Experiment set2IT016 for Pseudomonas sp. RS175

Compare to:

sn-glycero-3-phosphocholine carbon source 10 mM

200 most important genes:

  gene name fitness t score description  
PFR28_03860 -6.8 -4.7 putative murein peptide carboxypeptidase compare
PFR28_05244 -5.9 -19.3 Copper-exporting P-type ATPase compare
PFR28_04146 -5.8 -10.5 hypothetical protein compare
PFR28_02823 -5.4 -3.3 3-isopropylmalate dehydratase small subunit 1 compare
PFR28_02824 -5.4 -8.2 3-isopropylmalate dehydratase large subunit compare
PFR28_04133 -5.2 -10.9 Sarcosine oxidase subunit delta compare
PFR28_04148 -5.2 -12.0 hypothetical protein compare
PFR28_03714 -5.2 -18.2 RNA polymerase-binding transcription factor DksA compare
PFR28_05016 -5.1 -18.4 Glutamate synthase [NADPH] small chain compare
PFR28_04147 -5.1 -15.5 putative N-methylproline demethylase compare
PFR28_04149 -5.1 -10.4 hypothetical protein compare
PFR28_04071 -5.0 -1.8 Multifunctional CCA protein compare
PFR28_05015 -5.0 -30.2 Glutamate synthase [NADPH] large chain compare
PFR28_01365 -4.9 -7.5 hypothetical protein compare
PFR28_02821 -4.9 -21.8 3-isopropylmalate dehydrogenase compare
PFR28_04145 -4.9 -9.5 Protein FixB compare
PFR28_04131 -4.8 -9.1 Sarcosine oxidase subunit gamma compare
PFR28_02811 -4.8 -4.7 Amidophosphoribosyltransferase compare
PFR28_04929 -4.8 -8.6 Histidine biosynthesis bifunctional protein HisB compare
PFR28_04134 -4.8 -15.3 Sarcosine oxidase subunit beta compare
PFR28_03697 -4.8 -18.5 Ketol-acid reductoisomerase (NADP(+)) compare
PFR28_04932 -4.8 -8.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PFR28_03699 -4.7 -7.2 Acetolactate synthase isozyme 3 large subunit compare
PFR28_04165 -4.6 -11.9 Vitamin B12 import ATP-binding protein BtuD compare
PFR28_04834 -4.5 -21.4 L-threonine dehydratase biosynthetic IlvA compare
PFR28_04930 -4.4 -11.7 Imidazole glycerol phosphate synthase subunit HisH compare
PFR28_00187 -4.4 -17.3 Histidinol dehydrogenase compare
PFR28_04132 -4.4 -25.2 Sarcosine oxidase subunit alpha compare
PFR28_04140 -4.3 -17.2 Carnitine monooxygenase oxygenase subunit compare
PFR28_01366 -4.3 -12.6 Sulfite reductase [ferredoxin] compare
PFR28_04144 -4.2 -5.8 hypothetical protein compare
PFR28_04832 -4.1 -16.3 putative phosphatase compare
PFR28_02603 -4.0 -10.3 Siroheme synthase compare
PFR28_04278 -4.0 -14.8 Dihydroxy-acid dehydratase compare
PFR28_04139 -3.9 -12.7 3-ketosteroid-9-alpha-monooxygenase, ferredoxin reductase component compare
PFR28_00188 -3.9 -14.9 Histidinol-phosphate aminotransferase compare
PFR28_02608 -3.9 -4.1 DNA translocase FtsK compare
PFR28_03217 -3.8 -2.6 Phosphoribosylformylglycinamidine cyclo-ligase compare
PFR28_04933 -3.7 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PFR28_04161 -3.7 -10.4 HTH-type transcriptional regulator CdhR compare
PFR28_04135 -3.6 -11.0 Serine hydroxymethyltransferase compare
PFR28_04246 -3.6 -11.8 Bifunctional methionine biosynthesis protein MetXA/MetW compare
PFR28_04985 -3.6 -7.6 Phosphoribosyl-ATP pyrophosphatase compare
PFR28_04986 -3.6 -8.0 Phosphoribosyl-AMP cyclohydrolase compare
PFR28_00305 -3.5 -8.3 2-isopropylmalate synthase compare
PFR28_04245 -3.5 -15.2 Homoserine O-succinyltransferase compare
PFR28_01930 -3.4 -5.6 HTH-type transcriptional regulator McbR compare
PFR28_04168 -3.4 -15.0 Oxygen-dependent choline dehydrogenase conserved
PFR28_04164 -3.4 -10.8 Glycine betaine transport system permease protein OpuAB compare
PFR28_03363 -3.4 -17.5 Ornithine carbamoyltransferase 1, anabolic compare
PFR28_03718 -3.3 -6.6 Transcriptional regulatory protein ZraR compare
PFR28_05125 -3.2 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
PFR28_03223 -3.2 -16.0 GTP pyrophosphokinase compare
PFR28_04202 -3.1 -9.0 5,10-methylenetetrahydrofolate reductase compare
PFR28_04308 -3.1 -5.8 Amino-acid acetyltransferase compare
PFR28_02810 -3.1 -15.0 O-succinylhomoserine sulfhydrylase compare
PFR28_05067 -3.1 -4.6 hypothetical protein compare
PFR28_00186 -2.9 -6.6 ATP phosphoribosyltransferase compare
PFR28_03698 -2.9 -11.3 Acetolactate synthase isozyme 3 small subunit compare
PFR28_04163 -2.9 -12.8 hypothetical protein compare
PFR28_05212 -2.7 -12.9 Sensor histidine kinase RcsC compare
PFR28_00926 -2.7 -3.5 hypothetical protein compare
PFR28_03412 -2.6 -6.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PFR28_04958 -2.4 -2.8 hypothetical protein compare
PFR28_04103 -2.4 -10.3 Biotin synthase compare
PFR28_04489 -2.4 -12.1 Phosphate-binding protein PstS compare
PFR28_05078 -2.4 -3.1 hypothetical protein compare
PFR28_04333 -2.3 -14.6 Glycerol-3-phosphate transporter conserved
PFR28_01460 -2.3 -1.4 Glutamine transport ATP-binding protein GlnQ compare
PFR28_03596 -2.3 -2.6 Transcriptional regulator MraZ compare
PFR28_04487 -2.2 -9.2 hypothetical protein compare
PFR28_00966 -2.2 -13.9 HTH-type transcriptional regulator CysB compare
PFR28_04488 -2.2 -15.5 hypothetical protein compare
PFR28_04167 -2.2 -7.1 NAD/NADP-dependent betaine aldehyde dehydrogenase conserved
PFR28_04425 -2.2 -9.4 2-iminobutanoate/2-iminopropanoate deaminase compare
PFR28_04486 -2.2 -11.2 Phosphate import ATP-binding protein PstB compare
PFR28_05071 -2.2 -4.2 D-inositol-3-phosphate glycosyltransferase compare
PFR28_05139 -2.2 -2.7 hypothetical protein compare
PFR28_01156 -2.1 -6.5 hypothetical protein compare
PFR28_04842 -2.0 -6.4 D-3-phosphoglycerate dehydrogenase compare
PFR28_03414 -1.9 -3.7 Crossover junction endodeoxyribonuclease RuvC compare
PFR28_01410 -1.9 -9.0 Response regulator GacA compare
PFR28_04030 -1.9 -13.4 hypothetical protein compare
PFR28_04344 -1.9 -5.6 Exopolyphosphatase compare
PFR28_04517 -1.8 -11.0 Oxaloacetate decarboxylase alpha chain compare
PFR28_03413 -1.8 -4.9 Holliday junction ATP-dependent DNA helicase RuvA compare
PFR28_01113 -1.8 -5.4 DNA topoisomerase 1 compare
PFR28_04436 -1.8 -7.0 hypothetical protein compare
PFR28_03227 -1.8 -10.7 Signal transduction histidine-protein kinase BarA compare
PFR28_00194 -1.7 -9.7 Bifunctional enzyme CysN/CysC compare
PFR28_03151 -1.7 -2.1 Septum site-determining protein MinC compare
PFR28_04518 -1.7 -10.9 2-oxoglutarate carboxylase small subunit compare
PFR28_00098 -1.7 -8.0 Nicotinate-nucleotide pyrophosphorylase [carboxylating] compare
PFR28_04633 -1.7 -5.1 Alginate biosynthesis sensor protein KinB compare
PFR28_03303 -1.7 -8.8 Glycerophosphodiester phosphodiesterase conserved
PFR28_00873 -1.7 -6.7 hypothetical protein compare
PFR28_02484 -1.7 -10.2 UTP--glucose-1-phosphate uridylyltransferase compare
PFR28_03388 -1.7 -9.6 Quinolinate synthase A compare
PFR28_00159 -1.6 -10.4 hypothetical protein compare
PFR28_03664 -1.6 -3.5 Ribosome-binding ATPase YchF compare
PFR28_00688 -1.6 -1.9 hypothetical protein compare
PFR28_04992 -1.6 -1.7 hypothetical protein compare
PFR28_01142 -1.6 -10.5 Transaldolase compare
PFR28_03130 -1.5 -4.0 Streptothricin hydrolase compare
PFR28_04565 -1.5 -9.6 Protein RarD compare
PFR28_03282 -1.5 -5.2 Arginine N-succinyltransferase subunit alpha compare
PFR28_00193 -1.4 -8.9 Sulfate adenylyltransferase subunit 2 compare
PFR28_03721 -1.4 -5.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFR28_01134 -1.4 -2.1 Transcriptional activator protein CopR compare
PFR28_04059 -1.4 -10.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase compare
PFR28_03551 -1.4 -5.1 Cyclic pyranopterin monophosphate synthase compare
PFR28_02507 -1.4 -2.0 Phosphoglycolate phosphatase compare
PFR28_03304 -1.4 -1.2 hypothetical protein compare
PFR28_04675 -1.3 -2.6 hypothetical protein compare
PFR28_02403 -1.3 -1.2 Na(+)/H(+) antiporter subunit C1 compare
PFR28_04902 -1.3 -6.0 Inner membrane protein YgaZ compare
PFR28_04377 -1.3 -6.7 hypothetical protein compare
PFR28_00839 -1.3 -5.1 hypothetical protein compare
PFR28_04865 -1.3 -5.9 Glutamate--cysteine ligase compare
PFR28_04585 -1.3 -5.4 Chromosome partitioning protein ParA compare
PFR28_00325 -1.3 -3.5 Inner membrane protein YpjD compare
PFR28_04903 -1.3 -5.1 hypothetical protein compare
PFR28_00472 -1.3 -3.4 Protein RecA compare
PFR28_03169 -1.3 -7.9 Tail-specific protease compare
PFR28_04485 -1.2 -2.6 Phosphate-specific transport system accessory protein PhoU compare
PFR28_01265 -1.2 -6.3 (R)-benzylsuccinyl-CoA dehydrogenase compare
PFR28_03000 -1.2 -6.0 'GTP 3',8-cyclase' transl_table=11 compare
PFR28_01004 -1.2 -5.3 Molybdenum cofactor guanylyltransferase compare
PFR28_00425 -1.2 -8.3 Protein-L-isoaspartate O-methyltransferase compare
PFR28_01876 -1.2 -1.5 hypothetical protein compare
PFR28_02613 -1.2 -7.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
PFR28_01661 -1.2 -1.5 Delta(1)-pyrroline-2-carboxylate/Delta(1)- piperideine-2-carboxylate reductase compare
PFR28_04519 -1.1 -4.9 HTH-type transcriptional activator CmpR compare
PFR28_00693 -1.1 -4.4 Periplasmic serine endoprotease DegP compare
PFR28_01154 -1.1 -2.1 hypothetical protein compare
PFR28_02255 -1.1 -5.4 Toluene efflux pump outer membrane protein TtgC compare
PFR28_00695 -1.1 -1.4 Sulfur carrier protein TusA compare
PFR28_00271 -1.1 -3.7 hypothetical protein compare
PFR28_01250 -1.1 -6.6 hypothetical protein compare
PFR28_04110 -1.1 -7.7 Malate synthase G compare
PFR28_04944 -1.1 -4.9 DNA-binding transcriptional regulator NtrC compare
PFR28_00403 -1.1 -3.7 Regulator of sigma-E protease RseP compare
PFR28_03182 -1.1 -3.1 Recombination-associated protein RdgC compare
PFR28_03625 -1.0 -7.7 Metalloprotease LoiP compare
PFR28_04882 -1.0 -7.1 Sulfur carrier protein FdhD compare
PFR28_00331 -1.0 -2.8 Tyrosine recombinase XerD compare
PFR28_01006 -1.0 -4.0 Molybdopterin molybdenumtransferase compare
PFR28_04031 -1.0 -7.6 Anhydro-N-acetylmuramic acid kinase compare
PFR28_01060 -1.0 -5.0 HTH-type transcriptional repressor NanR compare
PFR28_01005 -1.0 -4.0 Molybdenum cofactor biosynthesis protein B compare
PFR28_04232 -1.0 -4.0 Glutathione synthetase compare
PFR28_04566 -1.0 -6.4 4-chloro-allylglycine synthase compare
PFR28_04060 -1.0 -7.0 N-acetylmuramate/N-acetylglucosamine kinase compare
PFR28_01043 -1.0 -2.9 hypothetical protein compare
PFR28_03427 -1.0 -4.4 Sensor histidine kinase RcsC compare
PFR28_05006 -0.9 -8.6 Penicillin-binding protein 1A compare
PFR28_04607 -0.9 -1.4 Organic hydroperoxide resistance protein OhrB compare
PFR28_03716 -0.9 -4.6 hypothetical protein compare
PFR28_00988 -0.9 -5.3 Sensor histidine kinase RcsC compare
PFR28_03883 -0.9 -3.8 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl- meso-2,6-diaminoheptandioate ligase compare
PFR28_02625 -0.9 -4.7 Isocitrate lyase compare
PFR28_04262 -0.9 -3.3 Ribosomal RNA small subunit methyltransferase D compare
PFR28_00928 -0.9 -2.5 putative sugar transferase EpsL compare
PFR28_00990 -0.9 -1.3 Free methionine-R-sulfoxide reductase compare
PFR28_00900 -0.9 -3.5 N-acetylmuramic acid 6-phosphate phosphatase compare
PFR28_00980 -0.9 -1.3 ATP-dependent RNA helicase DeaD compare
PFR28_01114 -0.9 -4.3 hypothetical protein compare
PFR28_03387 -0.9 -1.3 hypothetical protein compare
PFR28_03666 -0.9 -1.4 hypothetical protein compare
PFR28_00689 -0.9 -7.2 L-aspartate oxidase compare
PFR28_01003 -0.9 -3.2 hypothetical protein compare
PFR28_03463 -0.9 -1.7 hypothetical protein compare
PFR28_03615 -0.9 -3.3 hypothetical protein compare
PFR28_03856 -0.9 -2.4 LPS-assembly lipoprotein LptE compare
PFR28_00196 -0.9 -4.8 Phosphate acetyltransferase compare
PFR28_02616 -0.9 -6.7 Isocitrate dehydrogenase [NADP] compare
PFR28_01380 -0.9 -4.3 hypothetical protein compare
PFR28_00424 -0.8 -3.7 '5'-nucleotidase SurE' transl_table=11 compare
PFR28_03322 -0.8 -2.1 hypothetical protein compare
PFR28_04072 -0.8 -2.2 Bifunctional folate synthesis protein compare
PFR28_03627 -0.8 -1.9 SOS response-associated protein YedK compare
PFR28_04712 -0.8 -1.2 Dodecin compare
PFR28_04100 -0.8 -4.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PFR28_02444 -0.8 -1.8 Leucine-responsive regulatory protein compare
PFR28_04378 -0.8 -3.2 Tyrosine recombinase XerC compare
PFR28_00633 -0.8 -6.5 HTH-type transcriptional regulator TtgR compare
PFR28_01084 -0.8 -3.3 hypothetical protein compare
PFR28_00903 -0.8 -4.0 Methylthioribose-1-phosphate isomerase compare
PFR28_04480 -0.8 -5.0 Phosphate regulon sensor protein PhoR compare
PFR28_02111 -0.8 -2.3 hypothetical protein compare
PFR28_05144 -0.8 -1.9 hypothetical protein compare
PFR28_02254 -0.8 -4.1 Multidrug resistance protein MdtA compare
PFR28_02253 -0.8 -5.9 Multidrug resistance protein MdtC compare
PFR28_04782 -0.8 -6.1 hypothetical protein compare
PFR28_02127 -0.8 -1.0 hypothetical protein compare
PFR28_03390 -0.8 -5.0 Copper resistance protein B compare
PFR28_02703 -0.8 -0.9 hypothetical protein compare
PFR28_04162 -0.8 -4.9 L-serine dehydratase TdcG compare
PFR28_02232 -0.8 -0.8 hypothetical protein compare
PFR28_02510 -0.8 -1.1 Chemotaxis protein CheY compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source sn-glycero-3-phosphocholine in Pseudomonas sp. RS175

For carbon source sn-glycero-3-phosphocholine across organisms