Experiment set2IT018 for Agrobacterium fabrum C58

Compare to:

methyl-beta-D-xylopyranoside carbon source

200 most important genes:

  gene name fitness t score description  
Atu3754 -7.4 -8.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2289 -7.3 -13.1 anthranilate synthase component I and II compare
Atu2650 -7.0 -11.7 glycerol-3-phosphate dehydrogenase compare
Atu2264 -7.0 -11.7 2-isopropylmalate synthase compare
Atu0038 -6.9 -6.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2726 -6.6 -22.9 pyruvate carboxylase compare
Atu0432 -6.5 -8.9 O-succinylhomoserine sulfhydrylase compare
Atu1075 -6.5 -6.3 amidophosphoribosyltransferase compare
Atu1308 -6.5 -7.7 aspartate carbamoyl transferase catalytic subunit compare
Atu2036 -6.4 -13.8 acetolactate synthase III, large subunit compare
Atu2791 -6.2 -8.5 3-isopropylmalate dehydrogenase compare
Atu3482 -6.2 -10.6 pantoate--beta-alanine ligase compare
Atu3707 -6.1 -4.2 phosphoserine aminotransferase compare
Atu1687 -6.1 -10.2 anthranilate phosphoribosyltransferase compare
Atu0679 -6.1 -7.2 ATP phosphoribosyltransferase compare
Atu0400 -6.1 -5.9 orotate phosphoribosyltransferase compare
Atu1750 -6.0 -8.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu2709 -6.0 -20.0 3-isopropylmalate dehydratase, large subunit compare
Atu3783 -6.0 -18.7 glutamate synthase subunit beta compare
Atu0017 -6.0 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4481 -5.9 -11.4 LacI family transcriptional regulator compare
Atu0678 -5.8 -5.7 histidyl-tRNA synthetase compare
Atu4482 -5.8 -15.5 xylulokinase conserved
Atu2040 -5.8 -5.6 phosphoserine phosphatase compare
Atu1588 -5.6 -10.8 homoserine dehydrogenase compare
Atu1205 -5.6 -14.9 threonine dehydratase compare
Atu3706 -5.5 -9.9 D-3-phosphoglycerate dehydrogenase compare
Atu0099 -5.5 -13.0 prephenate dehydratase compare
Atu3784 -5.5 -29.2 glutamate synthase large subunit compare
Atu4483 -5.5 -19.1 xylose isomerase conserved
Atu2718 -5.4 -9.7 homoserine O-succinyltransferase compare
Atu2790 -5.2 -3.2 3-isopropylmalate dehydratase, small subunit compare
Atu1141 -5.2 -9.0 Phosphoribosylglycinamide synthetase compare
Atu1845 -5.2 -6.2 phosphoribosylformylglycinamidine synthase I compare
Atu0298 -5.2 -9.3 orotidine 5 compare
Atu3885 -5.1 -11.7 inositol monophosphatase compare
Atu0399 -5.0 -8.4 dihydroorotase compare
Atu0537 -5.0 -9.0 histidinol dehydrogenase compare
Atu3242 -5.0 -8.7 hypothetical protein conserved
Atu1688 -5.0 -7.6 indole-3-glycerol-phosphate synthase compare
Atu0041 -5.0 -3.4 glutamine amidotransferase compare
Atu2015 -4.9 -14.3 aminotransferase compare
Atu0039 -4.9 -3.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu1850 -4.9 -4.5 phosphoribosylformylglycinamidine synthetase II compare
Atu1140 -4.9 -5.3 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3739 -4.8 -4.1 phosphoglycerate kinase compare
Atu1030 -4.7 -3.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0486 -4.6 -8.0 dihydroorotate dehydrogenase compare
Atu3241 -4.5 -13.2 dehydrogenase conserved
Atu0647 -4.4 -8.4 phosphoribosylamine--glycine ligase compare
Atu3240 -4.2 -13.9 ROK family transcriptional regulator conserved
Atu3755 -4.1 -5.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1307 -4.1 -6.4 dihydroorotase compare
Atu3483 -4.0 -9.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0641 -3.8 -5.8 hypothetical protein compare
Atu0043 -3.6 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu1456 -3.6 -12.2 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1844 -3.5 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu1359 -3.5 -2.1 dnaK deletion suppressor protein compare
Atu2548 -3.4 -16.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1446 -3.4 -4.4 two component response regulator compare
Atu1686 -3.4 -17.1 peptidyl-prolyl cis-trans isomerse D compare
Atu0030 -3.4 -2.9 phosphocarrier protein HPr compare
Atu0792 -3.3 -8.5 hypothetical protein compare
Atu0501 -3.3 -13.6 acyl-CoA dehydrogenase compare
Atu1454 -3.2 -7.4 siroheme synthase compare
Atu1589 -3.1 -8.6 aminotransferase, class I compare
Atu0503 -3.1 -18.3 enoyl-CoA hydratase compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1455 -2.9 -5.4 hypothetical protein compare
Atu3731 -2.8 -8.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu0062 -2.8 -11.7 transcriptional regulator, ROK family compare
Atu2155 -2.8 -18.1 methionine synthase compare
Atu0502 -2.7 -7.0 acetyl-CoA acetyltransferase compare
Atu1463 -2.6 -6.6 glycine cleavage system component H compare
Atu1620 -2.6 -13.1 triosephosphate isomerase compare
Atu4098 -2.5 -12.0 quinolinate synthetase compare
Atu0405 -2.5 -17.6 long-chain-fatty-acid-CoA-ligase compare
Atu4096 -2.4 -9.7 nicotinate-nucleotide pyrophosphorylase compare
Atu1462 -2.4 -15.2 glycine cleavage system protein P2 compare
Atu2209 -2.4 -6.4 pyrroline-5-carboxylate reductase compare
Atu5540 -2.3 -1.7 hypothetical protein compare
Atu0422 -2.3 -2.8 ABC transporter, membrane spanning protein compare
Atu0029 -2.3 -6.9 S-adenosylhomocysteine hydrolase compare
Atu0434 -2.3 -3.2 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu6098 -2.2 -1.3 transcriptional regulator, HTH family compare
Atu4097 -2.1 -11.1 L-aspartate oxidase compare
Atu0598 -2.1 -9.4 phosphogluconate dehydratase compare
Atu1748 -2.1 -7.2 NIFU-like protein compare
Atu3469 -2.1 -4.0 phosphoglyceromutase compare
Atu1457 -2.1 -4.2 hypothetical protein compare
Atu2747 -2.0 -11.5 hypothetical protein compare
Atu3997 -1.9 -13.6 biotin synthetase compare
Atu1464 -1.9 -9.1 glycine cleavage system T protein, aminomethyltransferase compare
Atu3235 -1.9 -8.2 hypothetical protein conserved
Atu6114 -1.9 -2.2 hypothetical protein compare
Atu0421 -1.8 -2.4 ABC transporter, membrane spanning protein compare
Atu0346 -1.8 -4.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2205 -1.8 -6.7 transcriptional regulator, MarR family compare
Atu4000 -1.8 -13.2 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu4217 -1.8 -2.1 TetR family transcriptional regulator compare
Atu3999 -1.8 -3.9 dithiobiotin synthetase compare
Atu3237 -1.7 -7.9 sugar ABC transporter permease compare
Atu3234 -1.7 -10.2 NAD binding oxidoreductase compare
Atu2439 -1.7 -1.6 hypothetical protein compare
Atu8115 -1.6 -4.3 Hypothetical Protein compare
Atu3998 -1.6 -9.5 8-amino-7-oxononanoate synthase compare
Atu4711 -1.6 -5.0 two component sensor kinase compare
Atu4773 -1.6 -1.6 two component response regulator compare
Atu0322 -1.6 -5.1 enoyl CoA hydratase compare
Atu0225 -1.6 -1.6 hypothetical protein compare
Atu4001 -1.5 -6.8 3-oxoacyl-ACP synthase compare
Atu3908 -1.5 -9.7 GntR family transcriptional regulator compare
Atu3239 -1.5 -9.8 sugar ABC transporter substrate-binding protein compare
Atu0086 -1.5 -1.7 ribosome-binding factor A compare
Atu1286 -1.4 -6.7 hypothetical protein compare
Atu0769 -1.4 -1.8 protoheme IX farnesyltransferase compare
Atu1685 -1.4 -1.5 hypothetical protein compare
Atu3238 -1.3 -7.9 sugar ABC transporter permease compare
Atu3236 -1.3 -8.8 sugar ABC transporter ATPase compare
Atu0031 -1.3 -1.8 PTS system, IIA component compare
Atu2532 -1.3 -3.8 transcriptional regulator, MarR family compare
Atu3288 -1.3 -7.4 hydroxyethylthiazole kinase compare
Atu1774 -1.3 -6.8 ABC transporter, substrate binding protein (peptide) compare
Atu3763 -1.3 -1.9 hypothetical protein compare
Atu2127 -1.3 -6.1 L-carnitine dehydratase compare
Atu4317 -1.2 -2.7 TetR family transcriptional regulator compare
Atu1182 -1.2 -2.8 hypothetical protein compare
Atu1546 -1.2 -5.6 transcriptional regulator, MerR family compare
Atu1163 -1.2 -2.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2770 -1.2 -5.8 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu1604 -1.2 -9.2 poly-beta-hydroxybutyrate synthase compare
Atu2123 -1.1 -4.5 methylenetetrahydrofolate reductase compare
Atu3730 -1.1 -1.8 hypothetical protein compare
Atu1028 -1.1 -2.3 hypothetical protein compare
Atu3290 -1.1 -6.2 phosphomethylpyrimidine kinase compare
Atu0401 -1.1 -3.7 fructokinase compare
Atu2569 -1.1 -8.2 thiamine biosynthesis protein compare
Atu1891 -1.1 -3.2 cobalamin biosynthesis protein compare
Atu0876 -1.1 -1.5 superoxide dismutase compare
Atu0677 -1.1 -2.9 hypothetical protein compare
Atu0190 -1.1 -5.8 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1242 -1.0 -6.6 cytochrome oxidase assembly factor compare
Atu0770 -1.0 -5.3 cytochrome C oxidase assembly protein compare
Atu3162 -1.0 -5.2 LacI family transcriptional regulator compare
Atu0976 -1.0 -2.2 cycL protein compare
Atu4346 -1.0 -3.8 hypothetical protein compare
Atu0771 -1.0 -4.3 cytochrome c oxidase subunit III compare
Atu1542 -1.0 -4.1 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2821 -1.0 -4.2 transcriptional regulator, GntR family compare
Atu1705 -1.0 -3.3 SEC-independent protein translocase protein compare
Atu0768 -1.0 -6.0 cytochrome-c oxidase chain I compare
Atu4514 -1.0 -3.4 RpiR family transcriptional regulator compare
Atu2115 -1.0 -5.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0601 -1.0 -5.5 oxidoreductase compare
Atu2017 -1.0 -1.0 hypothetical protein compare
Atu2267 -1.0 -4.3 hypothetical protein compare
Atu2803 -0.9 -3.1 Cobalamin biosynthesis associated protein compare
Atu2554 -0.9 -1.6 lysyl-tRNA synthetase compare
Atu2809 -0.9 -5.4 cobalamin biosynthesis protein compare
Atu0895 -0.9 -2.8 ABC transporter, substrate binding protein compare
Atu2800 -0.9 -3.4 precorrin-3B C17-methyltransferase compare
Atu2238 -0.9 -5.8 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2798 -0.9 -3.8 precorrin-6y methyltransferase compare
Atu1770 -0.9 -5.3 glutamine synthetase compare
Atu1219 -0.9 -0.9 hypothetical protein compare
Atu3732 -0.9 -5.0 hemolysin compare
Atu2805 -0.9 -4.6 cobalamin synthesis protein compare
Atu0361 -0.9 -2.0 transcriptional regulator compare
Atu2207 -0.9 -2.6 two component sensor kinase compare
Atu0767 -0.9 -4.0 cytochrome c oxidase subunit II compare
Atu2807 -0.9 -3.7 cob(I)alamin adenosyltransferase compare
Atu1526 -0.9 -4.7 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu0291 -0.9 -5.2 hypothetical protein compare
Atu1074 -0.8 -4.6 NAD/NADP dependent oxidoreductase compare
Atu1364 -0.8 -3.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3289 -0.8 -1.6 thiamine-phosphate pyrophosphorylase compare
Atu1904 -0.8 -5.0 transcriptional regulator compare
Atu6106 -0.8 -2.8 conserved hypothetical protein compare
Atu1717 -0.8 -4.9 long-chain fatty acid transport protein compare
Atu2804 -0.8 -6.0 cobaltochelatase subunit compare
Atu2640 -0.8 -2.6 hypothetical protein compare
Atu2239 -0.8 -2.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu5146 -0.8 -1.3 hypothetical protein compare
Atu2719 -0.8 -5.3 aldose epimerase compare
Atu2808 -0.8 -4.0 cobyric acid synthase compare
Atu1327 -0.8 -2.4 NADH-ubiquinone oxidoreductase compare
Atu4173 -0.8 -2.3 phosphoenolpyruvate-protein phosphotransferase compare
Atu1339 -0.8 -2.4 ribonuclease E compare
Atu2286 -0.8 -1.8 hypothetical protein compare
Atu0784 -0.8 -3.0 hypothetical protein compare
Atu3712 -0.8 -1.6 hypothetical protein compare
Atu1285 -0.8 -4.1 metal dependent hydrolase compare
Atu2797 -0.7 -2.3 cobalamin biosynthesis protein compare
Atu4685 -0.7 -3.6 LacI family transcriptional regulator compare
Atu0188 -0.7 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu0977 -0.7 -2.9 serine protease DO-like protease compare
Atu3740 -0.7 -4.3 fructose bisphosphate aldolase compare
Atu2795 -0.7 -4.0 cobalamin biosynthetic protein compare
Atu3963 -0.7 -3.5 GntR family transcriptional regulator compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source methyl-beta-D-xylopyranoside in Agrobacterium fabrum C58

For carbon source methyl-beta-D-xylopyranoside across organisms