Experiment set29S140 for Pseudomonas simiae WCS417

Compare to:

LB with 6-methoxy-2(3H)-benzoxazolone 2.5 mM

200 most important genes:

  gene name fitness t score description  
PS417_22565 -3.1 -0.8 formyltetrahydrofolate deformylase compare
PS417_21430 -2.7 -1.6 3-oxoacyl-ACP synthase compare
PS417_23380 -2.6 -5.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_08090 -2.6 -0.9 3-oxoacyl-ACP reductase compare
PS417_27640 -2.3 -1.4 TetR family transcriptional regulator compare
PS417_23775 -2.2 -2.5 exodeoxyribonuclease V subunit beta compare
PS417_23370 -2.1 -3.5 protoheme IX farnesyltransferase compare
PS417_06375 -2.1 -0.5 deoxycytidine triphosphate deaminase compare
PS417_00045 -2.0 -1.4 glycerol acyltransferase compare
PS417_23385 -2.0 -7.2 cytochrome o ubiquinol oxidase subunit I compare
PS417_28070 -2.0 -4.4 phosphate ABC transporter ATP-binding protein compare
PS417_22520 -1.9 -1.7 histidine kinase compare
PS417_06530 -1.8 -1.7 membrane protein compare
PS417_23375 -1.8 -3.1 cytochrome C oxidase compare
PS417_27135 -1.7 -0.9 glutamine synthetase compare
PS417_23390 -1.6 -7.3 ubiquinol oxidase subunit II compare
PS417_19885 -1.5 -3.8 flagellar basal body rod protein FlgG compare
PS417_09595 -1.5 -5.3 membrane protein compare
PS417_02980 -1.4 -1.6 chemotaxis protein compare
PS417_01965 -1.3 -1.7 fimbriae biosynthesis protein compare
PS417_28080 -1.3 -7.5 phosphate ABC transporter permease compare
PS417_27795 -1.3 -0.3 orotate phosphoribosyltransferase compare
PS417_02950 -1.3 -1.7 tRNA-dihydrouridine synthase B compare
PS417_20715 -1.2 -1.1 cytochrome Cbb3 compare
PS417_01400 -1.2 -2.7 hypothetical protein compare
PS417_24275 -1.2 -8.4 diguanylate phosphodiesterase compare
PS417_17035 -1.2 -1.5 Cro/Cl family transcriptional regulator compare
PS417_07305 -1.2 -1.2 3-beta hydroxysteroid dehydrogenase compare
PS417_19825 -1.2 -9.4 ATPase AAA compare
PS417_13050 -1.1 -1.9 N-acetylglucosamine-6-sulfatase compare
PS417_01405 -1.1 -2.3 sugar transporter compare
PS417_28085 -1.1 -6.0 phosphate-binding protein compare
PS417_26645 -1.1 -2.4 chemotaxis protein compare
PS417_17415 -1.1 -2.5 histidine kinase compare
PS417_01410 -1.0 -6.8 transporter compare
PS417_05535 -1.0 -1.0 Fis family transcriptional regulator compare
PS417_02485 -1.0 -2.2 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_08365 -1.0 -1.2 hypothetical protein compare
PS417_19305 -1.0 -2.6 acireductone dioxygenase compare
PS417_14655 -1.0 -1.3 lysine transporter LysE compare
PS417_10810 -1.0 -1.7 hypothetical protein compare
PS417_27875 -1.0 -3.9 histidine kinase compare
PS417_20030 -1.0 -1.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_01390 -1.0 -6.0 PbsX family transcriptional regulator compare
PS417_15135 -1.0 -1.3 hypothetical protein compare
PS417_02435 -1.0 -4.6 flagellar motor protein MotA compare
PS417_00445 -1.0 -4.3 histidine kinase compare
PS417_01420 -0.9 -5.4 histidine kinase compare
PS417_05815 -0.9 -3.5 recombinase RecA compare
PS417_00375 -0.9 -2.3 membrane protein compare
PS417_01395 -0.9 -7.3 biofilm formation protein PelB compare
PS417_22450 -0.9 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_06680 -0.9 -3.1 nuclease PIN compare
PS417_09640 -0.9 -4.5 capsular biosynthesis protein compare
PS417_13510 -0.9 -1.1 polyketide cyclase compare
PS417_07615 -0.9 -3.0 TetR family transcriptional regulator compare
PS417_16000 -0.9 -1.4 chemotaxis protein CheY compare
PS417_27675 -0.9 -2.1 xanthine phosphoribosyltransferase compare
PS417_17215 -0.9 -1.4 peptidylprolyl isomerase compare
PS417_21830 -0.9 -2.4 TetR family transcriptional regulator compare
PS417_05840 -0.9 -2.3 LuxR family transcriptional regulator compare
PS417_18425 -0.9 -1.5 sporulation protein compare
PS417_12515 -0.9 -2.4 lactate dehydrogenase compare
PS417_07575 -0.9 -2.3 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_17840 -0.9 -1.7 betaine-aldehyde dehydrogenase compare
PS417_22810 -0.9 -2.3 DNA base-flipping protein YbaZ compare
PS417_28075 -0.9 -3.6 phosphate ABC transporter permease compare
PS417_09615 -0.9 -2.7 glycosyl transferase family 1 compare
PS417_21630 -0.9 -1.0 magnesium transporter compare
PS417_13640 -0.9 -2.2 ribose ABC transporter permease compare
PS417_13300 -0.9 -1.7 short-chain dehydrogenase compare
PS417_22705 -0.9 -2.2 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_14925 -0.8 -3.0 2-methylcitrate dehydratase compare
PS417_11705 -0.8 -2.7 cyclic peptide transporter compare
PS417_08410 -0.8 -1.4 hypothetical protein compare
PS417_09600 -0.8 -3.1 glycosyl transferase family 1 compare
PS417_26770 -0.8 -1.2 tRNA (guanine-N7)-methyltransferase compare
PS417_00385 -0.8 -0.7 Fur family transcriptional regulator compare
PS417_01095 -0.8 -1.0 amino acid ABC transporter ATP-binding protein compare
PS417_26175 -0.8 -0.9 sarcosine oxidase subunit gamma compare
PS417_14880 -0.8 -2.1 thioesterase compare
PS417_21655 -0.8 -0.8 aspartate kinase compare
PS417_08025 -0.8 -1.2 acetylornithine aminotransferase compare
PS417_11555 -0.8 -1.6 (2Fe-2S)-binding protein compare
PS417_27085 -0.8 -2.4 AraC family transcriptional regulator compare
PS417_19765 -0.8 -5.1 flagellar hook-length control protein compare
PS417_18730 -0.8 -2.3 ABC transporter permease compare
PS417_22330 -0.8 -1.9 arginine deiminase compare
PS417_22990 -0.8 -0.9 iron dicitrate transport regulator FecR compare
PS417_19190 -0.8 -2.0 BolA family transcriptional regulator compare
PS417_09585 -0.7 -3.6 acetyltransferase compare
PS417_28050 -0.7 -1.6 hypothetical protein compare
PS417_26655 -0.7 -1.7 chemotaxis protein compare
PS417_08960 -0.7 -2.7 peroxiredoxin compare
PS417_00650 -0.7 -0.6 LysR family transcriptional regulator compare
PS417_07820 -0.7 -1.1 transposase compare
PS417_24135 -0.7 -1.5 hypothetical protein compare
PS417_06455 -0.7 -1.8 Fe(II)-dependent oxygenase compare
PS417_12740 -0.7 -1.5 secretion protein HlyD compare
PS417_12390 -0.7 -1.2 hypothetical protein compare
PS417_18490 -0.7 -1.6 hypothetical protein compare
PS417_23500 -0.7 -2.6 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
PS417_24650 -0.7 -1.0 membrane protein compare
PS417_04960 -0.7 -0.9 hypothetical protein compare
PS417_27295 -0.7 -2.9 hypothetical protein compare
PS417_11545 -0.7 -1.4 spermidine/putrescine ABC transporter substrate-binding protein compare
PS417_25765 -0.7 -1.3 transcriptional regulator compare
PS417_23715 -0.7 -2.3 cupin compare
PS417_19020 -0.7 -2.3 dimethylmenaquinone methyltransferase compare
PS417_13625 -0.7 -2.6 cytochrome B561 compare
PS417_15820 -0.7 -1.4 universal stress protein UspA compare
PS417_12840 -0.7 -1.7 TetR family transcriptional regulator compare
PS417_24620 -0.7 -2.0 hypothetical protein compare
PS417_22175 -0.7 -0.8 amino acid transporter LysE compare
PS417_05900 -0.7 -1.7 TetR family transcriptional regulator compare
PS417_26070 -0.7 -2.9 amino acid ABC transporter substrate-binding protein compare
PS417_00195 -0.7 -1.2 hypothetical protein compare
PS417_15705 -0.7 -1.2 nitrate reductase compare
PS417_19880 -0.7 -3.2 flagellar basal body L-ring protein compare
PS417_13455 -0.7 -1.3 alkaline proteinase inhibitor compare
PS417_05820 -0.7 -1.9 recombinase RecX compare
PS417_10675 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_15885 -0.7 -0.6 GCN5 family acetyltransferase compare
PS417_18150 -0.7 -1.6 chemotaxis protein CheY compare
PS417_26755 -0.6 -1.0 nucleoside-triphosphate diphosphatase compare
PS417_19200 -0.6 -2.3 fumarate hydratase compare
PS417_24710 -0.6 -2.3 lipoprotein compare
PS417_27205 -0.6 -1.8 adenylate cyclase compare
PS417_19725 -0.6 -2.0 flagellar biosynthesis protein FlhB compare
PS417_09590 -0.6 -1.8 membrane protein compare
PS417_10995 -0.6 -1.5 GntR family transcriptional regulator compare
PS417_08730 -0.6 -1.2 cytochrome C compare
PS417_03045 -0.6 -1.2 hypothetical protein compare
PS417_03920 -0.6 -1.5 dephospho-CoA kinase compare
PS417_03360 -0.6 -3.1 histidine kinase compare
PS417_16400 -0.6 -1.2 NAD(P)H-quinone oxidoreductase compare
PS417_12140 -0.6 -2.5 histidine kinase compare
PS417_15805 -0.6 -1.3 transporter compare
PS417_01040 -0.6 -2.2 RND transporter compare
PS417_20090 -0.6 -4.1 DegT/DnrJ/EryC1/StrS aminotransferase compare
PS417_07190 -0.6 -1.4 MFS transporter compare
PS417_06200 -0.6 -2.1 protein-PII uridylyltransferase compare
PS417_14295 -0.6 -1.7 AraC family transcriptional regulator compare
PS417_13895 -0.6 -2.0 chemotaxis protein CheB compare
PS417_23915 -0.6 -1.9 pantoate--beta-alanine ligase compare
PS417_21095 -0.6 -2.8 membrane protein compare
PS417_10225 -0.6 -1.9 chitinase compare
PS417_21585 -0.6 -3.5 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_21850 -0.6 -0.9 LysR family transcriptional regulator compare
PS417_09430 -0.6 -1.5 alpha/beta hydrolase compare
PS417_02280 -0.6 -0.4 GlcNAc-PI de-N-acetylase compare
PS417_27940 -0.6 -0.9 type VI secretion protein compare
PS417_21555 -0.6 -5.0 flagellar hook protein FlgE compare
PS417_23250 -0.6 -2.1 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_16520 -0.6 -1.0 cold-shock protein compare
PS417_22375 -0.6 -0.6 cold-shock protein compare
PS417_17805 -0.6 -1.4 microcin B17 processing protein McbC compare
PS417_04270 -0.6 -2.8 ribonuclease G compare
PS417_02270 -0.6 -1.3 carbamoyltransferase compare
PS417_00915 -0.6 -1.9 aminotransferase compare
PS417_06355 -0.6 -1.0 protein-L-isoaspartate O-methyltransferase compare
PS417_21495 -0.6 -1.9 lipoprotein compare
PS417_11615 -0.6 -1.1 urea ABC transporter ATP-binding protein compare
PS417_20280 -0.6 -2.4 mechanosensitive ion channel protein MscS compare
PS417_25790 -0.6 -1.1 aminoglycoside phosphotransferase compare
PS417_27910 -0.6 -1.4 PppA compare
PS417_09620 -0.6 -3.7 lipopolysaccharide biosynthesis protein compare
PS417_10445 -0.6 -2.0 LysR family transcriptional regulator compare
PS417_26695 -0.6 -0.7 uracil phosphoribosyltransferase compare
PS417_07170 -0.6 -1.3 hypothetical protein compare
PS417_10095 -0.6 -1.0 hypothetical protein compare
PS417_15285 -0.6 -0.7 type VI secretion protein compare
PS417_08950 -0.6 -1.9 DeoR faimly transcriptional regulator compare
PS417_12855 -0.6 -1.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_05165 -0.6 -1.1 cytosol aminopeptidase compare
PS417_24235 -0.6 -1.1 hypothetical protein compare
PS417_18595 -0.6 -1.5 3-isopropylmalate dehydratase compare
PS417_00390 -0.6 -1.8 ABC transporter substrate-binding protein compare
PS417_22765 -0.6 -1.9 InaA protein compare
PS417_27315 -0.5 -0.8 hypothetical protein compare
PS417_01415 -0.5 -3.6 glycosyl transferase family 1 compare
PS417_05250 -0.5 -2.3 hypothetical protein compare
PS417_06735 -0.5 -1.1 3-oxoadipate enol-lactonase compare
PS417_01945 -0.5 -1.8 nuclease compare
PS417_22205 -0.5 -2.5 potassium transporter TrkH compare
PS417_09635 -0.5 -2.8 mannose-1-phosphate guanylyltransferase compare
PS417_28315 -0.5 -1.5 zinc ABC transporter permease compare
PS417_00190 -0.5 -1.7 LysR family transcriptional regulator compare
PS417_06365 -0.5 -2.4 RNA polymerase sigma factor compare
PS417_01815 -0.5 -1.3 peptide ABC transporter ATP-binding protein compare
PS417_27590 -0.5 -2.6 hypothetical protein compare
PS417_00705 -0.5 -0.7 MarR family transcriptional regulator compare
PS417_13610 -0.5 -2.1 long-chain fatty acid--CoA ligase compare
PS417_26185 -0.5 -1.6 sarcosine oxidase subunit delta compare
PS417_09335 -0.5 -1.2 HAD family hydrolase compare
PS417_09420 -0.5 -0.9 LysR family transcriptional regulator compare
PS417_09625 -0.5 -1.4 sugar ABC transporter substrate-binding protein compare
PS417_00510 -0.5 -0.6 membrane protein compare
PS417_13965 -0.5 -1.3 acetoin utilization protein compare
PS417_03935 -0.5 -1.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms