Experiment set29S187 for Pseudomonas simiae WCS417

Compare to:

LB with 6-methoxy-2(3H)-benzoxazolone 1.2 mM

200 most important genes:

  gene name fitness t score description  
PS417_22565 -1.8 -0.9 formyltetrahydrofolate deformylase compare
PS417_08125 -1.6 -0.5 prephenate dehydratase compare
PS417_00385 -1.4 -1.2 Fur family transcriptional regulator compare
PS417_06680 -1.3 -4.4 nuclease PIN compare
PS417_08090 -1.3 -1.2 3-oxoacyl-ACP reductase compare
PS417_03560 -1.2 -1.3 GTP-binding protein compare
PS417_16490 -1.2 -1.3 cell division protein FtsK compare
PS417_24615 -1.2 -0.9 hypothetical protein compare
PS417_27795 -1.2 -0.4 orotate phosphoribosyltransferase compare
PS417_23370 -1.1 -5.0 protoheme IX farnesyltransferase compare
PS417_23375 -1.1 -2.0 cytochrome C oxidase compare
PS417_07170 -1.0 -2.6 hypothetical protein compare
PS417_22520 -1.0 -1.6 histidine kinase compare
PS417_22570 -1.0 -0.8 H-NS histone compare
PS417_18425 -0.9 -2.1 sporulation protein compare
PS417_15250 -0.9 -3.5 DNA repair protein compare
PS417_06145 -0.9 -1.1 hypothetical protein compare
PS417_09590 -0.9 -4.0 membrane protein compare
PS417_23390 -0.9 -5.1 ubiquinol oxidase subunit II compare
PS417_01580 -0.9 -1.4 imidazole glycerol phosphate synthase compare
PS417_23380 -0.9 -2.3 cytochrome o ubiquinol oxidase subunit III compare
PS417_04965 -0.9 -2.3 hypothetical protein compare
PS417_05105 -0.8 -3.3 membrane protein compare
PS417_08540 -0.8 -1.6 RNA helicase compare
PS417_28080 -0.8 -6.5 phosphate ABC transporter permease compare
PS417_16715 -0.8 -2.0 DoxX family protein compare
PS417_23385 -0.8 -5.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_03525 -0.8 -1.6 hypothetical protein compare
PS417_23775 -0.8 -1.7 exodeoxyribonuclease V subunit beta compare
PS417_12525 -0.8 -2.8 hypothetical protein compare
PS417_22205 -0.8 -4.5 potassium transporter TrkH compare
PS417_15510 -0.8 -1.5 hypothetical protein compare
PS417_15255 -0.8 -1.3 serine/threonine protein kinase compare
PS417_22375 -0.8 -0.9 cold-shock protein compare
PS417_28070 -0.8 -3.7 phosphate ABC transporter ATP-binding protein compare
PS417_09440 -0.8 -1.6 MerR family transcriptional regulator compare
PS417_26990 -0.7 -0.6 RNA pyrophosphohydrolase compare
PS417_03260 -0.7 -0.6 5S ribosomal RNA compare
PS417_12735 -0.7 -1.8 peroxidase compare
PS417_04835 -0.7 -3.2 hemolysin D compare
PS417_06125 -0.7 -2.7 hypothetical protein compare
PS417_26645 -0.7 -2.1 chemotaxis protein compare
PS417_04050 -0.7 -1.8 peptide ABC transporter ATP-binding protein compare
PS417_04650 -0.7 -0.5 D-alanine--D-alanine ligase compare
PS417_23135 -0.7 -1.5 GTP-binding protein compare
PS417_22445 -0.7 -1.6 ATP-dependent DNA helicase RuvB compare
PS417_10405 -0.7 -1.0 filamentous hemagglutinin compare
PS417_27870 -0.7 -1.6 ATP-dependent DNA helicase RecG compare
PS417_11400 -0.7 -1.3 phosphoglycerate mutase compare
PS417_02485 -0.7 -1.6 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_03815 -0.7 -1.8 DNA transporter compare
PS417_10655 -0.7 -2.3 LuxR family transcriptional regulator compare
PS417_12915 -0.7 -2.9 DNA-binding protein compare
PS417_10040 -0.6 -0.9 MFS transporter compare
PS417_20915 -0.6 -3.5 hypothetical protein compare
PS417_00915 -0.6 -2.4 aminotransferase compare
PS417_11090 -0.6 -2.1 LacI family transcriptional regulator compare
PS417_25315 -0.6 -2.3 membrane protein compare
PS417_19190 -0.6 -2.4 BolA family transcriptional regulator compare
PS417_01715 -0.6 -1.2 hypothetical protein compare
PS417_06780 -0.6 -2.0 TetR family transcriptional regulator compare
PS417_11705 -0.6 -2.7 cyclic peptide transporter compare
PS417_04595 -0.6 -1.2 cell division protein MraZ compare
PS417_16050 -0.6 -1.1 energy transducer TonB compare
PS417_15770 -0.6 -1.2 pyridoxine 5'-phosphate oxidase compare
PS417_09545 -0.6 -1.6 aldehyde-activating protein compare
PS417_28085 -0.6 -3.9 phosphate-binding protein compare
PS417_03970 -0.6 -1.3 1-phosphofructokinase compare
PS417_00480 -0.6 -2.0 hypothetical protein compare
PS417_07470 -0.6 -1.3 hypothetical protein compare
PS417_16885 -0.6 -1.8 hypothetical protein compare
PS417_18185 -0.6 -2.8 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_20775 -0.6 -1.3 coproporphyrinogen III oxidase compare
PS417_19275 -0.6 -1.2 hypothetical protein compare
PS417_26465 -0.6 -2.0 hypothetical protein compare
PS417_20885 -0.6 -2.9 Xanthine dehydrogenase (EC 1.17.1.4) (from data) compare
PS417_10370 -0.6 -2.7 ATPase compare
PS417_22840 -0.6 -0.8 tRNA-Met compare
PS417_05045 -0.6 -2.9 acetamidase compare
PS417_01585 -0.6 -3.3 amino acid ABC transporter substrate-binding protein compare
PS417_06245 -0.6 -0.6 zinc metallopeptidase RseP compare
PS417_00080 -0.6 -3.2 potassium transporter peripheral membrane component compare
PS417_07695 -0.6 -2.8 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_22450 -0.6 -0.5 ATP-dependent DNA helicase RuvA compare
PS417_13885 -0.6 -1.8 chemotaxis protein CheY compare
PS417_14315 -0.6 -2.2 2,5-dioxovalerate dehydrogenase compare
PS417_28515 -0.6 -1.5 16S rRNA methyltransferase compare
PS417_00160 -0.6 -1.1 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_20030 -0.5 -1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_19270 -0.5 -1.4 hypothetical protein compare
PS417_00445 -0.5 -3.2 histidine kinase compare
PS417_06600 -0.5 -0.7 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_23105 -0.5 -1.1 hypothetical protein compare
PS417_21680 -0.5 -2.6 succinylglutamate desuccinylase compare
PS417_04435 -0.5 -3.4 uracil phosphoribosyltransferase compare
PS417_10995 -0.5 -1.6 GntR family transcriptional regulator compare
PS417_28050 -0.5 -1.2 hypothetical protein compare
PS417_07275 -0.5 -1.5 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_11670 -0.5 -1.8 multidrug transporter MATE compare
PS417_21065 -0.5 -1.4 3-methylitaconate isomerase compare
PS417_18730 -0.5 -2.1 ABC transporter permease compare
PS417_07945 -0.5 -1.3 hypothetical protein compare
PS417_09010 -0.5 -1.7 phosphohistidine phosphatase compare
PS417_14065 -0.5 -3.1 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_08740 -0.5 -1.2 ribose-phosphate pyrophosphokinase compare
PS417_23080 -0.5 -1.8 sugar ABC transporter ATPase compare
PS417_06200 -0.5 -2.5 protein-PII uridylyltransferase compare
PS417_18590 -0.5 -1.9 SAM-dependent methyltransferase compare
PS417_08045 -0.5 -1.0 uracil permease compare
PS417_21850 -0.5 -1.0 LysR family transcriptional regulator compare
PS417_12855 -0.5 -2.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_09600 -0.5 -2.8 glycosyl transferase family 1 compare
PS417_09330 -0.5 -1.6 NAD(P)H-quinone oxidoreductase compare
PS417_14175 -0.5 -2.5 ArsC family transcriptional regulator compare
PS417_10385 -0.5 -2.0 peroxiredoxin compare
PS417_18250 -0.5 -1.1 chemotaxis protein compare
PS417_04875 -0.5 -0.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_03115 -0.5 -2.5 pilus assembly protein compare
PS417_12015 -0.5 -2.1 phosphoglycerate mutase compare
PS417_06970 -0.5 -1.2 LysR family transcriptional regulator compare
PS417_26655 -0.5 -2.4 chemotaxis protein compare
PS417_23670 -0.5 -1.4 Muconate cycloisomerase (EC 5.5.1.1) (from data) compare
PS417_27290 -0.5 -1.1 hypothetical protein compare
PS417_26175 -0.5 -0.7 sarcosine oxidase subunit gamma compare
PS417_22945 -0.5 -1.2 phosphoribosylglycinamide formyltransferase compare
PS417_23770 -0.5 -0.6 exodeoxyribonuclease V subunit alpha compare
PS417_06960 -0.5 -2.7 membrane protein compare
PS417_04055 -0.5 -2.1 peptide transporter compare
PS417_08250 -0.5 -1.2 competence protein ComEA compare
PS417_15820 -0.5 -1.8 universal stress protein UspA compare
PS417_19765 -0.5 -3.3 flagellar hook-length control protein compare
PS417_25710 -0.5 -0.9 indole-3-glycerol-phosphate synthase compare
PS417_09585 -0.4 -3.0 acetyltransferase compare
PS417_10810 -0.4 -0.8 hypothetical protein compare
PS417_26100 -0.4 -2.3 amino acid ABC transporter compare
PS417_06100 -0.4 -0.9 SAM-dependent methyltransferase compare
PS417_22810 -0.4 -1.7 DNA base-flipping protein YbaZ compare
PS417_24085 -0.4 -1.4 protein RnfH compare
PS417_10095 -0.4 -1.2 hypothetical protein compare
PS417_24895 -0.4 -0.9 hypothetical protein compare
PS417_00155 -0.4 -1.7 2-dehydro-3-deoxygalactonokinase compare
PS417_14890 -0.4 -1.9 LysR family transcriptional regulator compare
PS417_09160 -0.4 -1.9 GNAT family acetyltransferase compare
PS417_01080 -0.4 -1.8 acyl-CoA dehydrogenase compare
PS417_13510 -0.4 -0.8 polyketide cyclase compare
PS417_04365 -0.4 -0.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_15610 -0.4 -2.1 GDP-mannose pyrophosphatase compare
PS417_26265 -0.4 -1.2 hypothetical protein compare
PS417_27510 -0.4 -1.8 disulfide bond formation protein B compare
PS417_01270 -0.4 -0.9 iron ABC transporter substrate-binding protein compare
PS417_18600 -0.4 -0.9 isopropylmalate isomerase compare
PS417_17490 -0.4 -1.2 ABC transporter ATP-binding protein compare
PS417_22705 -0.4 -1.6 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_18160 -0.4 -1.5 YeeE/YedE compare
PS417_18455 -0.4 -1.5 hypothetical protein compare
PS417_00685 -0.4 -2.4 hypothetical protein compare
PS417_09605 -0.4 -1.1 glycosyl transferase compare
PS417_22620 -0.4 -1.4 pyruvate kinase compare
PS417_10540 -0.4 -2.2 NAD-dependent deacetylase compare
PS417_16565 -0.4 -2.3 secretin compare
PS417_10305 -0.4 -1.1 hypothetical protein compare
PS417_00795 -0.4 -2.5 lipoprotein compare
PS417_06435 -0.4 -1.9 glutathione S-transferase compare
PS417_21495 -0.4 -2.0 lipoprotein compare
PS417_28295 -0.4 -1.8 glutamine synthetase compare
PS417_24345 -0.4 -1.5 ubiquinol oxidase subunit II compare
PS417_25790 -0.4 -1.1 aminoglycoside phosphotransferase compare
PS417_07245 -0.4 -0.9 2-deoxy-D-ribonate 3-dehydrogenase (from data) compare
PS417_01095 -0.4 -0.8 amino acid ABC transporter ATP-binding protein compare
PS417_09615 -0.4 -2.9 glycosyl transferase family 1 compare
PS417_27875 -0.4 -2.7 histidine kinase compare
PS417_06530 -0.4 -0.5 membrane protein compare
PS417_19095 -0.4 -1.1 hypothetical protein compare
PS417_22935 -0.4 -1.2 hypothetical protein compare
PS417_07035 -0.4 -2.8 uracil-DNA glycosylase compare
PS417_15705 -0.4 -1.4 nitrate reductase compare
PS417_26650 -0.4 -3.0 histidine kinase compare
PS417_18920 -0.4 -2.0 hypothetical protein compare
PS417_00660 -0.4 -1.2 DSBA oxidoreductase compare
PS417_01380 -0.4 -2.1 nucleotide cyclase compare
PS417_27835 -0.4 -2.3 endoribonuclease compare
PS417_23915 -0.4 -1.5 pantoate--beta-alanine ligase compare
PS417_26370 -0.4 -1.4 RNA helicase compare
PS417_12375 -0.4 -1.0 serine/threonine protein phosphatase compare
PS417_04500 -0.4 -0.9 hypothetical protein compare
PS417_17565 -0.4 -1.6 branched-chain amino acid aminotransferase compare
PS417_09325 -0.4 -1.2 peptidase S41 compare
PS417_13540 -0.4 -2.7 sodium:proton antiporter compare
PS417_03490 -0.4 -1.5 type III secretion system protein SsaR compare
PS417_20250 -0.4 -2.3 copper resistance protein CopC compare
PS417_11770 -0.4 -0.9 pyruvate dehydrogenase compare
PS417_11350 -0.4 -1.8 biopolymer transporter ExbB compare
PS417_21320 -0.4 -1.6 transcriptional regulator compare
PS417_19305 -0.4 -1.6 acireductone dioxygenase compare
PS417_04170 -0.4 -2.4 stringent starvation protein A compare
PS417_27315 -0.4 -0.8 hypothetical protein compare
PS417_15100 -0.4 -1.2 BatB protein compare
PS417_15860 -0.4 -2.4 chromate transporter compare
PS417_22305 -0.4 -2.5 histidine kinase compare
PS417_05830 -0.4 -0.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms