Experiment set2IT017 for Agrobacterium fabrum C58

Compare to:

Sodium gluconate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1850 -7.3 -5.0 phosphoribosylformylglycinamidine synthetase II compare
Atu2709 -6.7 -11.3 3-isopropylmalate dehydratase, large subunit compare
Atu0486 -6.7 -4.6 dihydroorotate dehydrogenase compare
Atu1140 -6.6 -6.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1687 -6.5 -9.9 anthranilate phosphoribosyltransferase compare
Atu2289 -6.4 -13.7 anthranilate synthase component I and II compare
Atu2264 -6.4 -9.7 2-isopropylmalate synthase compare
Atu1844 -6.2 -4.3 Phosphoribosylformylglycinamidine synthetase compare
Atu2650 -6.2 -11.2 glycerol-3-phosphate dehydrogenase compare
Atu1205 -6.2 -10.3 threonine dehydratase compare
Atu2726 -6.2 -18.3 pyruvate carboxylase compare
Atu3706 -6.1 -6.0 D-3-phosphoglycerate dehydrogenase compare
Atu0679 -6.1 -4.2 ATP phosphoribosyltransferase compare
Atu2036 -6.1 -11.7 acetolactate synthase III, large subunit compare
Atu1308 -5.9 -7.0 aspartate carbamoyl transferase catalytic subunit compare
Atu2040 -5.8 -4.0 phosphoserine phosphatase compare
Atu2718 -5.7 -6.7 homoserine O-succinyltransferase compare
Atu0400 -5.6 -5.5 orotate phosphoribosyltransferase compare
Atu1845 -5.6 -6.6 phosphoribosylformylglycinamidine synthase I compare
Atu1750 -5.6 -5.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu0298 -5.5 -6.6 orotidine 5 compare
Atu3707 -5.5 -3.8 phosphoserine aminotransferase compare
Atu0399 -5.5 -3.8 dihydroorotase compare
Atu1688 -5.5 -3.8 indole-3-glycerol-phosphate synthase compare
Atu0537 -5.4 -3.8 histidinol dehydrogenase compare
Atu3885 -5.3 -7.3 inositol monophosphatase compare
Atu0678 -5.3 -3.7 histidyl-tRNA synthetase compare
Atu2791 -5.3 -8.8 3-isopropylmalate dehydrogenase compare
Atu3754 -5.1 -7.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0017 -5.1 -3.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3483 -5.0 -6.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0432 -4.9 -10.0 O-succinylhomoserine sulfhydrylase compare
Atu1075 -4.9 -8.1 amidophosphoribosyltransferase compare
Atu2790 -4.7 -2.8 3-isopropylmalate dehydratase, small subunit compare
Atu1588 -4.7 -10.0 homoserine dehydrogenase compare
Atu3755 -4.6 -6.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0099 -4.5 -8.9 prephenate dehydratase compare
Atu1307 -4.4 -7.3 dihydroorotase compare
Atu1141 -4.3 -6.5 Phosphoribosylglycinamide synthetase compare
Atu0038 -4.2 -5.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0043 -4.2 -2.9 imidazoleglycerol-phosphate dehydratase compare
Atu0041 -4.1 -2.8 glutamine amidotransferase compare
Atu3482 -4.1 -8.9 pantoate--beta-alanine ligase compare
Atu1030 -4.0 -2.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0039 -4.0 -2.8 imidazoleglycerol-phosphate synthase cyclase compare
Atu3783 -3.9 -14.0 glutamate synthase subunit beta compare
Atu3739 -3.6 -4.3 phosphoglycerate kinase compare
Atu2015 -3.6 -16.0 aminotransferase compare
Atu2747 -3.5 -12.9 hypothetical protein compare
Atu0647 -3.5 -7.0 phosphoribosylamine--glycine ligase compare
Atu2708 -3.4 -9.1 MFS permease compare
Atu3784 -3.3 -21.5 glutamate synthase large subunit compare
Atu0641 -2.7 -5.0 hypothetical protein compare
Atu0723 -2.4 -1.7 FAD dependent oxidoreductase compare
Atu0040 -2.3 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1604 -2.3 -11.8 poly-beta-hydroxybutyrate synthase compare
Atu2770 -2.1 -5.9 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu2155 -2.0 -13.5 methionine synthase compare
Atu4711 -1.8 -7.6 two component sensor kinase compare
Atu0421 -1.8 -2.0 ABC transporter, membrane spanning protein compare
Atu0188 -1.8 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1686 -1.8 -10.7 peptidyl-prolyl cis-trans isomerse D compare
Atu2684 -1.8 -2.1 hypothetical protein compare
Atu0769 -1.7 -1.8 protoheme IX farnesyltransferase compare
Atu0434 -1.7 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4773 -1.7 -2.4 two component response regulator compare
Atu1028 -1.6 -3.0 hypothetical protein compare
Atu1589 -1.6 -4.8 aminotransferase, class I compare
Atu5115 -1.6 -1.8 hypothetical protein compare
Atu0986 -1.6 -1.6 hypothetical protein compare
Atu3730 -1.5 -1.9 hypothetical protein compare
Atu4616 -1.5 -2.4 dTDP-4-dehydrorhamnose reductase compare
Atu5540 -1.4 -1.1 hypothetical protein compare
Atu5470 -1.4 -2.8 hypothetical protein compare
Atu0141 -1.3 -2.0 cytochrome O ubiquinol oxidase subunit I compare
Atu4098 -1.3 -7.9 quinolinate synthetase compare
Atu0895 -1.3 -2.8 ABC transporter, substrate binding protein compare
Atu3468 -1.2 -1.2 hypothetical protein compare
Atu3997 -1.2 -8.2 biotin synthetase compare
Atu3731 -1.2 -4.8 5-formyltetrahydrofolate cyclo-ligase compare
Atu4096 -1.1 -5.1 nicotinate-nucleotide pyrophosphorylase compare
Atu1572 -1.1 -6.4 hydrolase compare
Atu4702 -1.1 -5.2 GntR family transcriptional regulator compare
Atu3712 -1.1 -1.9 hypothetical protein compare
Atu1456 -1.1 -5.6 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0422 -1.1 -1.9 ABC transporter, membrane spanning protein compare
Atu3598 -1.0 -1.9 thiol:disulfide interchange protein compare
Atu2484 -1.0 -1.5 hypothetical protein compare
Atu3289 -1.0 -4.0 thiamine-phosphate pyrophosphorylase compare
Atu3120 -1.0 -1.3 hypothetical protein compare
Atu1685 -1.0 -1.1 hypothetical protein compare
Atu4674 -1.0 -5.9 GntR family transcriptional regulator compare
Atu1810 -1.0 -1.3 hypothetical protein compare
Atu2125 -1.0 -2.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0062 -1.0 -4.6 transcriptional regulator, ROK family compare
Atu1454 -1.0 -5.0 siroheme synthase compare
Atu0598 -1.0 -4.5 phosphogluconate dehydratase compare
Atu3763 -1.0 -1.4 hypothetical protein compare
Atu3342 -1.0 -4.2 trehalose utilization-like protein compare
Atu0119 -0.9 -1.1 hypothetical protein compare
Atu3343 -0.9 -4.4 trehalose utilization-like protein compare
Atu0876 -0.9 -1.0 superoxide dismutase compare
Atu2787 -0.9 -1.1 hypothetical protein compare
Atu2569 -0.9 -5.4 thiamine biosynthesis protein compare
Atu1701 -0.8 -1.7 protein-L-isoaspartate O-methyltransferase compare
Atu5173 -0.8 -1.8 dehydrogenase compare
Atu0660 -0.8 -3.4 hydrolase compare
Atu0142 -0.8 -2.2 cytochrome o ubiquinol oxidase subunit II compare
Atu1774 -0.8 -5.1 ABC transporter, substrate binding protein (peptide) compare
Atu1714 -0.8 -1.4 exonuclease III compare
Atu5057 -0.8 -1.4 hypothetical protein compare
Atu3908 -0.8 -4.7 GntR family transcriptional regulator compare
Atu3469 -0.8 -1.4 phosphoglyceromutase compare
Atu8088 -0.8 -1.7 hypothetical protein compare
Atu0977 -0.8 -2.3 serine protease DO-like protease compare
Atu3290 -0.8 -4.1 phosphomethylpyrimidine kinase compare
Atu4217 -0.8 -1.4 TetR family transcriptional regulator compare
Atu2352 -0.7 -1.7 hypothetical protein compare
Atu2548 -0.7 -5.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1364 -0.7 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2821 -0.7 -3.4 transcriptional regulator, GntR family compare
Atu3288 -0.7 -4.0 hydroxyethylthiazole kinase compare
Atu1286 -0.7 -2.8 hypothetical protein compare
Atu2710 -0.7 -3.5 hypothetical protein compare
Atu0842 -0.7 -1.4 hypothetical protein compare
Atu2532 -0.7 -2.2 transcriptional regulator, MarR family compare
Atu0981 -0.7 -5.3 glutamate-ammonia-ligase adenylyltransferase compare
Atu0565 -0.7 -2.5 hypothetical protein compare
Atu1699 -0.7 -2.3 molybdopterin-guanine dinucleotide biosynthesis protein B compare
Atu1455 -0.7 -1.8 hypothetical protein compare
Atu3075 -0.7 -3.7 TetR family transcriptional regulator compare
Atu2192 -0.7 -1.1 hypothetical protein compare
Atu4364 -0.7 -3.8 LacI family transcriptional regulator compare
Atu3337 -0.7 -4.3 LacI family transcriptional regulator compare
Atu4232 -0.7 -2.5 GntR family transcriptional regulator compare
Atu1446 -0.7 -1.1 two component response regulator compare
Atu2633 -0.7 -1.5 RhtB family transporter compare
Atu3083 -0.7 -3.9 hypothetical protein compare
Atu2333 -0.7 -3.4 ATP-dependent RNA helicase compare
Atu0538 -0.7 -2.2 hypothetical protein compare
Atu4446 -0.7 -4.4 hypothetical protein compare
Atu0744 -0.7 -2.4 hypothetical protein compare
Atu6133 -0.7 -1.8 conserved hypothetical protein compare
Atu6114 -0.7 -1.1 hypothetical protein compare
Atu3144 -0.6 -2.7 GntR family transcriptional regulator compare
Atu2282 -0.6 -2.2 thymidine kinase compare
Atu5125 -0.6 -1.9 GntR family transcriptional regulator compare
Atu8034 -0.6 -2.4 hypothetical protein compare
Atu2376 -0.6 -0.5 hypothetical protein compare
Atu1445 -0.6 -2.1 two component sensor kinase compare
Atu4317 -0.6 -2.3 TetR family transcriptional regulator compare
Atu8138 -0.6 -0.8 hypothetical protein compare
Atu2578 -0.6 -2.5 cAMP-dependent protein kinase regulatory subunit compare
Atu3496 -0.6 -1.2 hypothetical protein compare
Atu6120 -0.6 -2.2 HNS-type DNA binding protein compare
Atu5517 -0.6 -1.2 hypothetical protein compare
Atu0762 -0.6 -1.8 hypothetical protein compare
Atu3667 -0.6 -1.7 aspartate alpha-decarboxylase compare
Atu4029 -0.6 -3.1 gluconolactonase compare
Atu0095 -0.6 -2.7 hypothetical protein compare
Atu2239 -0.6 -1.7 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1793 -0.6 -3.2 phosphatidylcholine synthase compare
Atu0590 -0.6 -2.8 transcriptional regulator repressor compare
Atu1739 -0.6 -2.4 permease compare
Atu1339 -0.6 -1.8 ribonuclease E compare
Atu0687 -0.6 -1.0 hypothetical protein compare
Atu3561 -0.6 -1.6 hypothetical protein compare
Atu6156 -0.6 -1.8 virA/G regulated gene compare
Atu5163 -0.6 -1.5 type IV secretion protein AvhB2 compare
Atu0770 -0.6 -2.2 cytochrome C oxidase assembly protein compare
Atu3115 -0.5 -2.2 TetR family transcriptional regulator compare
Atu4556 -0.5 -3.6 LacI family transcriptional regulator compare
Atu1851 -0.5 -1.6 BolA/YrbA family protein compare
Atu4824 -0.5 -3.8 IclR family transcriptional regulator compare
Atu3963 -0.5 -3.0 GntR family transcriptional regulator compare
Atu0845 -0.5 -1.7 hypothetical protein compare
Atu0101 -0.5 -1.9 cytochrome c compare
Atu4050 -0.5 -2.0 UTP-glucose-1-phosphate uridylyltransferase compare
Atu0791 -0.5 -2.4 transcriptional regulator, GntR family compare
Atu1812 -0.5 -2.6 hypothetical protein compare
Atu3698 -0.5 -2.1 thioredoxin compare
Atu1125 -0.5 -2.0 ABC transporter, membrane spanning protein compare
Atu4346 -0.5 -2.5 hypothetical protein compare
Atu1619 -0.5 -1.3 protein-export membrane protein SECG compare
Atu1789 -0.5 -2.9 lipoprotein compare
Atu2200 -0.5 -1.3 cold shock protein compare
Atu3898 -0.5 -2.5 DeoR family transcriptional regulator compare
Atu1285 -0.5 -1.8 metal dependent hydrolase compare
Atu3727 -0.5 -2.3 hypothetical protein compare
Atu2201 -0.5 -1.0 hydrolase compare
Atu4825 -0.5 -2.6 dehydrogenase compare
Atu0886 -0.5 -0.8 hypothetical protein compare
Atu4541 -0.5 -2.2 carboxymuconolactone decarboxylase compare
Atu3491 -0.5 -1.5 hypothetical protein compare
Atu0189 -0.5 -1.2 ABC transporter, membrane spanning protein (peptide) compare
Atu8046 -0.5 -1.3 hypothetical protein compare
Atu0332 -0.5 -3.2 RNA polymerase sigma-54 factor compare
Atu1149 -0.5 -0.9 adenylate cyclase compare
Atu0030 -0.5 -0.8 phosphocarrier protein HPr compare
Atu2682 -0.5 -2.2 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Agrobacterium fabrum C58

For carbon source D-Gluconic Acid sodium salt across organisms