Experiment set29S186 for Pseudomonas simiae WCS417

Compare to:

LB with 6-methoxy-2(3H)-benzoxazolone 0.5 mM

200 most important genes:

  gene name fitness t score description  
PS417_22520 -2.7 -2.9 histidine kinase compare
PS417_04650 -1.8 -0.8 D-alanine--D-alanine ligase compare
PS417_21430 -1.6 -1.9 3-oxoacyl-ACP synthase compare
PS417_23375 -1.4 -2.8 cytochrome C oxidase compare
PS417_03560 -1.3 -1.4 GTP-binding protein compare
PS417_23770 -1.2 -1.3 exodeoxyribonuclease V subunit alpha compare
PS417_27795 -1.2 -0.4 orotate phosphoribosyltransferase compare
PS417_28070 -1.1 -5.7 phosphate ABC transporter ATP-binding protein compare
PS417_12855 -1.0 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26645 -1.0 -3.3 chemotaxis protein compare
PS417_22375 -1.0 -1.2 cold-shock protein compare
PS417_24745 -1.0 -2.9 gamma-glutamyl phosphate reductase compare
PS417_00385 -1.0 -1.0 Fur family transcriptional regulator compare
PS417_02485 -0.9 -2.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_21760 -0.9 -2.0 hypothetical protein compare
PS417_01095 -0.9 -1.7 amino acid ABC transporter ATP-binding protein compare
PS417_27870 -0.9 -2.0 ATP-dependent DNA helicase RecG compare
PS417_24615 -0.9 -0.8 hypothetical protein compare
PS417_23370 -0.9 -3.7 protoheme IX farnesyltransferase compare
PS417_12735 -0.9 -2.2 peroxidase compare
PS417_24895 -0.8 -1.2 hypothetical protein compare
PS417_26990 -0.8 -0.9 RNA pyrophosphohydrolase compare
PS417_00915 -0.8 -3.4 aminotransferase compare
PS417_00180 -0.8 -1.7 tryptophan synthase subunit alpha compare
PS417_00485 -0.8 -2.1 ABC transporter permease compare
PS417_23390 -0.8 -6.0 ubiquinol oxidase subunit II compare
PS417_02435 -0.8 -4.4 flagellar motor protein MotA compare
PS417_23380 -0.8 -2.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_04875 -0.8 -1.7 molybdenum cofactor biosynthesis protein MoaE compare
PS417_04435 -0.8 -4.9 uracil phosphoribosyltransferase compare
PS417_06145 -0.8 -1.0 hypothetical protein compare
PS417_04585 -0.8 -0.9 hypothetical protein compare
PS417_28080 -0.8 -5.9 phosphate ABC transporter permease compare
PS417_00065 -0.7 -1.6 3-methyladenine DNA glycosylase compare
PS417_02560 -0.7 -1.5 23S rRNA methyltransferase compare
PS417_01605 -0.7 -0.9 phosphoglycerate mutase compare
PS417_27640 -0.7 -0.9 TetR family transcriptional regulator compare
PS417_23385 -0.7 -4.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_27875 -0.7 -4.7 histidine kinase compare
PS417_22450 -0.7 -0.7 ATP-dependent DNA helicase RuvA compare
PS417_01630 -0.7 -1.7 hypothetical protein compare
PS417_08540 -0.7 -1.4 RNA helicase compare
PS417_19825 -0.7 -5.9 ATPase AAA compare
PS417_23545 -0.7 -1.6 gamma-glutamyl kinase compare
PS417_21425 -0.7 -1.7 4-amino-4-deoxychorismate lyase compare
PS417_25225 -0.7 -1.8 MFS transporter compare
PS417_06780 -0.7 -2.1 TetR family transcriptional regulator compare
PS417_23775 -0.7 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_09615 -0.6 -3.2 glycosyl transferase family 1 compare
PS417_07615 -0.6 -2.7 TetR family transcriptional regulator compare
PS417_07470 -0.6 -1.2 hypothetical protein compare
PS417_09585 -0.6 -3.6 acetyltransferase compare
PS417_07640 -0.6 -2.3 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_02720 -0.6 -0.9 TetR family transcriptional regulator compare
PS417_16520 -0.6 -1.2 cold-shock protein compare
PS417_04800 -0.6 -2.2 alginate O-acetyltransferase compare
PS417_10320 -0.6 -2.5 hypothetical protein compare
PS417_03525 -0.6 -1.3 hypothetical protein compare
PS417_22005 -0.6 -2.9 epimerase compare
PS417_17780 -0.6 -1.5 Ais protein compare
PS417_28075 -0.6 -2.9 phosphate ABC transporter permease compare
PS417_03970 -0.6 -1.4 1-phosphofructokinase compare
PS417_19190 -0.6 -2.1 BolA family transcriptional regulator compare
PS417_09605 -0.6 -1.5 glycosyl transferase compare
PS417_00160 -0.6 -2.5 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_01390 -0.6 -4.8 PbsX family transcriptional regulator compare
PS417_18590 -0.6 -3.0 SAM-dependent methyltransferase compare
PS417_19270 -0.6 -1.9 hypothetical protein compare
PS417_14065 -0.6 -2.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_01620 -0.6 -2.0 preprotein translocase subunit SecB compare
PS417_05105 -0.6 -1.6 membrane protein compare
PS417_22815 -0.6 -2.0 permease compare
PS417_00445 -0.6 -3.6 histidine kinase compare
PS417_18370 -0.6 -2.0 hypothetical protein compare
PS417_26655 -0.6 -2.0 chemotaxis protein compare
PS417_24275 -0.6 -4.6 diguanylate phosphodiesterase compare
PS417_00870 -0.6 -1.9 hypothetical protein compare
PS417_12110 -0.6 -1.8 ATP-binding protein compare
PS417_14200 -0.6 -1.6 hypothetical protein compare
PS417_11570 -0.6 -2.1 ABC transporter permease compare
PS417_03935 -0.6 -2.1 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_09640 -0.5 -3.2 capsular biosynthesis protein compare
PS417_23135 -0.5 -1.0 GTP-binding protein compare
PS417_15510 -0.5 -1.1 hypothetical protein compare
PS417_01420 -0.5 -4.4 histidine kinase compare
PS417_28085 -0.5 -3.3 phosphate-binding protein compare
PS417_20090 -0.5 -4.5 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_26650 -0.5 -3.9 histidine kinase compare
PS417_23160 -0.5 -1.1 50S rRNA methyltransferase compare
PS417_09330 -0.5 -1.9 NAD(P)H-quinone oxidoreductase compare
PS417_06680 -0.5 -2.2 nuclease PIN compare
PS417_15885 -0.5 -1.4 GCN5 family acetyltransferase compare
PS417_19765 -0.5 -4.1 flagellar hook-length control protein compare
PS417_28190 -0.5 -2.7 amino acid ABC transporter substrate-binding protein compare
PS417_00390 -0.5 -2.4 ABC transporter substrate-binding protein compare
PS417_00220 -0.5 -1.5 hypothetical protein compare
PS417_28340 -0.5 -1.4 hypothetical protein compare
PS417_28220 -0.5 -1.6 LysR family transcriptional regulator compare
PS417_07560 -0.5 -1.2 universal stress protein UspA compare
PS417_05045 -0.5 -2.5 acetamidase compare
PS417_01415 -0.5 -3.7 glycosyl transferase family 1 compare
PS417_04050 -0.5 -1.2 peptide ABC transporter ATP-binding protein compare
PS417_06200 -0.5 -2.3 protein-PII uridylyltransferase compare
PS417_15255 -0.5 -1.3 serine/threonine protein kinase compare
PS417_09010 -0.5 -1.4 phosphohistidine phosphatase compare
PS417_01715 -0.5 -1.0 hypothetical protein compare
PS417_15250 -0.5 -2.1 DNA repair protein compare
PS417_08740 -0.5 -1.5 ribose-phosphate pyrophosphokinase compare
PS417_01410 -0.5 -2.8 transporter compare
PS417_18930 -0.5 -1.3 restriction endonuclease subunit S compare
PS417_00705 -0.5 -0.9 MarR family transcriptional regulator compare
PS417_27945 -0.5 -1.2 type VI secretion protein ImpA compare
PS417_09590 -0.5 -2.3 membrane protein compare
PS417_18185 -0.5 -2.5 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_25155 -0.5 -1.1 hypothetical protein compare
PS417_02780 -0.5 -2.9 DNA-binding protein compare
PS417_16490 -0.5 -0.7 cell division protein FtsK compare
PS417_11120 -0.5 -1.6 UDP pyrophosphate phosphatase compare
PS417_19335 -0.5 -2.2 isochorismatase compare
PS417_16715 -0.5 -1.3 DoxX family protein compare
PS417_28515 -0.5 -1.2 16S rRNA methyltransferase compare
PS417_17960 -0.5 -1.7 LysR family transcriptional regulator compare
PS417_20690 -0.5 -2.1 chemotaxis protein compare
PS417_01395 -0.5 -4.0 biofilm formation protein PelB compare
PS417_10305 -0.5 -1.1 hypothetical protein compare
PS417_18425 -0.5 -1.2 sporulation protein compare
PS417_16720 -0.5 -0.9 membrane protein compare
PS417_07770 -0.5 -1.3 hypothetical protein compare
PS417_18200 -0.5 -1.1 glyoxalase compare
PS417_26660 -0.5 -1.9 protein PilI compare
PS417_05325 -0.5 -1.1 fimbrial protein compare
PS417_04055 -0.4 -2.2 peptide transporter compare
PS417_15820 -0.4 -2.1 universal stress protein UspA compare
PS417_03795 -0.4 -3.2 pilus assembly protein PilX compare
PS417_09595 -0.4 -1.7 membrane protein compare
PS417_20250 -0.4 -2.5 copper resistance protein CopC compare
PS417_16475 -0.4 -1.7 camphor resistance protein CrcB compare
PS417_17125 -0.4 -1.4 transcriptional regulator compare
PS417_24525 -0.4 -1.0 nuclease compare
PS417_22810 -0.4 -1.4 DNA base-flipping protein YbaZ compare
PS417_15705 -0.4 -1.7 nitrate reductase compare
PS417_20105 -0.4 -4.1 glycosyl transferase compare
PS417_19880 -0.4 -3.2 flagellar basal body L-ring protein compare
PS417_18445 -0.4 -2.4 glycerol-3-phosphatase compare
PS417_28375 -0.4 -2.2 membrane protein compare
PS417_03925 -0.4 -2.2 nicotinate-nucleotide pyrophosphorylase compare
PS417_22565 -0.4 -0.3 formyltetrahydrofolate deformylase compare
PS417_25790 -0.4 -1.5 aminoglycoside phosphotransferase compare
PS417_06635 -0.4 -0.7 ferredoxin compare
PS417_24125 -0.4 -1.5 hypothetical protein compare
PS417_24405 -0.4 -2.2 heme acquisition protein HasAp compare
PS417_12165 -0.4 -2.3 microcin ABC transporter ATP-binding protein compare
PS417_19350 -0.4 -2.3 GTP cyclohydrolase compare
PS417_05200 -0.4 -1.6 DNA recombination protein RecO compare
PS417_00795 -0.4 -2.4 lipoprotein compare
PS417_08365 -0.4 -0.8 hypothetical protein compare
PS417_17095 -0.4 -1.4 spore coat protein compare
PS417_05570 -0.4 -2.2 DeoR faimly transcriptional regulator compare
PS417_24885 -0.4 -1.2 transcriptional regulator compare
PS417_05980 -0.4 -3.1 chemotaxis protein CheA compare
PS417_02805 -0.4 -1.0 urease subunit gamma compare
PS417_09620 -0.4 -3.0 lipopolysaccharide biosynthesis protein compare
PS417_20095 -0.4 -3.7 hypothetical protein compare
PS417_14140 -0.4 -1.3 membrane protein compare
PS417_11510 -0.4 -1.1 AraC family transcriptional regulator compare
PS417_23915 -0.4 -1.6 pantoate--beta-alanine ligase compare
PS417_01850 -0.4 -1.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02880 -0.4 -0.2 copper chaperone compare
PS417_02440 -0.4 -1.3 flagellar motor protein MotB compare
PS417_20610 -0.4 -1.2 hypothetical protein compare
PS417_26265 -0.4 -1.2 hypothetical protein compare
PS417_28265 -0.4 -0.9 pyridoxamine kinase compare
PS417_26715 -0.4 -1.4 peptidase P60 compare
PS417_09705 -0.4 -1.5 hypothetical protein compare
PS417_26760 -0.4 -1.7 oxidase compare
PS417_00080 -0.4 -2.5 potassium transporter peripheral membrane component compare
PS417_23345 -0.4 -2.2 amino acid ABC transporter substrate-binding protein compare
PS417_27505 -0.4 -2.0 transcriptional regulator compare
PS417_27605 -0.4 -1.4 hypothetical protein compare
PS417_03385 -0.4 -0.8 flavin reductase compare
PS417_17805 -0.4 -1.0 microcin B17 processing protein McbC compare
PS417_15290 -0.4 -1.7 type VI secretion protein compare
PS417_20140 -0.4 -1.6 nucleoprotein/polynucleotide-associated enzyme compare
PS417_01760 -0.4 -1.9 imidazolonepropionase compare
PS417_00510 -0.4 -0.8 membrane protein compare
PS417_26340 -0.4 -2.1 betaine-aldehyde dehydrogenase compare
PS417_09600 -0.4 -1.9 glycosyl transferase family 1 compare
PS417_18920 -0.4 -2.0 hypothetical protein compare
PS417_10095 -0.4 -1.1 hypothetical protein compare
PS417_19275 -0.4 -0.8 hypothetical protein compare
PS417_21555 -0.4 -3.0 flagellar hook protein FlgE compare
PS417_25650 -0.4 -0.8 anhydro-N-acetylmuramic acid kinase compare
PS417_20100 -0.4 -3.0 hypothetical protein compare
PS417_09630 -0.4 -2.1 glycosyl transferase compare
PS417_11705 -0.4 -1.7 cyclic peptide transporter compare
PS417_09930 -0.4 -0.8 hypothetical protein compare
PS417_00545 -0.4 -1.4 hypothetical protein compare
PS417_15910 -0.4 -1.4 lysine transporter LysE compare
PS417_08135 -0.4 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02985 -0.4 -2.9 diguanylate cyclase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms