Experiment set2IT016 for Agrobacterium fabrum C58

Compare to:

Sodium gluconate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1687 -7.1 -6.9 anthranilate phosphoribosyltransferase compare
Atu0038 -7.0 -4.8 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2791 -6.9 -4.8 3-isopropylmalate dehydrogenase compare
Atu0486 -6.6 -4.6 dihydroorotate dehydrogenase compare
Atu2264 -6.5 -8.9 2-isopropylmalate synthase compare
Atu1307 -6.4 -5.8 dihydroorotase compare
Atu2289 -6.3 -13.4 anthranilate synthase component I and II compare
Atu1205 -6.2 -9.5 threonine dehydratase compare
Atu2709 -6.2 -14.5 3-isopropylmalate dehydratase, large subunit compare
Atu1844 -6.1 -4.2 Phosphoribosylformylglycinamidine synthetase compare
Atu0679 -6.0 -4.1 ATP phosphoribosyltransferase compare
Atu1308 -5.9 -7.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1850 -5.9 -5.7 phosphoribosylformylglycinamidine synthetase II compare
Atu1140 -5.9 -6.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2036 -5.9 -13.1 acetolactate synthase III, large subunit compare
Atu0099 -5.9 -10.6 prephenate dehydratase compare
Atu3482 -5.8 -10.4 pantoate--beta-alanine ligase compare
Atu2040 -5.7 -3.9 phosphoserine phosphatase compare
Atu2726 -5.7 -19.1 pyruvate carboxylase compare
Atu3885 -5.6 -6.7 inositol monophosphatase compare
Atu3706 -5.6 -7.7 D-3-phosphoglycerate dehydrogenase compare
Atu2650 -5.6 -11.3 glycerol-3-phosphate dehydrogenase compare
Atu2718 -5.4 -7.4 homoserine O-succinyltransferase compare
Atu3707 -5.4 -3.7 phosphoserine aminotransferase compare
Atu1688 -5.3 -3.7 indole-3-glycerol-phosphate synthase compare
Atu1750 -5.2 -5.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu0678 -5.2 -3.6 histidyl-tRNA synthetase compare
Atu0400 -5.1 -6.1 orotate phosphoribosyltransferase compare
Atu0537 -5.1 -5.0 histidinol dehydrogenase compare
Atu3754 -5.1 -7.1 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0399 -5.0 -5.9 dihydroorotase compare
Atu0017 -5.0 -3.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0432 -4.9 -7.8 O-succinylhomoserine sulfhydrylase compare
Atu0298 -4.8 -8.0 orotidine 5 compare
Atu1075 -4.7 -7.2 amidophosphoribosyltransferase compare
Atu1845 -4.7 -5.8 phosphoribosylformylglycinamidine synthase I compare
Atu3483 -4.5 -8.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu0647 -4.5 -5.4 phosphoribosylamine--glycine ligase compare
Atu1141 -4.5 -7.3 Phosphoribosylglycinamide synthetase compare
Atu3755 -4.4 -6.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1588 -4.3 -10.7 homoserine dehydrogenase compare
Atu0043 -4.1 -2.8 imidazoleglycerol-phosphate dehydratase compare
Atu0041 -4.0 -2.7 glutamine amidotransferase compare
Atu2708 -3.8 -9.7 MFS permease compare
Atu3783 -3.6 -13.7 glutamate synthase subunit beta compare
Atu2747 -3.4 -11.3 hypothetical protein compare
Atu3784 -3.3 -22.3 glutamate synthase large subunit compare
Atu0769 -3.3 -3.2 protoheme IX farnesyltransferase compare
Atu0039 -3.2 -3.1 imidazoleglycerol-phosphate synthase cyclase compare
Atu2015 -3.1 -12.8 aminotransferase compare
Atu3739 -3.0 -4.1 phosphoglycerate kinase compare
Atu2790 -2.7 -2.7 3-isopropylmalate dehydratase, small subunit compare
Atu0421 -2.3 -2.2 ABC transporter, membrane spanning protein compare
Atu0040 -2.3 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1604 -2.3 -12.8 poly-beta-hydroxybutyrate synthase compare
Atu0641 -2.1 -4.6 hypothetical protein compare
Atu1589 -2.0 -6.9 aminotransferase, class I compare
Atu2770 -2.0 -5.4 acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis compare
Atu1686 -2.0 -11.7 peptidyl-prolyl cis-trans isomerse D compare
Atu2155 -1.9 -12.7 methionine synthase compare
Atu0723 -1.9 -1.8 FAD dependent oxidoreductase compare
Atu1685 -1.8 -1.5 hypothetical protein compare
Atu4616 -1.6 -2.6 dTDP-4-dehydrorhamnose reductase compare
Atu4096 -1.6 -8.7 nicotinate-nucleotide pyrophosphorylase compare
Atu5125 -1.5 -3.6 GntR family transcriptional regulator compare
Atu4711 -1.4 -6.5 two component sensor kinase compare
Atu1030 -1.3 -0.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4702 -1.3 -6.7 GntR family transcriptional regulator compare
Atu2484 -1.3 -1.9 hypothetical protein compare
Atu4098 -1.3 -9.1 quinolinate synthetase compare
Atu5540 -1.3 -0.9 hypothetical protein compare
Atu0434 -1.3 -2.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0189 -1.2 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu4674 -1.2 -8.8 GntR family transcriptional regulator compare
Atu3343 -1.2 -6.3 trehalose utilization-like protein compare
Atu1455 -1.2 -2.9 hypothetical protein compare
Atu3731 -1.2 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
Atu0086 -1.2 -1.2 ribosome-binding factor A compare
Atu0422 -1.2 -1.5 ABC transporter, membrane spanning protein compare
Atu1904 -1.2 -2.5 transcriptional regulator compare
Atu1446 -1.1 -2.3 two component response regulator compare
Atu0598 -1.1 -5.2 phosphogluconate dehydratase compare
Atu1454 -1.1 -5.2 siroheme synthase compare
Atu3997 -1.1 -7.0 biotin synthetase compare
Atu0361 -1.1 -2.4 transcriptional regulator compare
Atu1456 -1.0 -5.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu3290 -1.0 -5.6 phosphomethylpyrimidine kinase compare
Atu0201 -1.0 -2.1 hypothetical protein compare
Atu3730 -1.0 -1.0 hypothetical protein compare
Atu2193 -1.0 -1.0 hypothetical protein compare
Atu1457 -1.0 -1.6 hypothetical protein compare
Atu4514 -1.0 -2.9 RpiR family transcriptional regulator compare
Atu5430 -1.0 -0.9 hypothetical protein compare
Atu0876 -1.0 -1.9 superoxide dismutase compare
Atu3469 -1.0 -2.3 phosphoglyceromutase compare
Atu4144 -1.0 -1.2 hypothetical protein compare
Atu1286 -0.9 -3.2 hypothetical protein compare
Atu0142 -0.9 -2.9 cytochrome o ubiquinol oxidase subunit II compare
Atu0749 -0.9 -2.1 biotin synthesis BioY protein compare
Atu2376 -0.9 -0.7 hypothetical protein compare
Atu1182 -0.9 -1.6 hypothetical protein compare
Atu3342 -0.9 -3.6 trehalose utilization-like protein compare
Atu2821 -0.9 -4.0 transcriptional regulator, GntR family compare
Atu4773 -0.9 -1.8 two component response regulator compare
Atu3763 -0.9 -1.3 hypothetical protein compare
Atu1225 -0.9 -1.3 hypothetical protein compare
Atu2249 -0.9 -1.0 hypothetical protein compare
Atu1028 -0.8 -1.4 hypothetical protein compare
Atu2569 -0.8 -5.5 thiamine biosynthesis protein compare
Atu4217 -0.8 -1.2 TetR family transcriptional regulator compare
Atu0062 -0.8 -4.7 transcriptional regulator, ROK family compare
Atu1774 -0.8 -4.2 ABC transporter, substrate binding protein (peptide) compare
Atu1572 -0.8 -3.8 hydrolase compare
Atu6159 -0.8 -2.1 hypothetical protein compare
Atu0955 -0.8 -2.0 hypothetical protein compare
Atu0026 -0.8 -0.7 hypothetical protein compare
Atu4317 -0.8 -2.4 TetR family transcriptional regulator compare
Atu2762 -0.8 -2.5 hypothetical protein compare
Atu4053 -0.8 -1.4 succinoglycan biosynthesis protein compare
Atu0280 -0.8 -1.6 hypothetical protein compare
Atu2548 -0.8 -6.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0190 -0.8 -3.1 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu3963 -0.8 -3.8 GntR family transcriptional regulator compare
Atu1737 -0.8 -2.2 hypothetical protein compare
Atu1149 -0.7 -1.1 adenylate cyclase compare
Atu2113 -0.7 -1.7 N-acetylmuramoyl-L-alanine amidase compare
Atu2439 -0.7 -1.1 hypothetical protein compare
Atu0791 -0.7 -3.3 transcriptional regulator, GntR family compare
Atu2684 -0.7 -1.1 hypothetical protein compare
Atu0895 -0.7 -2.0 ABC transporter, substrate binding protein compare
Atu3485 -0.7 -5.2 short chain dehydrogenase compare
Atu3288 -0.7 -3.4 hydroxyethylthiazole kinase compare
Atu2057 -0.7 -1.5 DNA helicase II compare
Atu3733 -0.7 -1.9 hypothetical protein compare
Atu8055 -0.7 -1.9 hypothetical protein compare
Atu3289 -0.7 -1.7 thiamine-phosphate pyrophosphorylase compare
Atu1725 -0.7 -1.6 hypothetical protein compare
Atu2239 -0.7 -2.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1062 -0.7 -1.3 phosphatidylserine synthase compare
Atu0981 -0.7 -4.9 glutamate-ammonia-ligase adenylyltransferase compare
Atu2207 -0.7 -2.5 two component sensor kinase compare
Atu2794 -0.7 -3.5 uroporphyrin-III C-methyltransferase compare
Atu4541 -0.7 -3.5 carboxymuconolactone decarboxylase compare
Atu0777 -0.7 -0.7 hypothetical protein compare
Atu3267 -0.7 -1.9 dipeptide ABC transporter permease compare
Atu8046 -0.7 -1.0 hypothetical protein compare
Atu4232 -0.7 -2.4 GntR family transcriptional regulator compare
Atu3908 -0.7 -4.1 GntR family transcriptional regulator compare
Atu1364 -0.7 -3.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu5075 -0.7 -3.2 GntR family transcriptional regulator compare
Atu0357 -0.7 -3.9 phosphate starvation inducible protein compare
Atu2333 -0.7 -2.4 ATP-dependent RNA helicase compare
Atu0893 -0.6 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu0141 -0.6 -1.2 cytochrome O ubiquinol oxidase subunit I compare
Atu5045 -0.6 -1.0 hypothetical protein compare
Atu5043 -0.6 -1.7 hypothetical protein compare
Atu3613 -0.6 -3.0 hypothetical protein compare
Atu1469 -0.6 -1.2 hypothetical protein compare
Atu3898 -0.6 -3.0 DeoR family transcriptional regulator compare
Atu2200 -0.6 -1.9 cold shock protein compare
Atu1803 -0.6 -3.5 cold shock protein compare
Atu1242 -0.6 -3.1 cytochrome oxidase assembly factor compare
Atu3496 -0.6 -1.7 hypothetical protein compare
Atu5010 -0.6 -1.1 hypothetical protein compare
Atu2221 -0.6 -2.2 Lipid A biosynthesis protein compare
Atu2554 -0.6 -1.2 lysyl-tRNA synthetase compare
Atu3121 -0.6 -1.0 cold shock protein compare
Atu0095 -0.6 -2.7 hypothetical protein compare
Atu2299 -0.6 -2.1 hypothetical protein compare
Atu5464 -0.6 -3.3 IclR family transcriptional regulator compare
Atu1526 -0.6 -3.6 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu2744 -0.6 -4.1 C4-dicarboxylate binding protein compare
Atu0768 -0.6 -3.7 cytochrome-c oxidase chain I compare
Atu4364 -0.6 -3.3 LacI family transcriptional regulator compare
Atu2555 -0.6 -2.6 L-lysine 2,3-aminomutase compare
Atu3144 -0.6 -3.0 GntR family transcriptional regulator compare
Atu0401 -0.6 -3.0 fructokinase compare
Atu8094 -0.6 -2.2 hypothetical protein compare
Atu1445 -0.6 -2.2 two component sensor kinase compare
Atu0770 -0.6 -2.7 cytochrome C oxidase assembly protein compare
Atu0660 -0.6 -3.5 hydrolase compare
Atu3628 -0.6 -3.0 hypothetical protein compare
Atu5429 -0.6 -1.6 transcriptional regulator compare
Atu3337 -0.6 -3.0 LacI family transcriptional regulator compare
Atu5519 -0.6 -2.3 hypothetical protein compare
Atu4824 -0.6 -2.8 IclR family transcriptional regulator compare
Atu3911 -0.5 -1.5 hypothetical protein compare
Atu1074 -0.5 -3.6 NAD/NADP dependent oxidoreductase compare
Atu1570 -0.5 -0.6 hypothetical protein compare
Atu3008 -0.5 -0.6 hypothetical protein compare
Atu3910 -0.5 -2.6 LamB/YcsF family protein compare
Atu0419 -0.5 -1.0 two component sensor kinase compare
Atu4446 -0.5 -3.5 hypothetical protein compare
Atu5427 -0.5 -1.7 hypothetical protein compare
Atu0101 -0.5 -1.7 cytochrome c compare
Atu2238 -0.5 -2.7 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2827 -0.5 -2.0 hypothetical protein compare
Atu6107 -0.5 -1.9 hypothetical protein compare
Atu2743 -0.5 -3.7 hypothetical protein compare
Atu3083 -0.5 -2.8 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source D-Gluconic Acid sodium salt in Agrobacterium fabrum C58

For carbon source D-Gluconic Acid sodium salt across organisms