Experiment set2IT012 for Agrobacterium fabrum C58

Compare to:

D-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
Atu0099 -7.0 -8.4 prephenate dehydratase compare
Atu3706 -6.5 -6.4 D-3-phosphoglycerate dehydrogenase compare
Atu2289 -6.5 -15.1 anthranilate synthase component I and II compare
Atu1687 -6.5 -10.8 anthranilate phosphoribosyltransferase compare
Atu1750 -6.4 -6.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu0400 -6.2 -6.0 orotate phosphoribosyltransferase compare
Atu2040 -6.1 -4.2 phosphoserine phosphatase compare
Atu2709 -6.0 -20.3 3-isopropylmalate dehydratase, large subunit compare
Atu1075 -6.0 -7.1 amidophosphoribosyltransferase compare
Atu3707 -5.9 -4.1 phosphoserine aminotransferase compare
Atu0678 -5.8 -4.0 histidyl-tRNA synthetase compare
Atu2264 -5.8 -13.5 2-isopropylmalate synthase compare
Atu2036 -5.7 -15.6 acetolactate synthase III, large subunit compare
Atu0679 -5.4 -7.4 ATP phosphoribosyltransferase compare
Atu0298 -5.4 -8.3 orotidine 5 compare
Atu2650 -5.2 -13.5 glycerol-3-phosphate dehydrogenase compare
Atu2791 -5.2 -8.3 3-isopropylmalate dehydrogenase compare
Atu1140 -5.2 -4.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0432 -5.0 -8.6 O-succinylhomoserine sulfhydrylase compare
Atu1588 -5.0 -10.6 homoserine dehydrogenase compare
Atu1205 -5.0 -15.0 threonine dehydratase compare
Atu2718 -4.9 -8.2 homoserine O-succinyltransferase compare
Atu0043 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase compare
Atu3754 -4.8 -8.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0017 -4.8 -4.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -4.7 -6.2 indole-3-glycerol-phosphate synthase compare
Atu0041 -4.7 -3.2 glutamine amidotransferase compare
Atu1308 -4.6 -7.1 aspartate carbamoyl transferase catalytic subunit compare
Atu1845 -4.6 -5.9 phosphoribosylformylglycinamidine synthase I compare
Atu1307 -4.6 -7.1 dihydroorotase compare
Atu0537 -4.5 -8.0 histidinol dehydrogenase compare
Atu3755 -4.5 -6.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0038 -4.3 -5.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0486 -4.2 -5.8 dihydroorotate dehydrogenase compare
Atu2790 -4.2 -3.5 3-isopropylmalate dehydratase, small subunit compare
Atu2747 -4.1 -15.1 hypothetical protein compare
Atu3885 -4.0 -11.9 inositol monophosphatase compare
Atu1844 -4.0 -5.4 Phosphoribosylformylglycinamidine synthetase compare
Atu0014 -3.9 -11.3 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase conserved
Atu0031 -3.9 -2.3 PTS system, IIA component compare
Atu0035 -3.9 -10.7 phosphoenolpyruvate carboxykinase compare
Atu3783 -3.9 -17.3 glutamate synthase subunit beta compare
Atu0769 -3.8 -3.5 protoheme IX farnesyltransferase compare
Atu0039 -3.8 -3.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu1141 -3.7 -9.0 Phosphoribosylglycinamide synthetase compare
Atu3482 -3.7 -10.0 pantoate--beta-alanine ligase compare
Atu4505 -3.7 -13.2 LacI family transcriptional regulator compare
Atu0647 -3.7 -7.4 phosphoribosylamine--glycine ligase compare
Atu2015 -3.7 -12.9 aminotransferase compare
Atu0399 -3.6 -6.2 dihydroorotase compare
Atu3483 -3.4 -7.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3469 -3.4 -4.0 phosphoglyceromutase compare
Atu2822 -3.3 -13.9 D-galactarate dehydratase compare
Atu1850 -3.3 -3.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1030 -3.2 -2.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3739 -3.2 -4.1 phosphoglycerate kinase compare
Atu3784 -2.9 -22.0 glutamate synthase large subunit compare
Atu1686 -2.9 -17.1 peptidyl-prolyl cis-trans isomerse D compare
Atu1456 -2.9 -12.8 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0040 -2.7 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2816 -2.7 -10.6 oxidoreductase compare
Atu4098 -2.6 -10.1 quinolinate synthetase compare
Atu2819 -2.5 -17.5 ABC transporter, nucleotide binding/ATPase protein (ribose) compare
Atu1748 -2.5 -11.1 NIFU-like protein compare
Atu2815 -2.5 -9.8 hypothetical protein compare
Atu4451 -2.4 -10.1 mannitol 2-dehydrogenase compare
Atu3468 -2.4 -1.7 hypothetical protein compare
Atu2817 -2.4 -11.1 ABC transporter, substrate binding protein (ribose) compare
Atu4096 -2.4 -8.8 nicotinate-nucleotide pyrophosphorylase compare
Atu0346 -2.3 -3.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2818 -2.2 -9.8 ABC transporter, membrane spanning protein (ribose) compare
Atu4097 -2.2 -8.9 L-aspartate oxidase compare
Atu1454 -2.2 -5.9 siroheme synthase compare
Atu2548 -2.2 -14.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu0641 -2.1 -4.9 hypothetical protein compare
Atu0723 -2.1 -2.4 FAD dependent oxidoreductase compare
Atu1589 -2.1 -7.1 aminotransferase, class I compare
Atu2155 -2.0 -14.1 methionine synthase compare
Atu3740 -1.9 -10.5 fructose bisphosphate aldolase compare
Atu0421 -1.9 -2.2 ABC transporter, membrane spanning protein compare
Atu3598 -1.8 -3.7 thiol:disulfide interchange protein compare
Atu1455 -1.8 -3.1 hypothetical protein compare
Atu1620 -1.8 -9.6 triosephosphate isomerase compare
Atu1286 -1.7 -4.4 hypothetical protein compare
Atu0536 -1.7 -7.8 hypothetical protein compare
Atu1446 -1.6 -2.9 two component response regulator compare
Atu2239 -1.6 -4.1 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0768 -1.6 -10.3 cytochrome-c oxidase chain I compare
Atu1242 -1.5 -8.6 cytochrome oxidase assembly factor compare
Atu4482 -1.5 -8.8 xylulokinase conserved
Atu0189 -1.5 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu0767 -1.4 -5.4 cytochrome c oxidase subunit II compare
Atu0803 -1.4 -10.9 pyruvate,orthophosphate dikinase compare
Atu4072 -1.4 -2.0 nodulation protein N compare
Atu6098 -1.4 -1.0 transcriptional regulator, HTH family compare
Atu3289 -1.3 -4.2 thiamine-phosphate pyrophosphorylase compare
Atu2741 -1.3 -10.4 hypothetical protein conserved
Atu2238 -1.3 -6.7 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2022 -1.3 -8.3 NADP-dependent alcohol dehydrogenase compare
Atu0771 -1.3 -6.4 cytochrome c oxidase subunit III compare
Atu6114 -1.3 -1.3 hypothetical protein compare
Atu4448 -1.3 -7.2 sorbitol/mannitol ABC transporter permease conserved
Atu2442 -1.3 -3.0 hypothetical protein compare
Atu1774 -1.3 -7.8 ABC transporter, substrate binding protein (peptide) compare
Atu1074 -1.2 -7.1 NAD/NADP dependent oxidoreductase compare
Atu3288 -1.2 -5.3 hydroxyethylthiazole kinase compare
Atu1457 -1.2 -1.6 hypothetical protein compare
Atu2237 -1.2 -4.2 cytochrome c1 compare
Atu1464 -1.1 -5.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu3290 -1.1 -5.1 phosphomethylpyrimidine kinase compare
Atu3008 -1.1 -1.2 hypothetical protein compare
Atu1163 -1.1 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4711 -1.1 -5.8 two component sensor kinase compare
Atu0770 -1.1 -5.5 cytochrome C oxidase assembly protein compare
Atu1359 -1.1 -1.2 dnaK deletion suppressor protein compare
Atu2684 -1.1 -1.3 hypothetical protein compare
Atu2123 -1.1 -4.1 methylenetetrahydrofolate reductase compare
Atu3878 -1.1 -5.5 transcriptional regulator compare
Atu2021 -1.1 -2.9 transcriptional regulator, AraC family compare
Atu0029 -1.0 -3.7 S-adenosylhomocysteine hydrolase compare
Atu8115 -1.0 -3.4 Hypothetical Protein compare
Atu1705 -1.0 -3.1 SEC-independent protein translocase protein compare
Atu2569 -1.0 -5.8 thiamine biosynthesis protein compare
Atu0115 -1.0 -1.2 hypothetical protein compare
Atu2368 -1.0 -1.2 hypothetical protein compare
Atu2821 -1.0 -2.5 transcriptional regulator, GntR family compare
Atu2554 -1.0 -2.1 lysyl-tRNA synthetase compare
Atu0773 -1.0 -3.8 surfeit 1 compare
Atu2376 -1.0 -0.8 hypothetical protein compare
Atu3727 -0.9 -3.9 hypothetical protein compare
Atu2115 -0.9 -4.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2439 -0.9 -1.4 hypothetical protein compare
Atu4450 -0.9 -5.6 sugar ABC transporter ATPase compare
Atu3697 -0.9 -3.5 ATP-dependent protease LA 2 compare
Atu0405 -0.9 -6.8 long-chain-fatty-acid-CoA-ligase compare
Atu2555 -0.9 -3.5 L-lysine 2,3-aminomutase compare
Atu2035 -0.9 -4.9 acetolactate synthase, small subunit compare
Atu4449 -0.9 -5.3 sorbitol/mannitol ABC transporter permease compare
Atu1445 -0.9 -2.7 two component sensor kinase compare
Atu1258 -0.9 -4.2 ATP-dependent Clp protease, proteolytic subunit compare
Atu0190 -0.8 -4.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0533 -0.8 -1.9 putative inhibitor of septum formation compare
Atu4841 -0.8 -5.8 DeoR family transcriptional regulator compare
Atu0026 -0.8 -0.8 hypothetical protein compare
Atu0030 -0.8 -1.4 phosphocarrier protein HPr compare
Atu2472 -0.8 -1.3 hypothetical protein compare
Atu3496 -0.8 -2.2 hypothetical protein compare
Atu4053 -0.8 -0.8 succinoglycan biosynthesis protein compare
Atu2484 -0.8 -1.5 hypothetical protein compare
Atu3337 -0.8 -4.7 LacI family transcriptional regulator compare
Atu1462 -0.8 -5.0 glycine cleavage system protein P2 compare
Atu3663 -0.8 -0.9 hypothetical protein compare
Atu3183 -0.8 -0.9 hypothetical protein compare
Atu2209 -0.8 -2.3 pyrroline-5-carboxylate reductase compare
Atu0101 -0.7 -2.0 cytochrome c compare
Atu1463 -0.7 -3.9 glycine cleavage system component H compare
Atu0422 -0.7 -1.0 ABC transporter, membrane spanning protein compare
Atu0357 -0.7 -4.4 phosphate starvation inducible protein compare
Atu4447 -0.7 -5.7 sorbitol ABC transporter substrate-binding protein compare
Atu8012 -0.7 -1.1 hypothetical protein compare
Atu1221 -0.7 -3.4 hypothetical protein compare
Atu1149 -0.7 -1.0 adenylate cyclase compare
Atu3763 -0.7 -1.0 hypothetical protein compare
Atu2441 -0.7 -2.1 RNA methylase compare
Atu0894 -0.7 -1.3 ABC transporter, membrane spanning protein compare
Atu5088 -0.7 -1.3 hypothetical protein compare
Atu0496 -0.7 -2.1 hypothetical protein compare
Atu1983 -0.6 -2.7 hypothetical protein compare
Atu0565 -0.6 -1.4 hypothetical protein compare
Atu0501 -0.6 -5.1 acyl-CoA dehydrogenase compare
Atu1667 -0.6 -1.3 hypothetical protein compare
Atu0694 -0.6 -3.7 inositol monophosphatase family protein compare
Atu4501 -0.6 -4.7 hypothetical protein compare
Atu1522 -0.6 -3.6 transcriptional regulator, LacI family compare
Atu6165 -0.6 -0.7 hypothetical protein compare
Atu0971 -0.6 -1.9 two component sensor kinase compare
Atu3226 -0.6 -3.0 GntR family transcriptional regulator compare
Atu8143 -0.6 -2.3 hypothetical protein compare
Atu1546 -0.6 -2.7 transcriptional regulator, MerR family compare
Atu2267 -0.6 -3.0 hypothetical protein compare
Atu5102 -0.6 -2.7 hypothetical protein compare
Atu1078 -0.6 -1.2 hypothetical protein compare
Atu2432 -0.6 -0.8 hypothetical protein compare
Atu0319 -0.6 -0.9 ubiquinone biosynthesis protein compare
Atu5114 -0.6 -1.3 hypothetical protein compare
Atu1336 -0.6 -1.9 hypothetical protein compare
Atu0976 -0.6 -1.4 cycL protein compare
Atu3744 -0.6 -3.4 ABC transporter permease compare
Atu1717 -0.6 -3.6 long-chain fatty acid transport protein compare
Atu1364 -0.6 -2.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1468 -0.6 -3.4 hypothetical protein compare
Atu1124 -0.6 -2.4 hypothetical protein compare
Atu0718 -0.6 -1.1 hypothetical protein compare
Atu4176 -0.5 -2.3 hypothetical protein compare
Atu2207 -0.5 -1.2 two component sensor kinase compare
Atu0107 -0.5 -1.1 hypothetical protein compare
Atu1223 -0.5 -1.0 hypothetical protein compare
Atu2787 -0.5 -0.8 hypothetical protein compare
Atu1847 -0.5 -1.1 hypothetical protein compare
Atu2073 -0.5 -2.4 membrane protein compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source D-Arabinose in Agrobacterium fabrum C58

For carbon source D-Arabinose across organisms