Experiment set2IT019 for Agrobacterium fabrum C58

Compare to:

methyl-beta-D-xylopyranoside carbon source

200 most important genes:

  gene name fitness t score description  
Atu0038 -8.0 -5.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1850 -7.9 -5.4 phosphoribosylformylglycinamidine synthetase II compare
Atu1845 -7.5 -5.2 phosphoribosylformylglycinamidine synthase I compare
Atu1750 -7.4 -7.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu1588 -7.1 -6.9 homoserine dehydrogenase compare
Atu2709 -7.0 -16.2 3-isopropylmalate dehydratase, large subunit compare
Atu2289 -6.8 -16.5 anthranilate synthase component I and II compare
Atu1205 -6.8 -10.4 threonine dehydratase compare
Atu2264 -6.7 -12.1 2-isopropylmalate synthase compare
Atu0298 -6.7 -6.5 orotidine 5 compare
Atu0099 -6.7 -11.2 prephenate dehydratase compare
Atu3706 -6.6 -7.9 D-3-phosphoglycerate dehydrogenase compare
Atu0486 -6.6 -6.5 dihydroorotate dehydrogenase compare
Atu2040 -6.4 -4.4 phosphoserine phosphatase compare
Atu2036 -6.4 -15.5 acetolactate synthase III, large subunit compare
Atu0432 -6.3 -10.5 O-succinylhomoserine sulfhydrylase compare
Atu0679 -6.3 -7.5 ATP phosphoribosyltransferase compare
Atu4482 -6.2 -14.5 xylulokinase conserved
Atu0678 -6.0 -4.2 histidyl-tRNA synthetase compare
Atu2791 -5.9 -9.0 3-isopropylmalate dehydrogenase compare
Atu1075 -5.9 -8.1 amidophosphoribosyltransferase compare
Atu2726 -5.8 -23.4 pyruvate carboxylase compare
Atu3885 -5.8 -8.0 inositol monophosphatase compare
Atu4483 -5.8 -16.4 xylose isomerase conserved
Atu2718 -5.8 -8.9 homoserine O-succinyltransferase compare
Atu3783 -5.8 -15.3 glutamate synthase subunit beta compare
Atu3784 -5.8 -29.5 glutamate synthase large subunit compare
Atu0537 -5.8 -5.6 histidinol dehydrogenase compare
Atu3754 -5.7 -8.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1688 -5.7 -6.8 indole-3-glycerol-phosphate synthase compare
Atu2650 -5.7 -15.9 glycerol-3-phosphate dehydrogenase compare
Atu1687 -5.6 -10.7 anthranilate phosphoribosyltransferase compare
Atu0399 -5.6 -8.5 dihydroorotase compare
Atu0400 -5.6 -7.6 orotate phosphoribosyltransferase compare
Atu1141 -5.4 -7.9 Phosphoribosylglycinamide synthetase compare
Atu3242 -5.3 -10.8 hypothetical protein conserved
Atu1140 -5.3 -6.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1307 -5.3 -8.8 dihydroorotase compare
Atu3707 -5.2 -5.0 phosphoserine aminotransferase compare
Atu0043 -5.1 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu1308 -5.1 -7.2 aspartate carbamoyl transferase catalytic subunit compare
Atu0647 -5.1 -7.0 phosphoribosylamine--glycine ligase compare
Atu0017 -5.1 -5.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4481 -5.0 -11.4 LacI family transcriptional regulator compare
Atu3755 -5.0 -6.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0039 -4.9 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu3240 -4.8 -14.0 ROK family transcriptional regulator conserved
Atu1030 -4.7 -3.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1844 -4.6 -5.1 Phosphoribosylformylglycinamidine synthetase compare
Atu3483 -4.6 -8.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2790 -4.2 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu2015 -4.1 -13.5 aminotransferase compare
Atu3241 -4.1 -14.5 dehydrogenase conserved
Atu3739 -4.0 -4.6 phosphoglycerate kinase compare
Atu3482 -4.0 -12.6 pantoate--beta-alanine ligase compare
Atu0041 -3.9 -3.4 glutamine amidotransferase compare
Atu0030 -3.9 -2.8 phosphocarrier protein HPr compare
Atu0502 -3.9 -12.0 acetyl-CoA acetyltransferase compare
Atu2548 -3.7 -18.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1456 -3.5 -13.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0501 -3.5 -16.8 acyl-CoA dehydrogenase compare
Atu1686 -3.4 -17.1 peptidyl-prolyl cis-trans isomerse D compare
Atu1454 -3.4 -10.8 siroheme synthase compare
Atu3731 -3.3 -11.2 5-formyltetrahydrofolate cyclo-ligase compare
Atu0503 -3.3 -18.4 enoyl-CoA hydratase compare
Atu0641 -3.2 -5.7 hypothetical protein compare
Atu3730 -3.2 -2.9 hypothetical protein compare
Atu1589 -3.1 -7.8 aminotransferase, class I compare
Atu0792 -3.0 -6.9 hypothetical protein compare
Atu0031 -3.0 -2.5 PTS system, IIA component compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4096 -2.9 -11.5 nicotinate-nucleotide pyrophosphorylase compare
Atu1455 -2.7 -5.6 hypothetical protein compare
Atu0062 -2.7 -11.4 transcriptional regulator, ROK family compare
Atu2155 -2.7 -17.2 methionine synthase compare
Atu1463 -2.6 -7.6 glycine cleavage system component H compare
Atu1620 -2.6 -12.3 triosephosphate isomerase compare
Atu0322 -2.6 -10.6 enoyl CoA hydratase compare
Atu1462 -2.5 -14.5 glycine cleavage system protein P2 compare
Atu3469 -2.5 -4.3 phosphoglyceromutase compare
Atu1446 -2.4 -3.7 two component response regulator compare
Atu4097 -2.4 -11.2 L-aspartate oxidase compare
Atu0405 -2.4 -16.7 long-chain-fatty-acid-CoA-ligase compare
Atu3999 -2.3 -5.0 dithiobiotin synthetase compare
Atu4098 -2.3 -11.5 quinolinate synthetase compare
Atu1464 -2.3 -7.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu1359 -2.3 -1.8 dnaK deletion suppressor protein compare
Atu6098 -2.2 -1.2 transcriptional regulator, HTH family compare
Atu2747 -2.2 -12.1 hypothetical protein compare
Atu3997 -2.1 -14.4 biotin synthetase compare
Atu1457 -2.0 -3.0 hypothetical protein compare
Atu0422 -2.0 -2.6 ABC transporter, membrane spanning protein compare
Atu3234 -2.0 -12.7 NAD binding oxidoreductase compare
Atu0598 -2.0 -9.5 phosphogluconate dehydratase compare
Atu0769 -1.9 -2.9 protoheme IX farnesyltransferase compare
Atu0029 -1.9 -7.9 S-adenosylhomocysteine hydrolase compare
Atu0189 -1.8 -4.7 ABC transporter, membrane spanning protein (peptide) compare
Atu3235 -1.8 -10.0 hypothetical protein conserved
Atu1748 -1.8 -9.8 NIFU-like protein compare
Atu4711 -1.7 -7.4 two component sensor kinase compare
Atu6114 -1.7 -2.9 hypothetical protein compare
Atu4000 -1.7 -11.5 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu1685 -1.6 -1.6 hypothetical protein compare
Atu0876 -1.6 -2.1 superoxide dismutase compare
Atu2205 -1.6 -6.6 transcriptional regulator, MarR family compare
Atu2209 -1.6 -4.8 pyrroline-5-carboxylate reductase compare
Atu4773 -1.6 -1.7 two component response regulator compare
Atu3236 -1.5 -9.2 sugar ABC transporter ATPase compare
Atu0401 -1.5 -6.8 fructokinase compare
Atu2239 -1.5 -3.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3908 -1.5 -8.9 GntR family transcriptional regulator compare
Atu3998 -1.5 -8.9 8-amino-7-oxononanoate synthase compare
Atu3598 -1.4 -2.6 thiol:disulfide interchange protein compare
Atu3237 -1.4 -7.7 sugar ABC transporter permease compare
Atu4001 -1.4 -5.9 3-oxoacyl-ACP synthase compare
Atu3740 -1.4 -7.3 fructose bisphosphate aldolase compare
Atu4317 -1.4 -3.2 TetR family transcriptional regulator compare
Atu1286 -1.3 -6.2 hypothetical protein compare
Atu1774 -1.3 -6.3 ABC transporter, substrate binding protein (peptide) compare
Atu1546 -1.3 -3.9 transcriptional regulator, MerR family compare
Atu8115 -1.3 -3.8 Hypothetical Protein compare
Atu0434 -1.3 -1.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1542 -1.3 -4.5 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2532 -1.3 -3.8 transcriptional regulator, MarR family compare
Atu3239 -1.3 -8.7 sugar ABC transporter substrate-binding protein compare
Atu3238 -1.3 -7.1 sugar ABC transporter permease compare
Atu0188 -1.2 -3.0 ABC transporter, membrane spanning protein (peptide) compare
Atu0346 -1.2 -3.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1904 -1.2 -2.6 transcriptional regulator compare
Atu2125 -1.2 -2.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu1604 -1.2 -8.8 poly-beta-hydroxybutyrate synthase compare
Atu3288 -1.2 -5.2 hydroxyethylthiazole kinase compare
Atu0768 -1.2 -7.9 cytochrome-c oxidase chain I compare
Atu2127 -1.2 -6.1 L-carnitine dehydratase compare
Atu1242 -1.2 -5.8 cytochrome oxidase assembly factor compare
Atu3162 -1.1 -8.2 LacI family transcriptional regulator compare
Atu6165 -1.1 -1.2 hypothetical protein compare
Atu2569 -1.1 -6.9 thiamine biosynthesis protein compare
Atu2267 -1.1 -3.5 hypothetical protein compare
Atu0101 -1.1 -4.3 cytochrome c compare
Atu0291 -1.1 -6.1 hypothetical protein compare
Atu1705 -1.1 -3.1 SEC-independent protein translocase protein compare
Atu0601 -1.1 -6.4 oxidoreductase compare
Atu8034 -1.1 -4.1 hypothetical protein compare
Atu1339 -1.1 -3.0 ribonuclease E compare
Atu2207 -1.1 -2.2 two component sensor kinase compare
Atu1581 -1.1 -2.0 hypothetical protein compare
Atu0331 -1.1 -1.8 sigma-54 modulation protein compare
Atu3290 -1.0 -5.1 phosphomethylpyrimidine kinase compare
Atu0361 -1.0 -2.1 transcriptional regulator compare
Atu5125 -1.0 -3.9 GntR family transcriptional regulator compare
Atu2376 -1.0 -0.8 hypothetical protein compare
Atu1770 -1.0 -5.2 glutamine synthetase compare
Atu0767 -1.0 -4.1 cytochrome c oxidase subunit II compare
Atu1149 -1.0 -1.4 adenylate cyclase compare
Atu2237 -1.0 -4.3 cytochrome c1 compare
Atu8018 -1.0 -1.0 hypothetical protein compare
Atu1526 -0.9 -6.2 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu1891 -0.9 -3.0 cobalamin biosynthesis protein compare
Atu2238 -0.9 -4.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu5160 -0.9 -2.0 transcriptional regulator protein compare
Atu0771 -0.9 -5.5 cytochrome c oxidase subunit III compare
Atu0149 -0.9 -3.8 enoyl-(acyl-carrier-protein) reductase compare
Atu0977 -0.9 -2.8 serine protease DO-like protease compare
Atu1364 -0.9 -4.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2808 -0.9 -4.9 cobyric acid synthase compare
Atu2796 -0.9 -4.1 precorrin-4 C11-methyltransferase compare
Atu2821 -0.9 -4.9 transcriptional regulator, GntR family compare
Atu2115 -0.9 -4.8 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2800 -0.9 -3.4 precorrin-3B C17-methyltransferase compare
Atu4685 -0.9 -6.2 LacI family transcriptional regulator compare
Atu2770 -0.9 -3.8 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu3751 -0.9 -5.0 hypothetical protein conserved
Atu0770 -0.9 -4.3 cytochrome C oxidase assembly protein compare
Atu2801 -0.9 -2.9 precorrin-2 C20 methyltransferase compare
Atu6189 -0.9 -1.1 protein secretion chaperone compare
Atu1074 -0.9 -6.0 NAD/NADP dependent oxidoreductase compare
Atu3732 -0.8 -5.4 hemolysin compare
Atu2805 -0.8 -4.2 cobalamin synthesis protein compare
Atu0981 -0.8 -5.9 glutamate-ammonia-ligase adenylyltransferase compare
Atu0723 -0.8 -1.1 FAD dependent oxidoreductase compare
Atu2809 -0.8 -4.0 cobalamin biosynthesis protein compare
Atu3750 -0.8 -2.6 thiamine-phosphate pyrophosphorylase compare
Atu2795 -0.8 -5.2 cobalamin biosynthetic protein compare
Atu1103 -0.8 -1.8 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1204 -0.8 -3.5 potassium uptake protein compare
Atu4514 -0.8 -2.9 RpiR family transcriptional regulator compare
Atu2802 -0.8 -4.5 precorrin-8X methylmutase compare
Atu2428 -0.8 -4.1 exopolysaccharide production protein PssB compare
Atu0339 -0.8 -1.8 hypothetical protein compare
Atu0190 -0.8 -4.3 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3289 -0.8 -2.8 thiamine-phosphate pyrophosphorylase compare
Atu0659 -0.8 -3.2 NTP pyrophosphohydrolase, MutT family compare
Atu4477 -0.8 -4.1 TetR family transcriptional regulator compare
Atu1449 -0.8 -3.3 potassium uptake protein compare
Atu2675 -0.7 -2.5 hypothetical protein compare
Atu5057 -0.7 -1.1 hypothetical protein compare
Atu3712 -0.7 -1.4 hypothetical protein compare
Atu4161 -0.7 -1.2 hypothetical protein compare
Atu0419 -0.7 -1.5 two component sensor kinase compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source methyl-beta-D-xylopyranoside in Agrobacterium fabrum C58

For carbon source methyl-beta-D-xylopyranoside across organisms