Experiment set2H4 for Kangiella aquimarina DSM 16071

Compare to:

marine broth with Nickel (II) chloride hexahydrate 1.25 mM

Group: stress
Media: marine_broth_2216 + Nickel (II) chloride hexahydrate (1.25 mM)
Culturing: Kang_ML4, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Jake on 3/12/2014
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 842 A1,A2

Specific Phenotypes

For 6 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Kangiella aquimarina DSM 16071

For stress Nickel (II) chloride hexahydrate across organisms

SEED Subsystems

Subsystem #Specific
Histidine Biosynthesis 2

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
3-(4-hydroxyphenyl)pyruvate biosynthesis 1 1 1
(5Z)-dodecenoate biosynthesis I 6 5 3
atromentin biosynthesis 2 1 1
L-tyrosine degradation II 2 1 1
L-phenylalanine biosynthesis I 3 3 1
(5Z)-dodecenoate biosynthesis II 6 4 2
L-tyrosine biosynthesis I 3 2 1
L-phenylalanine degradation II (anaerobic) 3 1 1
L-tyrosine degradation IV (to 4-methylphenol) 3 1 1
superpathway of unsaturated fatty acids biosynthesis (E. coli) 20 16 6
L-histidine biosynthesis 10 8 3
oleate biosynthesis IV (anaerobic) 14 10 4
superpathway of fatty acid biosynthesis I (E. coli) 16 12 4
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 12 9 3
gondoate biosynthesis (anaerobic) 4 3 1
L-tyrosine degradation III 4 2 1
L-phenylalanine degradation III 4 2 1
palmitate biosynthesis III 29 21 7
tetradecanoate biosynthesis (mitochondria) 25 17 6
superpathway of fatty acids biosynthesis (E. coli) 53 40 12
palmitate biosynthesis II (type II fatty acid synthase) 31 22 7
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 9 7 2
cis-vaccenate biosynthesis 5 4 1
L-tyrosine degradation I 5 4 1
8-amino-7-oxononanoate biosynthesis IV 5 3 1
fatty acid elongation -- saturated 5 3 1
superpathway of plastoquinol biosynthesis 5 2 1
4-hydroxybenzoate biosynthesis I (eukaryotes) 5 1 1
L-tyrosine degradation V (reductive Stickland reaction) 5 1 1
L-phenylalanine degradation VI (reductive Stickland reaction) 5 1 1
superpathway of fatty acid biosynthesis II (plant) 43 30 8
8-amino-7-oxononanoate biosynthesis I 11 8 2
anteiso-branched-chain fatty acid biosynthesis 34 17 6
even iso-branched-chain fatty acid biosynthesis 34 17 6
odd iso-branched-chain fatty acid biosynthesis 34 17 6
stearate biosynthesis II (bacteria and plants) 6 4 1
stearate biosynthesis IV 6 4 1
streptorubin B biosynthesis 34 15 5
biotin biosynthesis I 15 12 2
2-allylmalonyl-CoA biosynthesis 8 2 1
superpathway of aromatic amino acid biosynthesis 18 17 2
L-phenylalanine degradation IV (mammalian, via side chain) 9 2 1
superpathway of L-phenylalanine biosynthesis 10 10 1
superpathway of L-tyrosine biosynthesis 10 9 1
rosmarinic acid biosynthesis I 10 1 1
(S)-reticuline biosynthesis I 11 1 1
superpathway of rosmarinic acid biosynthesis 14 1 1
superpathway of histidine, purine, and pyrimidine biosynthesis 46 42 3
anaerobic aromatic compound degradation (Thauera aromatica) 27 1 1
superpathway of chorismate metabolism 59 41 2
mycolate biosynthesis 205 16 4
superpathway of mycolate biosynthesis 239 17 4