Experiment set2IT013 for Agrobacterium fabrum C58

Compare to:

D-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
Atu1687 -7.8 -7.6 anthranilate phosphoribosyltransferase compare
Atu2289 -6.7 -16.1 anthranilate synthase component I and II compare
Atu1205 -6.4 -12.3 threonine dehydratase compare
Atu2264 -6.2 -14.9 2-isopropylmalate synthase compare
Atu3707 -6.1 -4.2 phosphoserine aminotransferase compare
Atu0099 -6.0 -11.8 prephenate dehydratase compare
Atu2709 -6.0 -19.9 3-isopropylmalate dehydratase, large subunit compare
Atu0017 -5.9 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0678 -5.8 -5.7 histidyl-tRNA synthetase compare
Atu2791 -5.8 -9.7 3-isopropylmalate dehydrogenase compare
Atu0679 -5.7 -7.8 ATP phosphoribosyltransferase compare
Atu0399 -5.7 -7.8 dihydroorotase compare
Atu1688 -5.7 -6.8 indole-3-glycerol-phosphate synthase compare
Atu2040 -5.5 -6.5 phosphoserine phosphatase compare
Atu1750 -5.5 -8.9 phosphoribosyl c-AMP cyclohydrolase compare
Atu2036 -5.5 -17.1 acetolactate synthase III, large subunit compare
Atu0298 -5.4 -9.0 orotidine 5 compare
Atu0038 -5.4 -6.9 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2650 -5.4 -13.6 glycerol-3-phosphate dehydrogenase compare
Atu3706 -5.3 -11.3 D-3-phosphoglycerate dehydrogenase compare
Atu0432 -5.3 -8.3 O-succinylhomoserine sulfhydrylase compare
Atu1850 -5.2 -5.1 phosphoribosylformylglycinamidine synthetase II compare
Atu3754 -5.2 -9.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0043 -5.1 -3.5 imidazoleglycerol-phosphate dehydratase compare
Atu3885 -5.1 -11.7 inositol monophosphatase compare
Atu0400 -5.0 -5.7 orotate phosphoribosyltransferase compare
Atu0041 -4.9 -3.4 glutamine amidotransferase compare
Atu3469 -4.9 -3.4 phosphoglyceromutase compare
Atu0039 -4.9 -3.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu1845 -4.9 -6.3 phosphoribosylformylglycinamidine synthase I compare
Atu1588 -4.8 -11.2 homoserine dehydrogenase compare
Atu2718 -4.8 -10.2 homoserine O-succinyltransferase compare
Atu1140 -4.8 -5.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0537 -4.7 -7.9 histidinol dehydrogenase compare
Atu3755 -4.7 -7.2 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0486 -4.7 -7.5 dihydroorotate dehydrogenase compare
Atu1308 -4.7 -6.2 aspartate carbamoyl transferase catalytic subunit compare
Atu1307 -4.6 -6.8 dihydroorotase compare
Atu1075 -4.6 -9.1 amidophosphoribosyltransferase compare
Atu1141 -4.5 -9.5 Phosphoribosylglycinamide synthetase compare
Atu2790 -4.4 -3.7 3-isopropylmalate dehydratase, small subunit compare
Atu2747 -4.3 -14.2 hypothetical protein compare
Atu3482 -4.1 -13.8 pantoate--beta-alanine ligase compare
Atu1844 -4.0 -4.3 Phosphoribosylformylglycinamidine synthetase compare
Atu0014 -4.0 -11.7 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase conserved
Atu3783 -3.9 -17.9 glutamate synthase subunit beta compare
Atu2015 -3.8 -14.6 aminotransferase compare
Atu0035 -3.6 -12.0 phosphoenolpyruvate carboxykinase compare
Atu2822 -3.4 -13.7 D-galactarate dehydratase compare
Atu0647 -3.3 -9.6 phosphoribosylamine--glycine ligase compare
Atu4505 -3.2 -11.4 LacI family transcriptional regulator compare
Atu1446 -3.1 -4.6 two component response regulator compare
Atu2816 -3.1 -18.1 oxidoreductase compare
Atu3784 -3.0 -23.6 glutamate synthase large subunit compare
Atu1589 -3.0 -11.5 aminotransferase, class I compare
Atu0040 -2.9 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3483 -2.9 -9.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1686 -2.9 -17.7 peptidyl-prolyl cis-trans isomerse D compare
Atu1030 -2.9 -1.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1456 -2.9 -12.5 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu1455 -2.8 -3.1 hypothetical protein compare
Atu4098 -2.6 -12.7 quinolinate synthetase compare
Atu1454 -2.6 -12.4 siroheme synthase compare
Atu4096 -2.5 -7.7 nicotinate-nucleotide pyrophosphorylase compare
Atu2548 -2.5 -14.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2819 -2.4 -15.0 ABC transporter, nucleotide binding/ATPase protein (ribose) compare
Atu3763 -2.3 -2.6 hypothetical protein compare
Atu3739 -2.3 -4.8 phosphoglycerate kinase compare
Atu2817 -2.2 -12.1 ABC transporter, substrate binding protein (ribose) compare
Atu4097 -2.2 -10.6 L-aspartate oxidase compare
Atu4451 -2.1 -8.6 mannitol 2-dehydrogenase compare
Atu2155 -2.1 -16.0 methionine synthase compare
Atu2818 -2.1 -10.5 ABC transporter, membrane spanning protein (ribose) compare
Atu0346 -2.1 -2.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1748 -2.1 -7.8 NIFU-like protein compare
Atu2815 -2.0 -10.8 hypothetical protein compare
Atu3289 -1.9 -6.5 thiamine-phosphate pyrophosphorylase compare
Atu0769 -1.9 -3.0 protoheme IX farnesyltransferase compare
Atu0641 -1.9 -5.2 hypothetical protein compare
Atu1620 -1.8 -9.8 triosephosphate isomerase compare
Atu1457 -1.8 -2.1 hypothetical protein compare
Atu0536 -1.7 -6.0 hypothetical protein compare
Atu3740 -1.7 -10.1 fructose bisphosphate aldolase compare
Atu3008 -1.6 -1.6 hypothetical protein compare
Atu0101 -1.6 -4.1 cytochrome c compare
Atu2741 -1.5 -11.5 hypothetical protein conserved
Atu2239 -1.5 -3.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2238 -1.5 -8.9 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4482 -1.5 -9.8 xylulokinase conserved
Atu1286 -1.5 -3.9 hypothetical protein compare
Atu1570 -1.5 -1.3 hypothetical protein compare
Atu0768 -1.5 -9.3 cytochrome-c oxidase chain I compare
Atu2237 -1.4 -4.6 cytochrome c1 compare
Atu0803 -1.4 -11.2 pyruvate,orthophosphate dikinase compare
Atu1685 -1.4 -1.5 hypothetical protein compare
Atu2821 -1.4 -3.1 transcriptional regulator, GntR family compare
Atu2022 -1.4 -8.0 NADP-dependent alcohol dehydrogenase compare
Atu3598 -1.4 -2.8 thiol:disulfide interchange protein compare
Atu0141 -1.4 -2.4 cytochrome O ubiquinol oxidase subunit I compare
Atu1546 -1.3 -5.3 transcriptional regulator, MerR family compare
Atu2209 -1.3 -4.6 pyrroline-5-carboxylate reductase compare
Atu1163 -1.3 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1242 -1.3 -6.9 cytochrome oxidase assembly factor compare
Atu0031 -1.3 -1.8 PTS system, IIA component compare
Atu0767 -1.3 -6.5 cytochrome c oxidase subunit II compare
Atu0723 -1.3 -1.7 FAD dependent oxidoreductase compare
Atu0421 -1.3 -2.0 ABC transporter, membrane spanning protein compare
Atu0422 -1.3 -1.9 ABC transporter, membrane spanning protein compare
Atu0770 -1.3 -6.4 cytochrome C oxidase assembly protein compare
Atu2554 -1.3 -2.4 lysyl-tRNA synthetase compare
Atu3290 -1.3 -7.1 phosphomethylpyrimidine kinase compare
Atu8052 -1.3 -2.0 hypothetical protein compare
Atu2684 -1.3 -2.4 hypothetical protein compare
Atu3288 -1.2 -4.2 hydroxyethylthiazole kinase compare
Atu3727 -1.2 -3.6 hypothetical protein compare
Atu0029 -1.2 -4.5 S-adenosylhomocysteine hydrolase compare
Atu0912 -1.2 -2.0 Na+/H+ antiporter compare
Atu0190 -1.2 -5.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2442 -1.2 -3.3 hypothetical protein compare
Atu1074 -1.1 -6.2 NAD/NADP dependent oxidoreductase compare
Atu1705 -1.1 -4.2 SEC-independent protein translocase protein compare
Atu2569 -1.1 -8.3 thiamine biosynthesis protein compare
Atu4711 -1.1 -5.3 two component sensor kinase compare
Atu3878 -1.1 -6.9 transcriptional regulator compare
Atu5540 -1.1 -1.1 hypothetical protein compare
Atu0771 -1.1 -6.0 cytochrome c oxidase subunit III compare
Atu6114 -1.0 -2.7 hypothetical protein compare
Atu6189 -1.0 -1.4 protein secretion chaperone compare
Atu1774 -1.0 -6.0 ABC transporter, substrate binding protein (peptide) compare
Atu2207 -1.0 -2.6 two component sensor kinase compare
Atu2376 -0.9 -0.8 hypothetical protein compare
Atu1464 -0.9 -4.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu8115 -0.9 -3.4 Hypothetical Protein compare
Atu0269 -0.9 -3.8 exodeoxyribonuclease VII large subunit compare
Atu3337 -0.9 -4.4 LacI family transcriptional regulator compare
Atu4501 -0.9 -6.8 hypothetical protein compare
Atu2115 -0.9 -5.0 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2035 -0.9 -5.8 acetolactate synthase, small subunit compare
Atu4449 -0.9 -5.2 sorbitol/mannitol ABC transporter permease compare
Atu2633 -0.9 -2.0 RhtB family transporter compare
Atu3730 -0.9 -1.4 hypothetical protein compare
Atu4448 -0.8 -4.9 sorbitol/mannitol ABC transporter permease conserved
Atu0405 -0.8 -6.8 long-chain-fatty-acid-CoA-ligase compare
Atu3496 -0.8 -3.3 hypothetical protein compare
Atu1463 -0.8 -4.1 glycine cleavage system component H compare
Atu0687 -0.8 -2.3 hypothetical protein compare
Atu0189 -0.8 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu1435 -0.8 -1.5 hypothetical protein compare
Atu0434 -0.8 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4450 -0.8 -4.6 sugar ABC transporter ATPase compare
Atu2021 -0.8 -2.8 transcriptional regulator, AraC family compare
Atu1462 -0.8 -4.8 glycine cleavage system protein P2 compare
Atu0361 -0.8 -1.8 transcriptional regulator compare
Atu0846 -0.7 -2.3 transcriptional regulator, MarR family compare
Atu0130 -0.7 -1.4 cytidine deaminase compare
Atu0322 -0.7 -3.1 enoyl CoA hydratase compare
Atu4841 -0.7 -5.0 DeoR family transcriptional regulator compare
Atu3697 -0.7 -3.7 ATP-dependent protease LA 2 compare
Atu2073 -0.7 -4.1 membrane protein compare
Atu3750 -0.7 -1.9 thiamine-phosphate pyrophosphorylase compare
Atu5142 -0.7 -1.3 hypothetical protein compare
Atu0188 -0.7 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu1522 -0.7 -3.8 transcriptional regulator, LacI family compare
Atu4447 -0.7 -5.3 sorbitol ABC transporter substrate-binding protein compare
Atu0773 -0.7 -3.4 surfeit 1 compare
Atu1714 -0.7 -1.3 exonuclease III compare
Atu2484 -0.6 -1.2 hypothetical protein compare
Atu1028 -0.6 -1.3 hypothetical protein compare
Atu2249 -0.6 -0.9 hypothetical protein compare
Atu1445 -0.6 -3.0 two component sensor kinase compare
Atu1359 -0.6 -0.8 dnaK deletion suppressor protein compare
Atu3997 -0.6 -4.3 biotin synthetase compare
Atu0971 -0.6 -2.3 two component sensor kinase compare
Atu0664 -0.6 -4.2 transcriptional regulator, LysR family compare
Atu2555 -0.6 -2.8 L-lysine 2,3-aminomutase compare
Atu0694 -0.6 -3.6 inositol monophosphatase family protein compare
Atu0413 -0.6 -1.4 stress induced protein compare
Atu3634 -0.6 -2.8 penicillin-binding protein dacf precursor compare
Atu0590 -0.6 -3.7 transcriptional regulator repressor compare
Atu0953 -0.6 -0.5 hypothetical protein compare
Atu3336 -0.6 -2.5 hypothetical protein compare
Atu5468 -0.6 -1.2 hypothetical protein compare
Atu3613 -0.6 -2.4 hypothetical protein compare
Atu0939 -0.6 -1.3 PemI protein compare
Atu0702 -0.6 -1.4 calcium-binding protein, regucalcin compare
Atu1760 -0.6 -0.9 hypothetical protein compare
Atu0357 -0.6 -3.0 phosphate starvation inducible protein compare
Atu0471 -0.5 -1.5 hypothetical protein compare
Atu3744 -0.5 -3.3 ABC transporter permease compare
Atu1364 -0.5 -2.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2428 -0.5 -3.2 exopolysaccharide production protein PssB compare
Atu3240 -0.5 -3.3 ROK family transcriptional regulator compare
Atu8166 -0.5 -1.9 hypothetical protein compare
Atu2057 -0.5 -1.6 DNA helicase II compare
Atu4567 -0.5 -2.9 ROK family transcriptional regulator compare
Atu1468 -0.5 -3.0 hypothetical protein compare
Atu4685 -0.5 -3.2 LacI family transcriptional regulator compare
Atu4873 -0.5 -2.8 TetR family transcriptional regulator compare
Atu4576 -0.5 -3.3 ROK family transcriptional regulator compare
Atu4176 -0.5 -2.0 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For carbon source D-Arabinose in Agrobacterium fabrum C58

For carbon source D-Arabinose across organisms