Experiment set2IT015 for Agrobacterium fabrum C58

Compare to:

D-Quinic acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu1140 -8.4 -5.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1308 -8.3 -5.8 aspartate carbamoyl transferase catalytic subunit compare
Atu2289 -8.0 -7.8 anthranilate synthase component I and II compare
Atu1687 -8.0 -7.8 anthranilate phosphoribosyltransferase compare
Atu4548 -8.0 -10.9 3-oxoadipate CoA-transferase subunit B conserved
Atu0486 -7.7 -5.3 dihydroorotate dehydrogenase compare
Atu2264 -7.6 -7.4 2-isopropylmalate synthase compare
Atu1750 -7.5 -6.7 phosphoribosyl c-AMP cyclohydrolase compare
Atu4547 -7.5 -8.9 3-oxoadipate CoA-transferase subunit A compare
Atu0432 -7.4 -8.8 O-succinylhomoserine sulfhydrylase compare
Atu0099 -7.3 -10.1 prephenate dehydratase compare
Atu1588 -7.3 -7.1 homoserine dehydrogenase compare
Atu0298 -7.3 -5.0 orotidine 5 compare
Atu2650 -7.2 -12.1 glycerol-3-phosphate dehydrogenase compare
Atu1307 -7.2 -8.5 dihydroorotase compare
Atu3706 -7.1 -4.9 D-3-phosphoglycerate dehydrogenase compare
Atu2709 -7.1 -16.5 3-isopropylmalate dehydratase, large subunit compare
Atu4529 -7.1 -11.8 hypothetical protein conserved
Atu2791 -7.1 -6.9 3-isopropylmalate dehydrogenase compare
Atu4505 -7.0 -10.7 LacI family transcriptional regulator compare
Atu3754 -7.0 -9.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1844 -7.0 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu3740 -6.9 -11.5 fructose bisphosphate aldolase compare
Atu0038 -6.9 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2036 -6.8 -13.1 acetolactate synthase III, large subunit compare
Atu4538 -6.8 -15.3 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu4549 -6.7 -10.3 beta-ketoadipyl CoA thiolase conserved
Atu4531 -6.7 -10.3 3-dehydroquinate dehydratase conserved
Atu1205 -6.6 -13.5 threonine dehydratase compare
Atu1620 -6.6 -12.0 triosephosphate isomerase compare
Atu1141 -6.6 -9.0 Phosphoribosylglycinamide synthetase compare
Atu0399 -6.5 -4.5 dihydroorotase compare
Atu2040 -6.5 -4.5 phosphoserine phosphatase compare
Atu0679 -6.4 -7.7 ATP phosphoribosyltransferase compare
Atu4541 -6.4 -8.7 carboxymuconolactone decarboxylase compare
Atu0035 -6.4 -12.2 phosphoenolpyruvate carboxykinase compare
Atu3783 -6.4 -17.9 glutamate synthase subunit beta compare
Atu1688 -6.3 -4.3 indole-3-glycerol-phosphate synthase compare
Atu3707 -6.3 -4.3 phosphoserine aminotransferase compare
Atu0537 -6.2 -6.1 histidinol dehydrogenase compare
Atu0400 -6.2 -6.1 orotate phosphoribosyltransferase compare
Atu3784 -6.2 -28.6 glutamate synthase large subunit compare
Atu0017 -6.1 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1075 -6.1 -9.3 amidophosphoribosyltransferase compare
Atu2747 -6.0 -15.2 hypothetical protein compare
Atu3482 -5.9 -10.5 pantoate--beta-alanine ligase compare
Atu3885 -5.8 -11.2 inositol monophosphatase compare
Atu1845 -5.6 -5.7 phosphoribosylformylglycinamidine synthase I compare
Atu3755 -5.6 -6.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4540 -5.6 -5.4 protocatechuate 3,4-dioxygenase subunit beta conserved
Atu3739 -5.5 -3.0 phosphoglycerate kinase compare
Atu0647 -5.5 -6.5 phosphoribosylamine--glycine ligase compare
Atu2790 -5.4 -3.1 3-isopropylmalate dehydratase, small subunit compare
Atu0678 -5.3 -8.2 histidyl-tRNA synthetase compare
Atu0322 -5.3 -8.2 enoyl CoA hydratase compare
Atu0043 -5.3 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu4542 -5.3 -13.4 beta-ketoadipate enol-lactone hydrolase conserved
Atu0041 -5.1 -3.5 glutamine amidotransferase compare
Atu4532 -5.1 -14.7 shikimate 5-dehydrogenase conserved
Atu0039 -5.1 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu1850 -5.0 -5.2 phosphoribosylformylglycinamidine synthetase II compare
Atu4533 -5.0 -14.5 amino acid ABC transporter ATPase/permease compare
Atu1030 -4.9 -3.3 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4535 -4.9 -10.9 amino acid ABC transporter substrate-binding protein compare
Atu3469 -4.9 -3.4 phosphoglyceromutase compare
Atu2718 -4.8 -9.2 homoserine O-succinyltransferase compare
Atu4537 -4.8 -9.2 amino acid ABC transporter permease compare
Atu4534 -4.7 -21.7 amino acid ABC transporter substrate-binding protein compare
Atu3483 -4.7 -9.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2115 -4.7 -14.5 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4096 -4.7 -12.0 nicotinate-nucleotide pyrophosphorylase compare
Atu1686 -4.6 -17.9 peptidyl-prolyl cis-trans isomerse D compare
Atu1454 -4.6 -9.8 siroheme synthase compare
Atu1589 -4.5 -8.8 aminotransferase, class I compare
Atu1456 -4.5 -13.7 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1455 -4.4 -6.9 hypothetical protein compare
Atu2015 -4.4 -14.2 aminotransferase compare
Atu4536 -4.4 -9.5 amino acid ABC transporter permease compare
Atu0031 -4.3 -2.5 PTS system, IIA component compare
Atu4098 -4.3 -15.0 quinolinate synthetase compare
Atu0536 -4.2 -11.1 hypothetical protein compare
Atu4539 -4.1 -13.6 protocatechuate 3,4-dioxygenase alpha chain conserved
Atu1748 -4.0 -10.8 NIFU-like protein compare
Atu4097 -4.0 -15.0 L-aspartate oxidase compare
Atu4543 -3.9 -6.9 LysR family transcriptional regulator compare
Atu2548 -3.6 -18.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1446 -3.6 -4.5 two component response regulator compare
Atu3731 -3.6 -11.3 5-formyltetrahydrofolate cyclo-ligase compare
Atu1685 -3.6 -2.1 hypothetical protein compare
Atu0769 -3.5 -3.8 protoheme IX farnesyltransferase compare
Atu0434 -3.4 -3.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2155 -3.3 -20.3 methionine synthase compare
Atu0029 -3.3 -7.1 S-adenosylhomocysteine hydrolase compare
Atu0502 -3.3 -10.8 acetyl-CoA acetyltransferase compare
Atu0803 -3.2 -16.7 pyruvate,orthophosphate dikinase compare
Atu1462 -3.1 -15.4 glycine cleavage system protein P2 compare
Atu0040 -3.1 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0501 -3.0 -17.8 acyl-CoA dehydrogenase compare
Atu0723 -2.9 -2.7 FAD dependent oxidoreductase compare
Atu0503 -2.9 -16.0 enoyl-CoA hydratase compare
Atu1464 -2.8 -7.7 glycine cleavage system T protein, aminomethyltransferase compare
Atu1463 -2.8 -7.0 glycine cleavage system component H compare
Atu0641 -2.7 -5.8 hypothetical protein compare
Atu2205 -2.7 -6.8 transcriptional regulator, MarR family compare
Atu3730 -2.6 -2.2 hypothetical protein compare
Atu2640 -2.3 -6.8 hypothetical protein compare
Atu3997 -2.3 -14.0 biotin synthetase compare
Atu0030 -2.3 -2.7 phosphocarrier protein HPr compare
Atu6114 -2.2 -2.7 hypothetical protein compare
Atu2209 -2.2 -6.6 pyrroline-5-carboxylate reductase compare
Atu3999 -2.2 -4.4 dithiobiotin synthetase compare
Atu0422 -2.2 -2.8 ABC transporter, membrane spanning protein compare
Atu0421 -1.9 -2.4 ABC transporter, membrane spanning protein compare
Atu0405 -1.8 -12.4 long-chain-fatty-acid-CoA-ligase compare
Atu2569 -1.8 -11.9 thiamine biosynthesis protein compare
Atu0876 -1.8 -3.1 superoxide dismutase compare
Atu3290 -1.7 -10.3 phosphomethylpyrimidine kinase compare
Atu1457 -1.7 -2.5 hypothetical protein compare
Atu8115 -1.7 -3.8 Hypothetical Protein compare
Atu3288 -1.6 -7.5 hydroxyethylthiazole kinase compare
Atu4530 -1.6 -3.5 TetR family transcriptional regulator compare
Atu2801 -1.6 -4.5 precorrin-2 C20 methyltransferase compare
Atu0141 -1.6 -2.2 cytochrome O ubiquinol oxidase subunit I compare
Atu5142 -1.6 -2.3 hypothetical protein compare
Atu4711 -1.5 -6.3 two component sensor kinase compare
Atu1445 -1.5 -4.8 two component sensor kinase compare
Atu4546 -1.4 -3.7 IclR family transcriptional regulator compare
Atu4773 -1.4 -2.1 two component response regulator compare
Atu0601 -1.3 -8.6 oxidoreductase compare
Atu4217 -1.3 -2.1 TetR family transcriptional regulator compare
Atu4000 -1.3 -10.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3289 -1.3 -2.9 thiamine-phosphate pyrophosphorylase compare
Atu3998 -1.3 -8.2 8-amino-7-oxononanoate synthase compare
Atu0346 -1.3 -2.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2432 -1.3 -2.1 hypothetical protein compare
Atu1542 -1.3 -5.6 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2193 -1.3 -1.3 hypothetical protein compare
Atu4317 -1.3 -4.2 TetR family transcriptional regulator compare
Atu0189 -1.2 -3.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0331 -1.2 -2.3 sigma-54 modulation protein compare
Atu2800 -1.2 -3.9 precorrin-3B C17-methyltransferase compare
Atu3518 -1.2 -7.6 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu1774 -1.1 -5.5 ABC transporter, substrate binding protein (peptide) compare
Atu2787 -1.1 -1.4 hypothetical protein compare
Atu1028 -1.1 -2.4 hypothetical protein compare
Atu1359 -1.1 -1.3 dnaK deletion suppressor protein compare
Atu2484 -1.0 -1.9 hypothetical protein compare
Atu4685 -1.0 -6.7 LacI family transcriptional regulator compare
Atu1904 -1.0 -2.6 transcriptional regulator compare
Atu2809 -1.0 -6.1 cobalamin biosynthesis protein compare
Atu2808 -1.0 -5.8 cobyric acid synthase compare
Atu1242 -1.0 -5.6 cytochrome oxidase assembly factor compare
Atu3732 -1.0 -4.7 hemolysin compare
Atu3505 -1.0 -5.8 3-hydroxyisobutyryl-CoA hydrolase compare
Atu0188 -0.9 -1.9 ABC transporter, membrane spanning protein (peptide) compare
Atu0602 -0.9 -5.9 glutamine synthetase compare
Atu1163 -0.9 -1.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2267 -0.9 -3.9 hypothetical protein compare
Atu2376 -0.9 -0.7 hypothetical protein compare
Atu6098 -0.9 -0.7 transcriptional regulator, HTH family compare
Atu4001 -0.9 -5.6 3-oxoacyl-ACP synthase compare
Atu2805 -0.9 -4.1 cobalamin synthesis protein compare
Atu3598 -0.9 -2.2 thiol:disulfide interchange protein compare
Atu0291 -0.9 -5.7 hypothetical protein compare
Atu1286 -0.9 -4.1 hypothetical protein compare
Atu3468 -0.9 -1.0 hypothetical protein compare
Atu2439 -0.9 -1.3 hypothetical protein compare
Atu2795 -0.9 -4.5 cobalamin biosynthetic protein compare
Atu2804 -0.9 -6.0 cobaltochelatase subunit compare
Atu2020 -0.8 -1.9 transcriptional regulator, TetR family compare
Atu2125 -0.8 -1.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2803 -0.8 -3.4 Cobalamin biosynthesis associated protein compare
Atu2802 -0.8 -3.9 precorrin-8X methylmutase compare
Atu0062 -0.8 -5.7 transcriptional regulator, ROK family compare
Atu0149 -0.8 -2.0 enoyl-(acyl-carrier-protein) reductase compare
Atu4825 -0.8 -3.5 dehydrogenase compare
Atu1705 -0.8 -3.0 SEC-independent protein translocase protein compare
Atu5470 -0.8 -2.3 hypothetical protein compare
Atu2799 -0.8 -3.9 precorrin-6x reductase compare
Atu1902 -0.8 -3.2 transketolase compare
Atu2807 -0.8 -3.6 cob(I)alamin adenosyltransferase compare
Atu4187 -0.8 -1.5 tRNA-Met compare
Atu3496 -0.8 -3.1 hypothetical protein compare
Atu0361 -0.8 -1.9 transcriptional regulator compare
Atu0768 -0.8 -5.8 cytochrome-c oxidase chain I compare
Atu1364 -0.8 -3.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0925 -0.8 -2.0 hypothetical protein compare
Atu2472 -0.8 -1.3 hypothetical protein compare
Atu3369 -0.7 -3.2 hypothetical protein compare
Atu2797 -0.7 -2.4 cobalamin biosynthesis protein compare
Atu3727 -0.7 -2.4 hypothetical protein compare
Atu1258 -0.7 -3.8 ATP-dependent Clp protease, proteolytic subunit compare
Atu0101 -0.7 -3.3 cytochrome c compare
Atu1021 -0.7 -1.8 outer membrane protein compare
Atu0419 -0.7 -1.6 two component sensor kinase compare
Atu2207 -0.7 -1.5 two component sensor kinase compare
Atu0767 -0.7 -2.9 cytochrome c oxidase subunit II compare
Atu2684 -0.7 -1.4 hypothetical protein compare
Atu2827 -0.7 -2.0 hypothetical protein compare
Atu3162 -0.7 -4.6 LacI family transcriptional regulator compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source Quinic Acid in Agrobacterium fabrum C58

For carbon source Quinic Acid across organisms