Experiment set2IT018 for Agrobacterium fabrum C58

Compare to:

methyl-beta-D-xylopyranoside carbon source

200 most detrimental genes:

  gene name fitness t score description  
Atu8054 +1.4 1.6 hypothetical protein compare
Atu4609 +1.1 9.6 glycosyltransferase compare
Atu3001 +1.1 2.5 hypothetical protein compare
Atu4166 +1.1 3.5 UDP-glucose 4-epimerase compare
Atu4608 +1.0 8.6 hypothetical protein compare
Atu6138 +1.0 5.3 Repressor of the acc and arc operons compare
Atu2183 +1.0 5.3 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2582 +0.9 5.8 UDP-glucose/GDP-mannose dehydrogenase compare
Atu1503 +0.9 1.8 hypothetical protein compare
Atu2379 +0.9 6.0 phosphomannomutase compare
Atu4613 +0.9 7.1 glycosyltransferase compare
Atu4610 +0.9 5.7 sugar nucleotide epimerase/dehydratase compare
Atu3353 +0.8 5.9 mannose-1-phosphate guanylyltransferase compare
Atu4614 +0.8 5.3 glycosyltransferase compare
Atu3011 +0.8 2.6 ArsR family transcriptional regulator compare
Atu4615 +0.8 6.7 glucose-1-phosphate thymidylyltransferase compare
Atu0592 +0.8 4.8 ABC transporter, membrane spanning protein compare
Atu6131 +0.8 4.2 TraR Antiactivator compare
Atu2585 +0.8 3.8 hypothetical protein compare
Atu4617 +0.7 5.3 dTDP-D-glucose-4,6-dehydratase compare
Atu4618 +0.7 5.8 dTDP-rhamnose-3,5-epimerase compare
Atu2590 +0.7 5.1 hypothetical protein compare
Atu3515 +0.7 3.8 hypothetical protein compare
Atu4606 +0.7 4.4 hypothetical protein compare
Atu2584 +0.7 2.8 hypothetical protein compare
Atu3461 +0.7 1.7 GntR family transcriptional regulator compare
Atu0594 +0.7 4.6 alpha-glucosidase compare
Atu8041 +0.7 2.8 hypothetical protein compare
Atu0184 +0.7 2.9 glucokinase compare
Atu1836 +0.7 2.0 hypothetical protein compare
Atu1302 +0.6 1.7 hypothetical protein compare
Atu5468 +0.6 2.3 hypothetical protein compare
Atu3311 +0.6 5.5 phosphomannose isomerase compare
Atu0591 +0.6 5.1 ABC transporter, substrate binding protein (alpha-glucoside) compare
Atu4607 +0.6 4.1 sugar acetylase compare
Atu0572 +0.6 2.2 hypothetical protein compare
Atu1846 +0.6 1.4 hypothetical protein compare
Atu0730 +0.6 2.4 hypothetical protein compare
Atu0595 +0.6 4.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu8202 +0.6 2.5 hypothetical protein compare
Atu2406 +0.6 2.3 hypothetical protein compare
Atu0917 +0.6 2.3 hypothetical protein compare
Atu1225 +0.6 1.3 hypothetical protein compare
Atu2583 +0.6 4.2 glycosyltransferase compare
Atu2577 +0.6 5.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0986 +0.6 1.2 hypothetical protein compare
Atu8087 +0.6 0.9 putative peptidoglycan binding protein compare
Atu0940 +0.6 2.3 PemK protein compare
Atu8138 +0.6 1.1 hypothetical protein compare
Atu1254 +0.5 1.3 transcriptional regulator, ArsR family compare
Atu0593 +0.5 2.6 ABC transporter, membrane spanning protein compare
Atu3317 +0.5 3.0 hypothetical protein compare
Atu8195 +0.5 1.0 hypothetical protein compare
Atu3609 +0.5 3.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu4890 +0.5 1.2 IS426 transposase compare
Atu8029 +0.5 1.5 hypothetical protein compare
Atu2041 +0.5 1.7 acetyltransferase compare
Atu4897 +0.5 1.2 hypothetical protein compare
Atu3822 +0.5 2.4 hypothetical protein compare
Atu8093 +0.5 1.9 hypothetical protein compare
Atu3631 +0.5 3.5 hypothetical protein compare
Atu0795 +0.5 1.4 hypothetical protein compare
Atu0051 +0.5 3.0 two component sensor kinase compare
Atu2592 +0.5 3.1 hypothetical protein compare
Atu0819 +0.5 2.1 hypothetical protein compare
Atu4896 +0.5 1.1 acetyltransferase compare
Atu0050 +0.5 3.0 two component response regulator compare
Atu1971 +0.5 1.7 hypothetical protein compare
Atu0904 +0.5 2.4 hypothetical protein compare
Atu2694 +0.5 1.2 hypothetical protein compare
Atu0070 +0.5 2.9 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu2591 +0.5 2.6 glucosyltransferase compare
Atu3032 +0.5 2.1 hypothetical protein compare
Atu2462 +0.5 1.3 hypothetical protein compare
Atu1354 +0.5 1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4730 +0.5 3.2 hypothetical protein compare
Atu4144 +0.5 0.9 hypothetical protein compare
Atu3644 +0.5 2.2 hypothetical protein compare
Atu4893 +0.5 2.0 hypothetical protein compare
Atu0907 +0.5 1.4 Phosphinothricin acetyltransferase compare
Atu2633 +0.5 1.4 RhtB family transporter compare
Atu1333 +0.5 2.0 outer membrane protein compare
Atu4099 +0.5 2.6 hypothetical protein compare
Atu6123 +0.5 2.8 conserved hypothetical protein compare
Atu0185 +0.4 1.5 methylglyoxal synthase compare
Atu4391 +0.4 1.0 nitric oxide reductase NorE protein compare
Atu3588 +0.4 2.3 DNA-3-methyladenine glycosidase II compare
Atu3018 +0.4 1.3 hypothetical protein compare
Atu3909 +0.4 3.6 hypothetical protein compare
Atu3750 +0.4 1.4 thiamine-phosphate pyrophosphorylase compare
Atu8032 +0.4 1.5 hypothetical protein compare
Atu3647 +0.4 1.0 hypothetical protein compare
Atu1387 +0.4 2.2 transcriptional regulator, GntR family compare
Atu1968 +0.4 1.1 hypothetical protein compare
Atu0386 +0.4 1.2 hypothetical protein compare
Atu0477 +0.4 0.8 hypothetical protein compare
Atu6156 +0.4 2.5 virA/G regulated gene compare
Atu0236 +0.4 1.3 hypothetical protein compare
Atu3150 +0.4 2.3 sugar ABC transporter permease compare
Atu1868 +0.4 2.4 tRNA/rRNA methyltransferase compare
Atu3013 +0.4 1.9 hypothetical protein compare
Atu1701 +0.4 1.4 protein-L-isoaspartate O-methyltransferase compare
Atu1041 +0.4 2.5 methyltransferase compare
Atu1837 +0.4 2.6 transcriptional regulator compare
Atu1535 +0.4 1.6 cytochrome c oxidase, FixQ chain compare
Atu3590 +0.4 2.0 transporter compare
Atu5427 +0.4 1.2 hypothetical protein compare
Atu0577 +0.4 1.9 FLAF protein compare
Atu1149 +0.4 1.0 adenylate cyclase compare
Atu0233 +0.4 2.6 lysozyme compare
Atu4162 +0.4 2.7 two-component response regulator compare
Atu3446 +0.4 2.4 monooxygenase compare
Atu3655 +0.4 2.4 antioxidant protein compare
Atu5501 +0.4 0.8 hypothetical protein compare
Atu1026 +0.4 1.5 hypothetical protein compare
Atu3656 +0.4 3.1 acetyltransferase compare
Atu3792 +0.4 2.9 L-asparagine permease compare
Atu0681 +0.4 2.1 hypothetical protein compare
Atu3494 +0.4 2.2 hypothetical protein compare
Atu0674 +0.4 1.9 hypothetical protein compare
Atu3254 +0.4 2.6 dicarboxylate ABC transporter ATPase compare
Atu0948 +0.4 1.4 hypothetical protein compare
Atu1801 +0.4 0.8 hypothetical protein compare
Atu5186 +0.4 1.1 hypothetical protein compare
Atu3015 +0.4 2.2 hypothetical protein compare
Atu1884 +0.4 1.3 ABC transporter, substrate binding protein (aliphatic sulfonate) compare
Atu1558 +0.4 1.5 permease compare
Atu4419 +0.4 2.3 LysR family transcriptional regulator compare
Atu3016 +0.4 1.6 phosphoglyceromutase compare
Atu0273 +0.4 1.9 regulator protein pecM compare
Atu8178 +0.4 2.0 hypothetical protein compare
Atu1470 +0.4 0.6 Camphor resistance protein compare
Atu4160 +0.4 2.5 RNA polymerase sigma factor compare
Atu8140 +0.4 1.8 hypothetical protein compare
Atu5430 +0.4 0.5 hypothetical protein compare
Atu3021 +0.4 2.4 sugar ABC transporter ATPase compare
Atu3327 +0.4 2.1 succinoglycan exopolysaccharide synthesis protein compare
Atu0390 +0.4 1.8 ubiquinone/menaquinone biosynthesis methyltransferase compare
Atu1220 +0.4 2.3 methylated-DNA--protein-cysteine methyltransferase compare
Atu2044 +0.4 1.6 HFLC protein compare
Atu2832 +0.4 1.7 tRNA modification GTPase compare
Atu3890 +0.4 3.1 glycerol kinase compare
Atu3864 +0.4 1.3 hypothetical protein compare
Atu3183 +0.4 0.6 hypothetical protein compare
Atu1871 +0.3 1.7 glutathione S-transferase compare
Atu1827 +0.3 2.2 hypothetical protein compare
Atu1888 +0.3 2.8 two component sensor kinase compare
Atu2456 +0.3 1.0 lactoylglutathione lyase compare
Atu3265 +0.3 1.7 hypothetical protein compare
Atu3182 +0.3 1.5 hypothetical protein compare
Atu8179 +0.3 2.3 hypothetical protein compare
Atu0165 +0.3 1.3 hypothetical protein compare
Atu1349 +0.3 2.1 hypothetical protein compare
Atu2322 +0.3 1.6 hypothetical protein compare
Atu2139 +0.3 2.3 aldehyde dehydrogenase compare
Atu0488 +0.3 1.1 hypothetical protein compare
Atu0947 +0.3 1.2 transcriptional regulator, AsnC family compare
Atu1849 +0.3 2.1 hypothetical protein compare
Atu5108 +0.3 2.1 conjugal transfer coupling protein TraG compare
Atu4290 +0.3 1.7 hypothetical protein compare
Atu4766 +0.3 1.7 hypothetical protein compare
Atu4582 +0.3 1.6 ferredoxin compare
Atu2051 +0.3 1.9 hypothetical protein compare
Atu5196 +0.3 1.1 hypothetical protein compare
Atu1467 +0.3 1.5 hypothetical protein compare
Atu1634 +0.3 0.9 hypothetical protein compare
Atu8036 +0.3 1.1 protein YBGT-like protein compare
Atu4139 +0.3 1.1 hypothetical protein compare
Atu1252 +0.3 0.9 hypothetical protein compare
Atu3421 +0.3 1.8 hypothetical protein compare
Atu1869 +0.3 2.2 hypothetical protein compare
Atu0728 +0.3 1.6 hypothetical protein compare
Atu3448 +0.3 1.5 dibenzothiophene desulfurization protein B compare
Atu0461 +0.3 2.1 hypothetical protein compare
Atu3657 +0.3 1.7 hypothetical protein compare
Atu2034 +0.3 1.6 transcriptional regulator, ArsR family compare
Atu4149 +0.3 2.5 UDP-glucose 6-dehydrogenase compare
Atu3619 +0.3 1.1 hypothetical protein compare
Atu2045 +0.3 1.3 HFLK protein compare
Atu3256 +0.3 2.1 zinc-binding dehydrogenase compare
Atu3160 +0.3 1.6 hypothetical protein compare
Atu4733 +0.3 1.8 hypothetical protein compare
Atu1039 +0.3 1.6 DNA repair protein RecO compare
Atu1232 +0.3 1.1 hypothetical protein compare
Atu1694 +0.3 1.5 hypothetical protein compare
Atu1777 +0.3 1.7 hypothetical protein compare
Atu0446 +0.3 1.3 hypothetical protein compare
Atu5426 +0.3 2.0 hypothetical protein compare
Atu4888 +0.3 1.5 hypothetical protein compare
Atu8046 +0.3 0.8 hypothetical protein compare
Atu1070 +0.3 1.5 hypothetical protein compare
Atu3511 +0.3 1.0 glutaredoxin compare
Atu0580 +0.3 1.1 flagellar biosynthetic protein compare
Atu3757 +0.3 1.0 hypothetical protein compare
Atu0510 +0.3 2.1 pH adaption potassium efflux system protein compare
Atu2349 +0.3 1.0 hypothetical protein compare
Atu1867 +0.3 2.0 glutamate racemase compare
Atu4115 +0.3 1.7 dipeptide ABC transporter permease compare
Atu4112 +0.3 2.2 proline dipeptidase compare
Atu1291 +0.3 1.0 hypothetical protein compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source methyl-beta-D-xylopyranoside in Agrobacterium fabrum C58

For carbon source methyl-beta-D-xylopyranoside across organisms