Experiment set2IT014 for Agrobacterium fabrum C58

Compare to:

D-Quinic acid carbon source

200 most important genes:

  gene name fitness t score description  
Atu4505 -8.0 -5.5 LacI family transcriptional regulator compare
Atu0035 -7.8 -9.3 phosphoenolpyruvate carboxykinase compare
Atu2650 -7.8 -10.7 glycerol-3-phosphate dehydrogenase compare
Atu2709 -7.7 -12.8 3-isopropylmalate dehydratase, large subunit compare
Atu4548 -7.6 -12.6 3-oxoadipate CoA-transferase subunit B conserved
Atu1588 -7.6 -5.2 homoserine dehydrogenase compare
Atu2791 -7.6 -7.4 3-isopropylmalate dehydrogenase compare
Atu0099 -7.5 -9.0 prephenate dehydratase compare
Atu2289 -7.5 -13.5 anthranilate synthase component I and II compare
Atu1687 -7.4 -10.1 anthranilate phosphoribosyltransferase compare
Atu0400 -7.2 -5.0 orotate phosphoribosyltransferase compare
Atu4538 -7.2 -14.7 3-carboxy-cis,cis-muconate cycloisomerase compare
Atu1075 -7.2 -5.0 amidophosphoribosyltransferase compare
Atu3706 -7.2 -5.0 D-3-phosphoglycerate dehydrogenase compare
Atu2264 -7.0 -12.6 2-isopropylmalate synthase compare
Atu1205 -7.0 -11.7 threonine dehydratase compare
Atu1844 -7.0 -4.8 Phosphoribosylformylglycinamidine synthetase compare
Atu3482 -7.0 -9.5 pantoate--beta-alanine ligase compare
Atu0298 -6.9 -6.7 orotidine 5 compare
Atu0038 -6.9 -6.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0432 -6.9 -9.4 O-succinylhomoserine sulfhydrylase compare
Atu4531 -6.8 -9.4 3-dehydroquinate dehydratase conserved
Atu4547 -6.8 -13.1 3-oxoadipate CoA-transferase subunit A compare
Atu4529 -6.8 -13.1 hypothetical protein conserved
Atu1750 -6.8 -6.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu3483 -6.8 -6.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2036 -6.7 -13.0 acetolactate synthase III, large subunit compare
Atu3740 -6.7 -10.3 fructose bisphosphate aldolase compare
Atu1845 -6.7 -6.5 phosphoribosylformylglycinamidine synthase I compare
Atu4541 -6.6 -7.9 carboxymuconolactone decarboxylase compare
Atu1620 -6.6 -11.9 triosephosphate isomerase compare
Atu4549 -6.5 -10.0 beta-ketoadipyl CoA thiolase conserved
Atu4532 -6.4 -12.3 shikimate 5-dehydrogenase conserved
Atu1308 -6.4 -8.2 aspartate carbamoyl transferase catalytic subunit compare
Atu4542 -6.4 -14.8 beta-ketoadipate enol-lactone hydrolase conserved
Atu1141 -6.3 -9.7 Phosphoribosylglycinamide synthetase compare
Atu3707 -6.3 -4.3 phosphoserine aminotransferase compare
Atu0679 -6.3 -7.5 ATP phosphoribosyltransferase compare
Atu3783 -6.2 -16.8 glutamate synthase subunit beta compare
Atu2747 -6.2 -16.1 hypothetical protein compare
Atu0486 -6.2 -7.0 dihydroorotate dehydrogenase compare
Atu0537 -6.2 -6.0 histidinol dehydrogenase compare
Atu0017 -6.2 -4.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1307 -6.1 -8.4 dihydroorotase compare
Atu3784 -6.1 -29.5 glutamate synthase large subunit compare
Atu1688 -6.1 -5.9 indole-3-glycerol-phosphate synthase compare
Atu2040 -6.0 -5.8 phosphoserine phosphatase compare
Atu3754 -6.0 -4.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1140 -5.8 -5.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1850 -5.8 -6.9 phosphoribosylformylglycinamidine synthetase II compare
Atu0647 -5.7 -5.5 phosphoribosylamine--glycine ligase compare
Atu0399 -5.6 -6.7 dihydroorotase compare
Atu3885 -5.6 -10.7 inositol monophosphatase compare
Atu3739 -5.6 -2.8 phosphoglycerate kinase compare
Atu3755 -5.6 -6.6 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2115 -5.5 -12.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu4533 -5.4 -13.4 amino acid ABC transporter ATPase/permease compare
Atu2790 -5.4 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu0043 -5.3 -3.7 imidazoleglycerol-phosphate dehydratase compare
Atu4539 -5.3 -14.5 protocatechuate 3,4-dioxygenase alpha chain conserved
Atu4096 -5.3 -14.5 nicotinate-nucleotide pyrophosphorylase compare
Atu4540 -5.3 -4.9 protocatechuate 3,4-dioxygenase subunit beta conserved
Atu0322 -5.2 -10.0 enoyl CoA hydratase compare
Atu0041 -5.2 -3.6 glutamine amidotransferase compare
Atu2718 -5.1 -9.7 homoserine O-succinyltransferase compare
Atu0678 -5.1 -7.8 histidyl-tRNA synthetase compare
Atu0039 -5.1 -3.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu4537 -5.1 -8.4 amino acid ABC transporter permease compare
Atu4535 -5.1 -9.4 amino acid ABC transporter substrate-binding protein compare
Atu1030 -4.9 -3.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1686 -4.8 -19.3 peptidyl-prolyl cis-trans isomerse D compare
Atu1455 -4.6 -7.5 hypothetical protein compare
Atu4536 -4.5 -9.9 amino acid ABC transporter permease compare
Atu1456 -4.5 -13.3 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1454 -4.5 -14.3 siroheme synthase compare
Atu4534 -4.4 -18.3 amino acid ABC transporter substrate-binding protein compare
Atu4098 -4.4 -13.8 quinolinate synthetase compare
Atu2015 -4.2 -16.5 aminotransferase compare
Atu0536 -4.2 -11.7 hypothetical protein compare
Atu3731 -4.1 -10.1 5-formyltetrahydrofolate cyclo-ligase compare
Atu1589 -4.1 -8.3 aminotransferase, class I compare
Atu3469 -4.1 -4.0 phosphoglyceromutase compare
Atu1748 -4.0 -12.4 NIFU-like protein compare
Atu3999 -3.9 -4.6 dithiobiotin synthetase compare
Atu2548 -3.8 -19.4 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu4097 -3.7 -11.7 L-aspartate oxidase compare
Atu4543 -3.3 -7.5 LysR family transcriptional regulator compare
Atu0769 -3.3 -3.1 protoheme IX farnesyltransferase compare
Atu2155 -3.2 -18.8 methionine synthase compare
Atu0803 -3.1 -17.0 pyruvate,orthophosphate dikinase compare
Atu1463 -3.1 -9.5 glycine cleavage system component H compare
Atu0040 -3.1 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2205 -3.0 -6.3 transcriptional regulator, MarR family compare
Atu0501 -3.0 -15.3 acyl-CoA dehydrogenase compare
Atu1446 -3.0 -4.9 two component response regulator compare
Atu1685 -2.9 -1.9 hypothetical protein compare
Atu0503 -2.9 -17.7 enoyl-CoA hydratase compare
Atu0031 -2.8 -2.4 PTS system, IIA component compare
Atu1462 -2.8 -12.3 glycine cleavage system protein P2 compare
Atu1457 -2.7 -3.2 hypothetical protein compare
Atu1464 -2.6 -7.3 glycine cleavage system T protein, aminomethyltransferase compare
Atu4530 -2.4 -7.2 TetR family transcriptional regulator compare
Atu0502 -2.4 -7.9 acetyl-CoA acetyltransferase compare
Atu0434 -2.4 -3.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu6114 -2.3 -4.0 hypothetical protein compare
Atu3997 -2.3 -11.9 biotin synthetase compare
Atu0029 -2.3 -7.4 S-adenosylhomocysteine hydrolase compare
Atu0641 -2.2 -5.3 hypothetical protein compare
Atu2640 -2.0 -6.1 hypothetical protein compare
Atu2209 -2.0 -4.6 pyrroline-5-carboxylate reductase compare
Atu8115 -2.0 -4.8 Hypothetical Protein compare
Atu3289 -2.0 -6.1 thiamine-phosphate pyrophosphorylase compare
Atu3290 -1.9 -10.2 phosphomethylpyrimidine kinase compare
Atu4711 -1.9 -5.0 two component sensor kinase compare
Atu0030 -1.9 -2.4 phosphocarrier protein HPr compare
Atu0405 -1.8 -12.4 long-chain-fatty-acid-CoA-ligase compare
Atu2569 -1.8 -10.2 thiamine biosynthesis protein compare
Atu0331 -1.8 -4.3 sigma-54 modulation protein compare
Atu4546 -1.7 -4.1 IclR family transcriptional regulator compare
Atu3730 -1.7 -2.2 hypothetical protein compare
Atu0346 -1.7 -4.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3288 -1.6 -7.3 hydroxyethylthiazole kinase compare
Atu6098 -1.5 -1.0 transcriptional regulator, HTH family compare
Atu0894 -1.5 -3.3 ABC transporter, membrane spanning protein compare
Atu0421 -1.4 -2.0 ABC transporter, membrane spanning protein compare
Atu0601 -1.4 -7.0 oxidoreductase compare
Atu2017 -1.4 -1.6 hypothetical protein compare
Atu3763 -1.4 -2.3 hypothetical protein compare
Atu4000 -1.4 -9.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu4317 -1.3 -3.1 TetR family transcriptional regulator compare
Atu1445 -1.3 -5.9 two component sensor kinase compare
Atu0723 -1.2 -1.7 FAD dependent oxidoreductase compare
Atu0422 -1.2 -2.1 ABC transporter, membrane spanning protein compare
Atu0188 -1.2 -3.2 ABC transporter, membrane spanning protein (peptide) compare
Atu2801 -1.2 -5.2 precorrin-2 C20 methyltransferase compare
Atu3998 -1.2 -8.5 8-amino-7-oxononanoate synthase compare
Atu1542 -1.1 -4.5 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2684 -1.1 -2.4 hypothetical protein compare
Atu4161 -1.1 -2.4 hypothetical protein compare
Atu5451 -1.1 -1.4 hypothetical protein compare
Atu2809 -1.1 -5.6 cobalamin biosynthesis protein compare
Atu1774 -1.0 -6.2 ABC transporter, substrate binding protein (peptide) compare
Atu1260 -1.0 -1.7 hypothetical protein compare
Atu2802 -1.0 -4.4 precorrin-8X methylmutase compare
Atu2484 -1.0 -1.8 hypothetical protein compare
Atu6165 -1.0 -1.1 hypothetical protein compare
Atu2504 -1.0 -5.2 transcriptional regulator, GntR family compare
Atu1874 -1.0 -2.5 RecA protein compare
Atu2125 -1.0 -1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1242 -1.0 -4.9 cytochrome oxidase assembly factor compare
Atu1705 -1.0 -2.9 SEC-independent protein translocase protein compare
Atu3031 -1.0 -1.3 hypothetical protein compare
Atu2796 -1.0 -3.9 precorrin-4 C11-methyltransferase compare
Atu1028 -1.0 -2.1 hypothetical protein compare
Atu1359 -0.9 -1.1 dnaK deletion suppressor protein compare
Atu2808 -0.9 -4.3 cobyric acid synthase compare
Atu2800 -0.9 -1.9 precorrin-3B C17-methyltransferase compare
Atu0602 -0.9 -4.7 glutamine synthetase compare
Atu2267 -0.9 -3.8 hypothetical protein compare
Atu0876 -0.9 -1.9 superoxide dismutase compare
Atu1364 -0.9 -3.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu5470 -0.9 -1.7 hypothetical protein compare
Atu0190 -0.9 -3.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0062 -0.9 -5.2 transcriptional regulator, ROK family compare
Atu2554 -0.9 -2.0 lysyl-tRNA synthetase compare
Atu4685 -0.9 -5.8 LacI family transcriptional regulator compare
Atu2239 -0.9 -1.3 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3732 -0.9 -4.5 hemolysin compare
Atu1163 -0.9 -1.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2799 -0.8 -3.4 precorrin-6x reductase compare
Atu3505 -0.8 -4.4 3-hydroxyisobutyryl-CoA hydrolase compare
Atu2807 -0.8 -4.6 cob(I)alamin adenosyltransferase compare
Atu4773 -0.8 -1.2 two component response regulator compare
Atu2795 -0.8 -5.4 cobalamin biosynthetic protein compare
Atu4477 -0.8 -3.7 TetR family transcriptional regulator compare
Atu0291 -0.8 -4.3 hypothetical protein compare
Atu1182 -0.8 -1.2 hypothetical protein compare
Atu4072 -0.8 -1.6 nodulation protein N compare
Atu0971 -0.8 -2.4 two component sensor kinase compare
Atu4223 -0.8 -1.5 sarcosine oxidase delta subunit compare
Atu2798 -0.8 -3.5 precorrin-6y methyltransferase compare
Atu2805 -0.8 -3.7 cobalamin synthesis protein compare
Atu3518 -0.8 -3.9 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu2238 -0.8 -4.0 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu5142 -0.8 -1.3 hypothetical protein compare
Atu0677 -0.8 -1.4 hypothetical protein compare
Atu3727 -0.8 -2.4 hypothetical protein compare
Atu2335 -0.7 -1.7 hypothetical protein compare
Atu1891 -0.7 -2.5 cobalamin biosynthesis protein compare
Atu2020 -0.7 -1.5 transcriptional regulator, TetR family compare
Atu1449 -0.7 -2.7 potassium uptake protein compare
Atu0141 -0.7 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu0101 -0.7 -1.7 cytochrome c compare
Atu4001 -0.7 -3.9 3-oxoacyl-ACP synthase compare
Atu3468 -0.7 -0.8 hypothetical protein compare
Atu1902 -0.7 -3.1 transketolase compare
Atu0225 -0.7 -0.9 hypothetical protein compare
Atu2376 -0.7 -0.5 hypothetical protein compare
Atu3598 -0.7 -1.5 thiol:disulfide interchange protein compare
Atu4217 -0.7 -1.4 TetR family transcriptional regulator compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source Quinic Acid in Agrobacterium fabrum C58

For carbon source Quinic Acid across organisms