Experiment set2IT005 for Agrobacterium fabrum C58

Compare to:

L-ascorbate carbon source

200 most important genes:

  gene name fitness t score description  
Atu4086 -6.4 -10.7 gluconate 5-dehydrogenase compare
Atu3754 -6.4 -7.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4087 -6.0 -14.0 zinc-binding dehydrogenase compare
Atu0195 -5.9 -11.3 gluconokinase compare
Atu1463 -5.9 -9.8 glycine cleavage system component H compare
Atu4691 -5.9 -16.1 2-hydroxyacid dehydrogenase compare
Atu1464 -5.8 -6.5 glycine cleavage system T protein, aminomethyltransferase compare
Atu1526 -5.8 -11.7 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu4072 -5.6 -3.3 nodulation protein N compare
Atu4085 -5.5 -11.1 2-hydroxy-3-oxopropionate reductase compare
Atu0038 -5.5 -6.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1075 -5.3 -8.9 amidophosphoribosyltransferase compare
Atu1462 -5.2 -14.9 glycine cleavage system protein P2 compare
Atu1845 -5.1 -5.8 phosphoribosylformylglycinamidine synthase I compare
Atu1140 -5.1 -3.9 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2791 -5.1 -10.3 3-isopropylmalate dehydrogenase compare
Atu1141 -5.0 -6.8 Phosphoribosylglycinamide synthetase compare
Atu0043 -5.0 -3.4 imidazoleglycerol-phosphate dehydratase compare
Atu1456 -5.0 -13.7 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu0017 -5.0 -4.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1687 -4.9 -14.5 anthranilate phosphoribosyltransferase compare
Atu1844 -4.9 -4.7 Phosphoribosylformylglycinamidine synthetase compare
Atu0486 -4.9 -6.0 dihydroorotate dehydrogenase compare
Atu1359 -4.9 -1.7 dnaK deletion suppressor protein compare
Atu3755 -4.9 -6.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0041 -4.9 -3.3 glutamine amidotransferase compare
Atu1850 -4.8 -5.8 phosphoribosylformylglycinamidine synthetase II compare
Atu0039 -4.8 -3.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu0678 -4.8 -8.6 histidyl-tRNA synthetase compare
Atu4687 -4.8 -15.9 amino acid ABC transporter substrate-binding protein compare
Atu2718 -4.8 -10.6 homoserine O-succinyltransferase compare
Atu3783 -4.8 -16.9 glutamate synthase subunit beta compare
Atu4690 -4.7 -12.3 amino acid ABC transporter ATPase/permease compare
Atu2264 -4.7 -15.4 2-isopropylmalate synthase compare
Atu0400 -4.7 -6.4 orotate phosphoribosyltransferase compare
Atu0399 -4.7 -8.5 dihydroorotase compare
Atu2726 -4.7 -23.6 pyruvate carboxylase compare
Atu2036 -4.7 -17.4 acetolactate synthase III, large subunit compare
Atu0298 -4.6 -9.9 orotidine 5 compare
Atu4688 -4.6 -13.8 amino acid ABC transporter permease compare
Atu1904 -4.6 -7.1 transcriptional regulator compare
Atu2015 -4.6 -13.9 aminotransferase compare
Atu4689 -4.6 -11.9 amino acid ABC transporter permease compare
Atu0432 -4.6 -11.6 O-succinylhomoserine sulfhydrylase compare
Atu2709 -4.5 -21.1 3-isopropylmalate dehydratase, large subunit compare
Atu0537 -4.5 -9.6 histidinol dehydrogenase compare
Atu3707 -4.5 -4.9 phosphoserine aminotransferase compare
Atu2737 -4.5 -11.0 oxidoredutase compare
Atu0099 -4.4 -10.7 prephenate dehydratase compare
Atu0647 -4.4 -7.3 phosphoribosylamine--glycine ligase compare
Atu3731 -4.4 -11.6 5-formyltetrahydrofolate cyclo-ligase compare
Atu1308 -4.4 -7.8 aspartate carbamoyl transferase catalytic subunit compare
Atu1454 -4.3 -6.8 siroheme synthase compare
Atu2289 -4.3 -20.6 anthranilate synthase component I and II compare
Atu4773 -4.3 -1.9 two component response regulator compare
Atu1205 -4.3 -13.3 threonine dehydratase compare
Atu3784 -4.3 -23.7 glutamate synthase large subunit compare
Atu0322 -4.3 -9.9 enoyl CoA hydratase compare
Atu2790 -4.2 -2.9 3-isopropylmalate dehydratase, small subunit compare
Atu2155 -4.2 -19.8 methionine synthase compare
Atu3482 -4.2 -10.4 pantoate--beta-alanine ligase compare
Atu2205 -4.2 -5.5 transcriptional regulator, MarR family compare
Atu4502 -4.2 -11.9 cobalamin synthesis protein compare
Atu1307 -4.1 -6.9 dihydroorotase compare
Atu1446 -4.1 -3.4 two component response regulator compare
Atu0679 -4.0 -6.1 ATP phosphoribosyltransferase compare
Atu3885 -3.9 -10.2 inositol monophosphatase compare
Atu1750 -3.9 -5.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu1688 -3.9 -5.9 indole-3-glycerol-phosphate synthase compare
Atu4743 -3.8 -11.6 LacI family transcriptional regulator compare
Atu2614 -3.8 -10.1 hypothetical protein compare
Atu3483 -3.8 -9.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu3616 -3.8 -13.3 hypothetical protein compare
Atu2722 -3.7 -8.5 porin compare
Atu4711 -3.7 -8.5 two component sensor kinase compare
Atu0029 -3.7 -7.6 S-adenosylhomocysteine hydrolase compare
Atu3739 -3.6 -3.9 phosphoglycerate kinase compare
Atu0047 -3.6 -15.9 malate synthase G compare
Atu0977 -3.6 -5.9 serine protease DO-like protease compare
Atu1455 -3.6 -7.4 hypothetical protein compare
Atu4674 -3.5 -12.8 GntR family transcriptional regulator compare
Atu0062 -3.4 -11.7 transcriptional regulator, ROK family compare
Atu0641 -3.3 -4.8 hypothetical protein compare
Atu3226 -3.3 -10.4 GntR family transcriptional regulator compare
Atu1592 -3.2 -5.8 hypothetical protein compare
Atu4477 -3.2 -12.0 TetR family transcriptional regulator compare
Atu1339 -3.2 -5.3 ribonuclease E compare
Atu2548 -3.0 -15.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3486 -3.0 -4.0 DeoR family transcriptional regulator compare
Atu0926 -2.9 -6.3 hypothetical protein compare
Atu1686 -2.9 -14.1 peptidyl-prolyl cis-trans isomerse D compare
Atu1285 -2.9 -9.0 metal dependent hydrolase compare
Atu3963 -2.8 -10.5 GntR family transcriptional regulator compare
Atu0687 -2.8 -3.3 hypothetical protein compare
Atu0040 -2.8 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu6138 -2.8 -10.1 Repressor of the acc and arc operons compare
Atu4077 -2.8 -11.8 glycogen branching protein compare
Atu2174 -2.7 -10.1 hypothetical protein compare
Atu3997 -2.7 -16.2 biotin synthetase compare
Atu0723 -2.7 -2.6 FAD dependent oxidoreductase compare
Atu3999 -2.7 -4.3 dithiobiotin synthetase compare
Atu0361 -2.6 -2.4 transcriptional regulator compare
Atu4000 -2.6 -16.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu0098 -2.6 -14.7 mutT/nudix family protein compare
Atu2746 -2.6 -4.2 hypothetical protein compare
Atu0601 -2.5 -10.1 oxidoreductase compare
Atu3706 -2.5 -9.6 D-3-phosphoglycerate dehydrogenase compare
Atu0422 -2.4 -3.1 ABC transporter, membrane spanning protein compare
Atu6114 -2.4 -2.8 hypothetical protein compare
Atu2710 -2.4 -8.7 hypothetical protein compare
Atu3998 -2.4 -12.2 8-amino-7-oxononanoate synthase compare
Atu3162 -2.4 -12.7 LacI family transcriptional regulator compare
Atu4001 -2.4 -7.6 3-oxoacyl-ACP synthase compare
Atu0533 -2.4 -3.2 putative inhibitor of septum formation compare
Atu1030 -2.3 -2.2 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2803 -2.3 -4.1 Cobalamin biosynthesis associated protein compare
Atu1588 -2.3 -8.0 homoserine dehydrogenase compare
Atu3075 -2.3 -9.0 TetR family transcriptional regulator compare
Atu3505 -2.3 -10.1 3-hydroxyisobutyryl-CoA hydrolase compare
Atu2127 -2.3 -8.7 L-carnitine dehydratase compare
Atu3780 -2.2 -8.1 hypothetical protein compare
Atu0931 -2.2 -9.6 penicillin binding protein compare
Atu3219 -2.2 -14.0 dihydroxy-acid dehydratase compare
Atu1175 -2.2 -2.1 hypothetical protein compare
Atu0421 -2.2 -2.1 ABC transporter, membrane spanning protein compare
Atu4364 -2.1 -9.8 LacI family transcriptional regulator compare
Atu0346 -2.1 -4.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1056 -2.1 -8.0 hypothetical protein compare
Atu0188 -2.1 -3.6 ABC transporter, membrane spanning protein (peptide) compare
Atu2738 -2.0 -2.6 nucleoside-diphosphate-sugar epimerase compare
Atu3469 -2.0 -3.8 phosphoglyceromutase compare
Atu0971 -2.0 -4.7 two component sensor kinase compare
Atu5125 -2.0 -4.5 GntR family transcriptional regulator compare
Atu5142 -2.0 -2.6 hypothetical protein compare
Atu3886 -1.9 -6.6 lysophospholipase compare
Atu4501 -1.9 -8.1 hypothetical protein compare
Atu3888 -1.9 -8.0 hypothetical protein compare
Atu6098 -1.9 -1.1 transcriptional regulator, HTH family compare
Atu2831 -1.9 -5.3 glucose inhibited division protein A compare
Atu0479 -1.9 -6.7 ABC transporter, substrate binding protein (amino acid) compare
Atu0602 -1.9 -9.4 glutamine synthetase compare
Atu3779 -1.8 -7.8 lytic murein transglycosylase compare
Atu0590 -1.8 -8.0 transcriptional regulator repressor compare
Atu8161 -1.8 -2.0 hypothetical protein compare
Atu0925 -1.8 -3.4 hypothetical protein compare
Atu1054 -1.8 -4.8 hypothetical protein compare
Atu4530 -1.8 -7.6 TetR family transcriptional regulator compare
Atu0846 -1.8 -4.9 transcriptional regulator, MarR family compare
Atu1748 -1.8 -8.6 NIFU-like protein compare
Atu3290 -1.8 -8.9 phosphomethylpyrimidine kinase compare
Atu0014 -1.8 -9.1 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
Atu0401 -1.8 -5.8 fructokinase compare
Atu4514 -1.8 -3.2 RpiR family transcriptional regulator compare
Atu2832 -1.8 -2.9 tRNA modification GTPase compare
Atu1705 -1.7 -4.0 SEC-independent protein translocase protein compare
Atu1589 -1.7 -6.5 aminotransferase, class I compare
Atu1021 -1.7 -2.8 outer membrane protein compare
Atu8115 -1.7 -4.0 Hypothetical Protein compare
Atu2192 -1.7 -1.8 hypothetical protein compare
Atu3288 -1.7 -6.8 hydroxyethylthiazole kinase compare
Atu1134 -1.7 -7.7 hypothetical protein compare
Atu1126 -1.7 -5.1 molybdopterin converting factor, large subunit compare
Atu3289 -1.7 -5.3 thiamine-phosphate pyrophosphorylase compare
Atu2569 -1.6 -9.1 thiamine biosynthesis protein compare
Atu0503 -1.6 -10.4 enoyl-CoA hydratase compare
Atu1577 -1.6 -4.6 ABC transporter, substrate binding protein (amino acid) compare
Atu2010 -1.6 -9.0 GGDEF family protein compare
Atu3732 -1.6 -5.7 hemolysin compare
Atu0328 -1.6 -8.4 heat-inducible transcription repressor compare
Atu2808 -1.6 -7.5 cobyric acid synthase compare
Atu1028 -1.6 -2.8 hypothetical protein compare
Atu0074 -1.6 -8.1 molybdopterin biosynthesis protein compare
Atu4160 -1.6 -5.1 RNA polymerase sigma factor compare
Atu4019 -1.6 -7.2 two component response regulator compare
Atu1774 -1.6 -5.5 ABC transporter, substrate binding protein (peptide) compare
Atu1419 -1.6 -6.7 transcriptional regulator, GntR family compare
Atu1578 -1.5 -7.2 ABC transporter, membrane spanning protein (amino acid) compare
Atu1690 -1.5 -7.0 molybdopterin biosynthesis protein compare
Atu2795 -1.5 -6.5 cobalamin biosynthetic protein compare
Atu2802 -1.5 -6.9 precorrin-8X methylmutase compare
Atu2428 -1.5 -8.9 exopolysaccharide production protein PssB compare
Atu2267 -1.5 -7.9 hypothetical protein compare
Atu1695 -1.5 -9.4 molybdenum cofactor biosynthesis protein A compare
Atu0876 -1.5 -2.1 superoxide dismutase compare
Atu5443 -1.5 -4.2 TetR family transcriptional regulator compare
Atu1572 -1.5 -6.0 hydrolase compare
Atu2796 -1.5 -5.9 precorrin-4 C11-methyltransferase compare
Atu0189 -1.5 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2207 -1.5 -3.5 two component sensor kinase compare
Atu2124 -1.4 -5.1 transcriptional regulator, ArsR family compare
Atu1380 -1.4 -6.7 zinc metallopeptidase compare
Atu0502 -1.4 -4.1 acetyl-CoA acetyltransferase compare
Atu2370 -1.4 -7.9 hypothetical protein compare
Atu1445 -1.4 -4.5 two component sensor kinase compare
Atu3634 -1.4 -3.2 penicillin-binding protein dacf precursor compare
Atu4096 -1.4 -6.3 nicotinate-nucleotide pyrophosphorylase compare
Atu2565 -1.4 -7.5 hypothetical protein compare
Atu2606 -1.4 -5.9 transcriptional regulator, GntR family compare
Atu1874 -1.4 -3.3 RecA protein compare
Atu0190 -1.3 -4.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare


Specific Phenotypes

For 77 genes in this experiment

For carbon source L-ascorbate in Agrobacterium fabrum C58

For carbon source L-ascorbate across organisms