Experiment set2H43 for Kangiella aquimarina DSM 16071

Compare to:

marine broth

200 most detrimental genes:

  gene name fitness t score description  
B158DRAFT_2440 +1.6 14.7 Putative Zn-dependent protease, contains TPR repeats compare
B158DRAFT_1064 +1.4 10.5 DNA polymerase III, epsilon subunit, Proteobacterial compare
B158DRAFT_0195 +1.3 9.2 pilus retraction protein PilT compare
B158DRAFT_0107 +1.2 9.7 Predicted esterase compare
B158DRAFT_2130 +1.2 10.8 Membrane proteins related to metalloendopeptidases compare
B158DRAFT_1060 +1.1 9.8 FOG: LysM repeat compare
B158DRAFT_2355 +1.1 5.8 hypothetical protein compare
B158DRAFT_2381 +1.1 9.5 dCTP deaminase (EC 3.5.4.13) compare
B158DRAFT_0530 +1.1 8.1 cell division protein ZapA compare
B158DRAFT_1504 +1.1 8.4 Uncharacterized conserved protein compare
B158DRAFT_2351 +1.1 6.6 UDP-N-acetylglucosamine 2-epimerase compare
B158DRAFT_1774 +1.1 6.4 cell division protein ZipA compare
B158DRAFT_2451 +1.0 9.3 saccharopine dehydrogenase (NADP+, L-glutamate forming) (EC 1.5.1.10) compare
B158DRAFT_1505 +1.0 9.8 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
B158DRAFT_0008 +1.0 9.2 hypothetical protein compare
B158DRAFT_2343 +0.9 8.1 transcriptional activator RfaH compare
B158DRAFT_1480 +0.9 4.0 hypothetical protein compare
B158DRAFT_0759 +0.9 4.5 Tfp pilus assembly protein PilN compare
B158DRAFT_0758 +0.9 5.9 type IV pilus assembly protein PilM compare
B158DRAFT_0784 +0.9 7.3 transcriptional regulator, TetR family compare
B158DRAFT_2353 +0.9 6.0 nucleotide sugar dehydrogenase compare
B158DRAFT_1040 +0.9 2.3 tRNA_Val_TAC compare
B158DRAFT_0501 +0.9 3.7 hypothetical protein compare
B158DRAFT_2358 +0.8 6.8 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
B158DRAFT_2450 +0.8 7.1 Predicted carboxypeptidase compare
B158DRAFT_0069 +0.8 6.4 Uncharacterized membrane-associated protein compare
B158DRAFT_0496 +0.8 7.9 Uncharacterized conserved protein compare
B158DRAFT_2352 +0.8 1.4 hypothetical protein compare
B158DRAFT_0109 +0.8 2.5 ribosome-binding factor A compare
B158DRAFT_1369 +0.8 5.3 hypothetical protein compare
B158DRAFT_1042 +0.8 6.9 Parvulin-like peptidyl-prolyl isomerase compare
B158DRAFT_0783 +0.8 7.4 Phosphomannomutase compare
B158DRAFT_2457 +0.8 2.0 methionine repressor, MetJ compare
B158DRAFT_0843 +0.8 5.3 TIGR00153 family protein compare
B158DRAFT_1949 +0.8 7.0 N-acetylmuramoyl-L-alanine amidase compare
B158DRAFT_2344 +0.8 2.7 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
B158DRAFT_0418 +0.8 6.6 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
B158DRAFT_0681 +0.8 3.7 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides compare
B158DRAFT_1034 +0.8 5.2 ATP-dependent Clp protease, proteolytic subunit ClpP compare
B158DRAFT_0116 +0.8 6.7 NADH dehydrogenase subunit L (EC 1.6.5.3) compare
B158DRAFT_0398 +0.8 1.1 peptide deformylase compare
B158DRAFT_2479 +0.8 4.0 DNA-binding protein, YbaB/EbfC family compare
B158DRAFT_1444 +0.7 6.9 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
B158DRAFT_0187 +0.7 1.8 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
B158DRAFT_0842 +0.7 5.8 Phosphate/sulphate permeases compare
B158DRAFT_1807 +0.7 6.0 hypothetical protein compare
B158DRAFT_0808 +0.7 0.9 Uncharacterized distant relative of homeotic protein bithoraxoid compare
B158DRAFT_1590 +0.7 6.3 Uncharacterized protein conserved in bacteria compare
B158DRAFT_2357 +0.7 3.7 Glycosyltransferase compare
B158DRAFT_0123 +0.7 3.9 NADH dehydrogenase subunit E (EC 1.6.5.3) compare
B158DRAFT_0095 +0.7 5.2 apolipoprotein N-acyltransferase compare
B158DRAFT_0831 +0.7 6.5 Uncharacterized conserved protein compare
B158DRAFT_0440 +0.7 5.5 Cell division protein compare
B158DRAFT_0115 +0.7 5.7 NADH dehydrogenase subunit M (EC 1.6.5.3) compare
B158DRAFT_2069 +0.6 5.0 ribonuclease, Rne/Rng family compare
B158DRAFT_0108 +0.6 4.3 tRNA pseudouridine 55 synthase compare
B158DRAFT_2359 +0.6 4.4 bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family compare
B158DRAFT_1150 +0.6 2.5 type IV pilus biogenesis/stability protein PilW compare
B158DRAFT_0873 +0.6 4.8 DNA adenine methylase Dam compare
B158DRAFT_1920 +0.6 2.9 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
B158DRAFT_0761 +0.6 3.4 Tfp pilus assembly protein PilP compare
B158DRAFT_0183 +0.6 5.8 Chemotaxis protein histidine kinase and related kinases compare
B158DRAFT_0841 +0.6 3.2 SH3 domain protein compare
B158DRAFT_0533 +0.6 5.1 Xaa-Pro aminopeptidase compare
B158DRAFT_2186 +0.6 1.9 hypothetical protein compare
B158DRAFT_1546 +0.6 0.8 hypothetical protein compare
B158DRAFT_1033 +0.6 4.9 trigger factor compare
B158DRAFT_1041 +0.6 3.6 tRNA_Asp_GTC compare
B158DRAFT_0086 +0.6 4.0 iojap-like ribosome-associated protein compare
B158DRAFT_2313 +0.6 5.5 Exopolyphosphatase compare
B158DRAFT_0122 +0.6 5.1 NADH-quinone oxidoreductase, F subunit compare
B158DRAFT_0121 +0.6 5.2 NADH-quinone oxidoreductase, chain G compare
B158DRAFT_1800 +0.6 5.4 transcription-repair coupling factor compare
B158DRAFT_2472 +0.6 4.1 Uncharacterized protein conserved in archaea compare
B158DRAFT_0683 +0.6 5.2 Transcriptional accessory protein compare
B158DRAFT_2409 +0.6 2.4 lipoprotein signal peptidase compare
B158DRAFT_2360 +0.5 1.3 sulfate adenylyltransferase, small subunit compare
B158DRAFT_0760 +0.5 3.7 Tfp pilus assembly protein PilO compare
B158DRAFT_2267 +0.5 4.1 Uncharacterized conserved protein compare
B158DRAFT_0678 +0.5 3.8 TIGR02444 family protein compare
B158DRAFT_1059 +0.5 4.3 ABC-type Na+ efflux pump, permease component compare
B158DRAFT_1788 +0.5 1.5 hypothetical protein compare
B158DRAFT_0441 +0.5 4.6 cell division ATP-binding protein FtsE compare
B158DRAFT_0521 +0.5 4.7 PEP-CTERM-box response regulator transcription factor compare
B158DRAFT_2356 +0.5 2.6 Uncharacterized protein conserved in bacteria compare
B158DRAFT_0951 +0.5 1.3 Cytochrome C' compare
B158DRAFT_1341 +0.5 4.2 aminodeoxychorismate synthase, component I, bacterial clade compare
B158DRAFT_2334 +0.5 1.3 hypothetical protein compare
B158DRAFT_2200 +0.5 1.1 multisubunit sodium/proton antiporter, MrpC subunit (TC 2.A.63.1) compare
B158DRAFT_0127 +0.5 3.9 NADH dehydrogenase subunit A (EC 1.6.5.3) compare
B158DRAFT_2361 +0.5 0.8 sulfate adenylyltransferase, large subunit compare
B158DRAFT_0114 +0.5 4.6 NADH dehydrogenase subunit N (EC 1.6.5.3) compare
B158DRAFT_0520 +0.5 4.7 putative PEP-CTERM system histidine kinase compare
B158DRAFT_0118 +0.5 4.1 NADH dehydrogenase subunit J (EC 1.6.5.3) compare
B158DRAFT_0003 +0.5 3.8 Membrane proteins related to metalloendopeptidases compare
B158DRAFT_2196 +0.5 1.9 multisubunit sodium/proton antiporter, MrpE subunit (TC 2.A.63.1) compare
B158DRAFT_1952 +0.5 2.6 RNA chaperone Hfq compare
B158DRAFT_0085 +0.5 3.0 rRNA large subunit m3Psi methyltransferase RlmH compare
B158DRAFT_1944 +0.5 3.7 ribosome small subunit-dependent GTPase A compare
B158DRAFT_2489 +0.5 0.9 hypothetical protein compare
B158DRAFT_0617 +0.5 2.6 transcription elongation factor GreA compare
B158DRAFT_2138 +0.5 3.8 type IV-A pilus assembly ATPase PilB compare
B158DRAFT_0125 +0.5 3.9 NADH dehydrogenase subunit C (EC 1.6.5.3) compare
B158DRAFT_1509 +0.5 1.1 Protein of unknown function (DUF2798). compare
B158DRAFT_0966 +0.5 2.9 FOG: FHA domain compare
B158DRAFT_2413 +0.5 2.4 prepilin-type N-terminal cleavage/methylation domain compare
B158DRAFT_1058 +0.5 2.8 ABC-type Na+ transport system, ATPase component compare
B158DRAFT_2417 +0.4 2.5 prepilin-type N-terminal cleavage/methylation domain compare
B158DRAFT_0982 +0.4 3.7 PAS domain S-box/diguanylate cyclase (GGDEF) domain compare
B158DRAFT_0937 +0.4 0.5 hypothetical protein compare
B158DRAFT_0715 +0.4 3.0 Signal transduction histidine kinase, nitrogen specific compare
B158DRAFT_0257 +0.4 1.7 conserved hypothetical metal-binding protein compare
B158DRAFT_0965 +0.4 3.8 Serine/threonine protein phosphatase compare
B158DRAFT_0313 +0.4 1.8 hypothetical protein compare
B158DRAFT_0186 +0.4 2.3 Chemotaxis signal transduction protein compare
B158DRAFT_0393 +0.4 3.2 Lauroyl/myristoyl acyltransferase compare
B158DRAFT_0007 +0.4 3.2 Integral membrane protein CcmA involved in cell shape determination compare
B158DRAFT_1291 +0.4 1.7 exodeoxyribonuclease III compare
B158DRAFT_0120 +0.4 3.6 NADH dehydrogenase subunit H (EC 1.6.5.3) compare
B158DRAFT_0184 +0.4 1.6 Methylase of chemotaxis methyl-accepting proteins compare
B158DRAFT_0946 +0.4 2.1 transcriptional regulator, BadM/Rrf2 family compare
B158DRAFT_0894 +0.4 1.3 phosphate uptake regulator, PhoU compare
B158DRAFT_1411 +0.4 1.1 hypothetical protein compare
B158DRAFT_0352 +0.4 3.5 ATP-dependent DNA helicase Rep (EC 3.6.1.-) compare
B158DRAFT_1989 +0.4 3.1 ribonuclease R compare
B158DRAFT_0117 +0.4 2.5 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
B158DRAFT_0210 +0.4 1.4 hypothetical protein compare
B158DRAFT_2202 +0.4 2.7 multisubunit sodium/proton antiporter, MrpD subunit (TC 2.A.63.1) compare
B158DRAFT_0336 +0.4 1.3 hypothetical protein compare
B158DRAFT_2541 +0.4 2.3 Protein of unknown function (DUF3579). compare
B158DRAFT_0987 +0.4 2.0 hypothetical protein compare
B158DRAFT_2210 +0.4 3.0 Periplasmic serine proteases (ClpP class) compare
B158DRAFT_0582 +0.4 3.1 TIGR00255 family protein compare
B158DRAFT_2421 +0.3 1.8 hypothetical protein compare
B158DRAFT_1243 +0.3 0.8 hypothetical protein compare
B158DRAFT_0376 +0.3 2.5 CAAX amino terminal protease family. compare
B158DRAFT_1790 +0.3 0.9 hypothetical protein compare
B158DRAFT_1333 +0.3 2.9 component of chlorite stress sensing system with B158DRAFT_1334 (DUF2063) (from data) compare
B158DRAFT_0902 +0.3 2.0 phosphate ABC transporter substrate-binding protein, PhoT family (TC 3.A.1.7.1) compare
B158DRAFT_1237 +0.3 2.0 hypothetical protein compare
B158DRAFT_1336 +0.3 2.8 5'-nucleotidase compare
B158DRAFT_1362 +0.3 1.4 transcriptional regulator, TraR/DksA family compare
B158DRAFT_2542 +0.3 1.2 Phosphatidylserine synthase compare
B158DRAFT_2420 +0.3 1.9 prepilin-type N-terminal cleavage/methylation domain compare
B158DRAFT_2253 +0.3 1.6 Acetyltransferases compare
B158DRAFT_1564 +0.3 2.9 amino acid carrier protein compare
B158DRAFT_2068 +0.3 2.2 MAF protein compare
B158DRAFT_0375 +0.3 1.8 hypothetical protein compare
B158DRAFT_0254 +0.3 2.8 Uncharacterized enzyme of heme biosynthesis compare
B158DRAFT_2284 +0.3 0.8 Septum formation initiator compare
B158DRAFT_0124 +0.3 2.7 NADH dehydrogenase subunit D (EC 1.6.5.3) compare
B158DRAFT_0915 +0.3 2.6 hypothetical protein compare
B158DRAFT_1580 +0.3 1.4 hypothetical protein compare
B158DRAFT_1413 +0.3 1.1 hypothetical protein compare
B158DRAFT_1648 +0.3 1.4 hypothetical protein compare
B158DRAFT_0705 +0.3 2.0 Membrane-bound metallopeptidase compare
B158DRAFT_1486 +0.3 2.4 Uncharacterized protein conserved in bacteria compare
B158DRAFT_0266 +0.3 2.4 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
B158DRAFT_1249 +0.3 1.3 Lactoylglutathione lyase and related lyases compare
B158DRAFT_1361 +0.3 2.3 Zn-dependent dipeptidase, microsomal dipeptidase homolog compare
B158DRAFT_2236 +0.3 2.4 [SSU ribosomal protein S18P]-alanine acetyltransferase (EC 2.3.1.128) compare
B158DRAFT_0917 +0.3 2.6 Sel1 repeat. compare
B158DRAFT_2416 +0.3 1.5 prepilin-type N-terminal cleavage/methylation domain compare
B158DRAFT_0471 +0.3 1.1 hypothetical protein compare
B158DRAFT_0845 +0.3 1.1 hypothetical protein compare
B158DRAFT_1906 +0.3 2.5 Response regulator containing a CheY-like receiver domain and a GGDEF domain compare
B158DRAFT_0921 +0.3 2.3 hypothetical protein compare
B158DRAFT_0009 +0.3 2.6 Chloride channel protein EriC compare
B158DRAFT_0135 +0.3 1.7 Cytochrome oxidase assembly factor compare
B158DRAFT_0473 +0.3 1.2 hypothetical protein compare
B158DRAFT_2412 +0.3 2.3 type IV pilus modification protein PilV compare
B158DRAFT_2028 +0.3 1.1 hypothetical protein compare
B158DRAFT_0907 +0.3 2.3 Predicted integral membrane protein compare
B158DRAFT_2448 +0.3 1.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
B158DRAFT_1746 +0.3 0.5 Tfp pilus assembly protein PilZ compare
B158DRAFT_0797 +0.3 1.7 Predicted endonuclease containing a URI domain compare
B158DRAFT_2110 +0.3 1.5 Protein of unknown function (DUF3016). compare
B158DRAFT_0532 +0.3 1.8 Uncharacterized protein conserved in bacteria compare
B158DRAFT_2415 +0.3 2.4 Tfp pilus assembly protein, tip-associated adhesin PilY1 compare
B158DRAFT_0126 +0.3 2.3 NADH-quinone oxidoreductase, B subunit compare
B158DRAFT_0830 +0.3 1.7 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
B158DRAFT_1831 +0.3 2.2 transcriptional regulator, TetR family compare
B158DRAFT_0453 +0.3 1.5 Protein of unknown function (DUF1329). compare
B158DRAFT_0024 +0.3 1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
B158DRAFT_0588 +0.3 2.4 ribonuclease PH compare
B158DRAFT_0255 +0.3 2.3 Uncharacterized enzyme of heme biosynthesis compare
B158DRAFT_2365 +0.3 1.9 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) compare
B158DRAFT_0457 +0.3 2.4 Zn-dependent oligopeptidases compare
B158DRAFT_2232 +0.3 2.2 transcriptional regulator, TetR family compare
B158DRAFT_1038 +0.2 2.3 ATP-dependent protease La compare
B158DRAFT_0846 +0.2 0.3 Colicin D. compare
B158DRAFT_0188 +0.2 1.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
B158DRAFT_1157 +0.2 2.1 Exodeoxyribonuclease VII large subunit (EC 3.1.11.6) compare
B158DRAFT_2091 +0.2 1.5 Uncharacterized protein conserved in bacteria compare
B158DRAFT_0994 +0.2 2.2 putative adhesin (DUF1302) (from data) compare
B158DRAFT_1123 +0.2 1.0 DNA-binding regulatory protein, YebC/PmpR family compare
B158DRAFT_1647 +0.2 1.3 hypothetical protein compare
B158DRAFT_0885 +0.2 2.2 excinuclease ABC, A subunit compare
B158DRAFT_2139 +0.2 1.4 Type II secretory pathway, component PulF compare
B158DRAFT_2195 +0.2 2.1 Predicted aminopeptidases compare


Specific Phenotypes

None in this experiment

For Kangiella aquimarina DSM 16071 in marine broth experiments