydjM | -1.2 | -1.5 | predicted inner membrane protein regulated by LexA (RefSeq) | compare |
| b0212 | gloB | -1.2 | -1.8 | predicted hydroxyacylglutathione hydrolase (NCBI) | compare |
| b4480 | hdfR | -1.2 | -2.7 | transcriptional regulator HdfR (NCBI) | compare |
| b4589 | ylcI | -1.2 | -2.0 | hypothetical protein (RefSeq) | compare |
| b2080 | b2080 | -1.2 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2830 | nudH | -1.2 | -0.8 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2953 | yggU | -1.1 | -1.3 | orf, hypothetical protein (VIMSS) | compare |
| b1628 | rsxB | -1.1 | -1.8 | electron transport complex protein RnfB (NCBI) | compare |
| b4451 | ryhB | -1.1 | -1.0 | Regulatory sRNA mediating positive Fur regulon response; requires Hfq for function; global iron regulator; degraded by RNase E when bound to target (RefSeq) | compare |
| b1001 | yccE | -1.1 | -1.3 | hypothetical protein (NCBI) | compare |
| b3206 | npr | -1.1 | -3.1 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b3157 | yhbT | -1.1 | -2.6 | predicted lipid carrier protein (NCBI) | compare |
| b1064 | grxB | -1.1 | -3.1 | glutaredoxin 2 (Grx2) (NCBI) | compare |
| b1272 | sohB | -1.1 | -4.1 | predicted inner membrane peptidase (NCBI) | compare |
| b2829 | ptsP | -1.1 | -5.3 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1306 | pspC | -1.1 | -1.5 | DNA-binding transcriptional activator (NCBI) | compare |
| b3468 | yhhN | -1.1 | -5.5 | conserved inner membrane protein (NCBI) | compare |
| b1837 | yebW | -1.1 | -1.6 | orf, hypothetical protein (VIMSS) | compare |
| b4176 | yjeT | -1.1 | -2.2 | conserved inner membrane protein (NCBI) | compare |
| b3082 | ygjM | -1.1 | -1.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1819 | manZ | -1.1 | -2.4 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b0623 | cspE | -1.1 | -1.5 | cold shock protein E (NCBI) | compare |
| b3649 | rpoZ | -1.1 | -1.5 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b1992 | cobS | -1.1 | -1.9 | cobalamin synthase (NCBI) | compare |
| b1712 | ihfA | -1.1 | -1.4 | integration host factor subunit alpha (NCBI) | compare |
| b0049 | apaH | -1.0 | -3.0 | diadenosinetetraphosphatase (NCBI) | compare |
| b2181 | yejG | -1.0 | -3.0 | hypothetical protein (NCBI) | compare |
| b0013 | yaaI | -1.0 | -2.9 | hypothetical protein (NCBI) | compare |
| b0825 | mipB | -1.0 | -2.2 | putative transaldolase (VIMSS) | compare |
| b2947 | gshB | -1.0 | -2.1 | glutathione synthetase (NCBI) | compare |
| b1189 | dadA | -1.0 | -3.7 | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | compare |
| b1685 | ydiH | -1.0 | -1.0 | predicted protein (RefSeq) | compare |
| b3363 | ppiA | -1.0 | -3.9 | peptidyl-prolyl cis-trans isomerase A (rotamase A) (NCBI) | compare |
| b2683 | ygaH | -1.0 | -2.6 | predicted inner membrane protein (NCBI) | compare |
| b2007 | yeeX | -1.0 | -1.9 | conserved protein (RefSeq) | compare |
| b1078 | flgG | -1.0 | -3.5 | flagellar component of cell-distal portion of basal-body rod (NCBI) | compare |
| b2909 | ygfB | -1.0 | -3.2 | orf, hypothetical protein (VIMSS) | compare |
| b3781 | trxA | -1.0 | -2.1 | thioredoxin 1 (VIMSS) | compare |
| b0881 | clpS | -1.0 | -1.4 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b1021 | ycdP | -1.0 | -3.4 | predicted inner membrane protein (NCBI) | compare |
| b0340 | cynS | -1.0 | -0.9 | cyanate hydratase (NCBI) | compare |
| b1830 | prc | -1.0 | -3.0 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b4426 | isrA | -1.0 | -1.4 | unknown RNA (NCBI) | compare |
| b2977 | glcG | -1.0 | -1.8 | hypothetical protein (NCBI) | compare |
| b1446 | ydcY | -1.0 | -1.1 | hypothetical protein (NCBI) | compare |
| b1347 | ydaC | -1.0 | -1.6 | Rac prophage; predicted protein (NCBI) | compare |
| b1448 | yncA | -1.0 | -1.7 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2908 | pepP | -1.0 | -3.8 | proline aminopeptidase P II (NCBI) | compare |
| b2614 | grpE | -1.0 | -1.2 | heat shock protein (NCBI) | compare |
| b1013 | ycdC | -0.9 | -1.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1597 | asr | -0.9 | -2.1 | acid shock protein (VIMSS) | compare |
| b2910 | zapA | -0.9 | -2.4 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b3728 | pstS | -0.9 | -1.9 | phosphate transporter subunit (NCBI) | compare |
| b3834 | yigP | -0.9 | -2.7 | hypothetical protein (NCBI) | compare |
| b1623 | add | -0.9 | -2.2 | adenosine deaminase (NCBI) | compare |
| b0682 | ybfN | -0.9 | -2.1 | predicted lipoprotein (NCBI) | compare |
| b3466 | yhhL | -0.9 | -2.3 | conserved inner membrane protein (NCBI) | compare |
| b2419 | yfeK | -0.9 | -1.2 | hypothetical protein (NCBI) | compare |
| b2937 | speB | -0.9 | -3.0 | agmatinase (NCBI) | compare |
| b4337 | yjiO | -0.9 | -3.2 | multidrug efflux system protein (NCBI) | compare |
| b3162 | deaD | -0.9 | -2.0 | inducible ATP-independent RNA helicase (VIMSS) | compare |
| b2895 | fldB | -0.9 | -1.6 | flavodoxin 2 (NCBI) | compare |
| b4212 | ytfH | -0.9 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b2105 | yohL | -0.9 | -2.0 | hypothetical protein (NCBI) | compare |
| b2940 | yqgC | -0.9 | -2.4 | hypothetical protein (NCBI) | compare |
| b1011 | b1011 | -0.9 | -2.3 | putative synthetase (VIMSS) | compare |
| b1426 | ydcH | -0.9 | -0.7 | orf, hypothetical protein (VIMSS) | compare |
| b4618 | tisB | -0.9 | -2.0 | lexA-regulated toxic peptide (RefSeq) | compare |
| b1818 | manY | -0.9 | -1.1 | mannose-specific enzyme IIC component of PTS (NCBI) | compare |
| b3871 | bipA | -0.9 | -4.7 | GTP-binding protein (NCBI) | compare |
| b3257 | yhdT | -0.9 | -1.5 | conserved inner membrane protein (NCBI) | compare |
| b4202 | rpsR | -0.9 | -0.6 | 30S ribosomal protein S18 (NCBI) | compare |
| b1164 | ycgZ | -0.9 | -1.5 | hypothetical protein (NCBI) | compare |
| b3408 | feoA | -0.9 | -4.8 | ferrous iron transport protein A (NCBI) | compare |
| b0178 | hlpA | -0.9 | -1.6 | periplasmic chaperone (NCBI) | compare |
| b1183 | umuD | -0.9 | -1.2 | DNA polymerase V, subunit D (NCBI) | compare |
| b0226 | dinJ | -0.9 | -1.7 | predicted antitoxin of YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b3361 | fic | -0.9 | -2.0 | stationary-phase protein, cell division (NCBI) | compare |
| b0934 | ycbM | -0.9 | -1.0 | putative transport system permease protein (VIMSS) | compare |
| b2894 | xerD | -0.9 | -0.7 | site-specific tyrosine recombinase XerD (NCBI) | compare |
| b0346 | mhpR | -0.9 | -2.0 | DNA-binding transcriptional activator, 3HPP-binding (RefSeq) | compare |
| b3973 | birA | -0.9 | -0.9 | biotin--protein ligase (NCBI) | compare |
| b0113 | pdhR | -0.8 | -2.2 | transcriptional regulator of pyruvate dehydrogenase complex (NCBI) | compare |
| b0303 | ykgI | -0.8 | -1.8 | orf, hypothetical protein (VIMSS) | compare |
| b1222 | narX | -0.8 | -1.8 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b1259 | yciG | -0.8 | -1.2 | orf, hypothetical protein (VIMSS) | compare |
| b2326 | yfcM | -0.8 | -2.7 | hypothetical protein (NCBI) | compare |
| b1085 | b1085 | -0.8 | -1.0 | orf, hypothetical protein (VIMSS) | compare |
| b4416 | rybA | -0.8 | -1.0 | unknown RNA (NCBI) | compare |
| b1954 | dsrA | -0.8 | -1.3 | regulatory antisense RNA (NCBI) | compare |
| b1588 | ynfF | -0.8 | -1.9 | oxidoreductase subunit (RefSeq) | compare |
| b4454 | rdlD | -0.8 | -2.1 | sRNA antisense regulator affects LdrD translation; proposed addiction module in LDR-D repeat, with toxic peptide LdrD (RefSeq) | compare |
| b3465 | yhhF | -0.8 | -2.6 | predicted methyltransferase (NCBI) | compare |
| b2570 | rseC | -0.8 | -2.6 | RseC protein involved in reduction of the SoxR iron-sulfur cluster (NCBI) | compare |
| b1304 | pspA | -0.8 | -1.5 | regulatory protein for phage-shock-protein operon (NCBI) | compare |
| b4060 | yjcB | -0.8 | -2.3 | orf, hypothetical protein (VIMSS) | compare |
| b2377 | yfdY | -0.8 | -1.4 | predicted inner membrane protein (NCBI) | compare |
| b4148 | sugE | -0.8 | -2.5 | suppresses groEL, may be chaperone (VIMSS) | compare |