Experiment set2IT004 for Agrobacterium fabrum C58

Compare to:

L-ascorbate carbon source

200 most important genes:

  gene name fitness t score description  
Atu1463 -6.8 -8.5 glycine cleavage system component H compare
Atu0486 -6.7 -6.5 dihydroorotate dehydrogenase compare
Atu1850 -6.5 -6.0 phosphoribosylformylglycinamidine synthetase II compare
Atu0400 -6.5 -6.3 orotate phosphoribosyltransferase compare
Atu1750 -6.3 -8.6 phosphoribosyl c-AMP cyclohydrolase compare
Atu0099 -6.1 -14.9 prephenate dehydratase compare
Atu2718 -6.1 -8.3 homoserine O-succinyltransferase compare
Atu0432 -6.0 -10.1 O-succinylhomoserine sulfhydrylase compare
Atu1075 -6.0 -9.2 amidophosphoribosyltransferase compare
Atu0017 -6.0 -4.1 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2791 -6.0 -9.1 3-isopropylmalate dehydrogenase compare
Atu0679 -5.9 -9.0 ATP phosphoribosyltransferase compare
Atu1462 -5.8 -15.4 glycine cleavage system protein P2 compare
Atu1308 -5.7 -8.2 aspartate carbamoyl transferase catalytic subunit compare
Atu2726 -5.6 -25.0 pyruvate carboxylase compare
Atu4691 -5.6 -13.8 2-hydroxyacid dehydrogenase compare
Atu2709 -5.5 -20.3 3-isopropylmalate dehydratase, large subunit compare
Atu1141 -5.5 -9.8 Phosphoribosylglycinamide synthetase compare
Atu2264 -5.5 -17.3 2-isopropylmalate synthase compare
Atu0038 -5.4 -6.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0298 -5.4 -9.8 orotidine 5 compare
Atu0399 -5.4 -8.9 dihydroorotase compare
Atu1307 -5.4 -6.6 dihydroorotase compare
Atu1205 -5.3 -15.4 threonine dehydratase compare
Atu3885 -5.3 -11.8 inositol monophosphatase compare
Atu1687 -5.2 -13.9 anthranilate phosphoribosyltransferase compare
Atu0678 -5.2 -7.2 histidyl-tRNA synthetase compare
Atu2036 -5.2 -17.6 acetolactate synthase III, large subunit compare
Atu4087 -5.2 -14.5 zinc-binding dehydrogenase compare
Atu0537 -5.2 -7.1 histidinol dehydrogenase compare
Atu1140 -5.2 -5.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2289 -5.1 -21.5 anthranilate synthase component I and II compare
Atu1464 -5.1 -7.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu1526 -5.0 -14.8 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu3754 -5.0 -7.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0041 -5.0 -3.4 glutamine amidotransferase compare
Atu3469 -4.9 -3.4 phosphoglyceromutase compare
Atu2205 -4.7 -8.0 transcriptional regulator, MarR family compare
Atu2015 -4.6 -13.0 aminotransferase compare
Atu4086 -4.6 -13.1 gluconate 5-dehydrogenase compare
Atu3731 -4.6 -11.1 5-formyltetrahydrofolate cyclo-ligase compare
Atu1844 -4.5 -4.5 Phosphoribosylformylglycinamidine synthetase compare
Atu3755 -4.4 -5.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3739 -4.4 -4.2 phosphoglycerate kinase compare
Atu1688 -4.4 -10.2 indole-3-glycerol-phosphate synthase compare
Atu3483 -4.3 -9.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu4773 -4.3 -2.1 two component response regulator compare
Atu0195 -4.2 -14.5 gluconokinase compare
Atu2737 -4.1 -11.5 oxidoredutase compare
Atu0039 -4.1 -2.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu3482 -4.1 -10.9 pantoate--beta-alanine ligase compare
Atu4711 -4.0 -11.6 two component sensor kinase compare
Atu3783 -4.0 -16.4 glutamate synthase subunit beta compare
Atu1446 -3.9 -4.6 two component response regulator compare
Atu3707 -3.9 -4.2 phosphoserine aminotransferase compare
Atu1456 -3.9 -15.4 sulfite reductase (NADPH) hemoprotein beta-component compare
Atu2155 -3.9 -21.0 methionine synthase compare
Atu0647 -3.9 -7.7 phosphoribosylamine--glycine ligase compare
Atu1030 -3.8 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1904 -3.6 -8.6 transcriptional regulator compare
Atu1339 -3.5 -5.0 ribonuclease E compare
Atu2790 -3.4 -2.4 3-isopropylmalate dehydratase, small subunit compare
Atu0977 -3.3 -5.2 serine protease DO-like protease compare
Atu1845 -3.2 -5.9 phosphoribosylformylglycinamidine synthase I compare
Atu0043 -3.1 -4.1 imidazoleglycerol-phosphate dehydratase compare
Atu1455 -3.1 -3.8 hypothetical protein compare
Atu2614 -3.1 -11.9 hypothetical protein compare
Atu0641 -3.0 -5.6 hypothetical protein compare
Atu1359 -3.0 -2.0 dnaK deletion suppressor protein compare
Atu1592 -3.0 -6.8 hypothetical protein compare
Atu0040 -2.9 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1454 -2.9 -11.3 siroheme synthase compare
Atu0047 -2.9 -18.4 malate synthase G compare
Atu3616 -2.9 -10.5 hypothetical protein compare
Atu4077 -2.8 -15.0 glycogen branching protein compare
Atu3706 -2.7 -8.5 D-3-phosphoglycerate dehydrogenase compare
Atu0322 -2.6 -5.7 enoyl CoA hydratase compare
Atu4502 -2.6 -10.2 cobalamin synthesis protein compare
Atu0029 -2.6 -8.7 S-adenosylhomocysteine hydrolase compare
Atu2174 -2.5 -8.7 hypothetical protein compare
Atu2722 -2.5 -11.8 porin compare
Atu3997 -2.5 -14.2 biotin synthetase compare
Atu3486 -2.5 -3.8 DeoR family transcriptional regulator compare
Atu3784 -2.5 -17.6 glutamate synthase large subunit compare
Atu0361 -2.4 -3.1 transcriptional regulator compare
Atu3999 -2.4 -4.4 dithiobiotin synthetase compare
Atu4743 -2.3 -9.4 LacI family transcriptional regulator compare
Atu3226 -2.3 -8.3 GntR family transcriptional regulator compare
Atu1686 -2.3 -13.6 peptidyl-prolyl cis-trans isomerse D compare
Atu0026 -2.3 -1.5 hypothetical protein compare
Atu0723 -2.3 -2.6 FAD dependent oxidoreductase compare
Atu4477 -2.3 -10.0 TetR family transcriptional regulator compare
Atu2548 -2.3 -13.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu2710 -2.2 -8.1 hypothetical protein compare
Atu1175 -2.2 -2.5 hypothetical protein compare
Atu1285 -2.2 -9.4 metal dependent hydrolase compare
Atu0030 -2.1 -2.4 phosphocarrier protein HPr compare
Atu2020 -2.1 -6.3 transcriptional regulator, TetR family compare
Atu0188 -2.1 -5.1 ABC transporter, membrane spanning protein (peptide) compare
Atu1588 -2.1 -9.0 homoserine dehydrogenase compare
Atu0846 -2.1 -5.8 transcriptional regulator, MarR family compare
Atu4085 -2.1 -9.1 2-hydroxy-3-oxopropionate reductase compare
Atu1354 -2.0 -1.6 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1028 -2.0 -2.7 hypothetical protein compare
Atu0925 -2.0 -4.5 hypothetical protein compare
Atu0098 -2.0 -13.1 mutT/nudix family protein compare
Atu4000 -2.0 -15.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
Atu3998 -1.9 -12.4 8-amino-7-oxononanoate synthase compare
Atu4072 -1.9 -2.7 nodulation protein N compare
Atu2746 -1.9 -4.1 hypothetical protein compare
Atu0479 -1.9 -8.0 ABC transporter, substrate binding protein (amino acid) compare
Atu4690 -1.9 -8.6 amino acid ABC transporter ATPase/permease compare
Atu3468 -1.8 -1.5 hypothetical protein compare
Atu6114 -1.8 -3.2 hypothetical protein compare
Atu6138 -1.8 -6.8 Repressor of the acc and arc operons compare
Atu3162 -1.8 -9.0 LacI family transcriptional regulator compare
Atu4688 -1.8 -10.8 amino acid ABC transporter permease compare
Atu6098 -1.7 -0.9 transcriptional regulator, HTH family compare
Atu4689 -1.7 -7.1 amino acid ABC transporter permease compare
Atu0602 -1.7 -8.7 glutamine synthetase compare
Atu0971 -1.7 -5.0 two component sensor kinase compare
Atu0931 -1.7 -10.6 penicillin binding protein compare
Atu2738 -1.7 -1.9 nucleoside-diphosphate-sugar epimerase compare
Atu3963 -1.7 -6.2 GntR family transcriptional regulator compare
Atu0777 -1.7 -1.4 hypothetical protein compare
Atu4687 -1.7 -9.3 amino acid ABC transporter substrate-binding protein compare
Atu3075 -1.7 -8.2 TetR family transcriptional regulator compare
Atu0601 -1.7 -8.7 oxidoreductase compare
Atu3732 -1.7 -6.7 hemolysin compare
Atu1457 -1.6 -1.9 hypothetical protein compare
Atu1774 -1.6 -6.6 ABC transporter, substrate binding protein (peptide) compare
Atu0328 -1.6 -8.1 heat-inducible transcription repressor compare
Atu2127 -1.6 -7.0 L-carnitine dehydratase compare
Atu3779 -1.6 -8.7 lytic murein transglycosylase compare
Atu4364 -1.5 -7.4 LacI family transcriptional regulator compare
Atu1380 -1.5 -7.2 zinc metallopeptidase compare
Atu0190 -1.5 -6.7 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu1589 -1.5 -4.7 aminotransferase, class I compare
Atu0503 -1.5 -11.1 enoyl-CoA hydratase compare
Atu2428 -1.5 -8.4 exopolysaccharide production protein PssB compare
Atu1021 -1.4 -3.2 outer membrane protein compare
Atu5443 -1.4 -5.3 TetR family transcriptional regulator compare
Atu0502 -1.4 -5.0 acetyl-CoA acetyltransferase compare
Atu2489 -1.4 -5.6 hypothetical protein compare
Atu4001 -1.4 -5.7 3-oxoacyl-ACP synthase compare
Atu1572 -1.4 -5.6 hydrolase compare
Atu8115 -1.4 -4.8 Hypothetical Protein compare
Atu0926 -1.4 -5.2 hypothetical protein compare
Atu0014 -1.4 -6.9 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase compare
Atu0225 -1.4 -1.3 hypothetical protein compare
Atu2800 -1.4 -4.0 precorrin-3B C17-methyltransferase compare
Atu0272 -1.3 -5.1 transcriptional regulator, MarR family compare
Atu2267 -1.3 -5.7 hypothetical protein compare
Atu1445 -1.3 -4.8 two component sensor kinase compare
Atu3290 -1.3 -6.4 phosphomethylpyrimidine kinase compare
Atu1705 -1.3 -4.4 SEC-independent protein translocase protein compare
Atu8161 -1.3 -1.9 hypothetical protein compare
Atu2010 -1.3 -7.8 GGDEF family protein compare
Atu2569 -1.3 -8.2 thiamine biosynthesis protein compare
Atu1258 -1.3 -4.6 ATP-dependent Clp protease, proteolytic subunit compare
Atu3289 -1.3 -3.3 thiamine-phosphate pyrophosphorylase compare
Atu0501 -1.3 -7.8 acyl-CoA dehydrogenase compare
Atu0687 -1.3 -1.6 hypothetical protein compare
Atu3369 -1.2 -5.1 hypothetical protein compare
Atu5142 -1.2 -1.7 hypothetical protein compare
Atu4674 -1.2 -9.5 GntR family transcriptional regulator compare
Atu1522 -1.2 -7.2 transcriptional regulator, LacI family compare
Atu0893 -1.2 -4.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu1439 -1.2 -2.7 hypothetical protein compare
Atu0533 -1.2 -4.2 putative inhibitor of septum formation compare
Atu1134 -1.2 -7.2 hypothetical protein compare
Atu6165 -1.2 -1.1 hypothetical protein compare
Atu2665 -1.2 -7.8 transcriptional regulator, MarR family compare
Atu1126 -1.2 -5.4 molybdopterin converting factor, large subunit compare
Atu4030 -1.2 -5.8 sugar ABC transporter permease compare
Atu4232 -1.2 -5.2 GntR family transcriptional regulator compare
Atu3634 -1.2 -3.1 penicillin-binding protein dacf precursor compare
Atu0981 -1.2 -6.8 glutamate-ammonia-ligase adenylyltransferase compare
Atu3888 -1.2 -6.7 hypothetical protein compare
Atu4173 -1.1 -2.8 phosphoenolpyruvate-protein phosphotransferase compare
Atu1056 -1.1 -4.0 hypothetical protein compare
Atu0189 -1.1 -2.5 ABC transporter, membrane spanning protein (peptide) compare
Atu1577 -1.1 -5.6 ABC transporter, substrate binding protein (amino acid) compare
Atu1149 -1.1 -1.5 adenylate cyclase compare
Atu4033 -1.1 -6.7 sugar ABC transporter substrate-binding protein compare
Atu0842 -1.1 -1.8 hypothetical protein compare
Atu4514 -1.1 -4.3 RpiR family transcriptional regulator compare
Atu4501 -1.1 -6.1 hypothetical protein compare
Atu5540 -1.1 -0.9 hypothetical protein compare
Atu0631 -1.1 -6.0 molybdenum cofactor biosynthesis protein B compare
Atu0077 -1.1 -5.9 D-isomer specific 2-hydroxyacid dehydrogenases family protein compare
Atu2832 -1.1 -4.0 tRNA modification GTPase compare
Atu1054 -1.1 -6.3 hypothetical protein compare
Atu0590 -1.1 -6.0 transcriptional regulator repressor compare
Atu2370 -1.0 -6.5 hypothetical protein compare
Atu2650 -1.0 -6.5 glycerol-3-phosphate dehydrogenase compare
Atu3608 -1.0 -3.9 hypothetical protein compare
Atu3144 -1.0 -4.2 GntR family transcriptional regulator compare
Atu0074 -1.0 -6.3 molybdopterin biosynthesis protein compare
Atu1100 -1.0 -5.9 hypothetical protein compare


Specific Phenotypes

For 68 genes in this experiment

For carbon source L-ascorbate in Agrobacterium fabrum C58

For carbon source L-ascorbate across organisms