Experiment set29S139 for Pseudomonas simiae WCS417

Compare to:

LB with 6-methoxy-2(3H)-benzoxazolone 1.2 mM

200 most important genes:

  gene name fitness t score description  
PS417_22565 -3.2 -0.8 formyltetrahydrofolate deformylase compare
PS417_10040 -2.5 -1.5 MFS transporter compare
PS417_21430 -2.3 -1.6 3-oxoacyl-ACP synthase compare
PS417_06375 -2.1 -0.5 deoxycytidine triphosphate deaminase compare
PS417_16490 -1.8 -1.2 cell division protein FtsK compare
PS417_01605 -1.7 -0.8 phosphoglycerate mutase compare
PS417_03260 -1.7 -0.9 5S ribosomal RNA compare
PS417_07170 -1.6 -3.1 hypothetical protein compare
PS417_08125 -1.6 -0.4 prephenate dehydratase compare
PS417_17215 -1.3 -2.0 peptidylprolyl isomerase compare
PS417_09210 -1.3 -1.2 TetR family transcriptional regulator compare
PS417_12855 -1.3 -1.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_04500 -1.3 -1.2 hypothetical protein compare
PS417_10810 -1.2 -1.7 hypothetical protein compare
PS417_27795 -1.2 -0.3 orotate phosphoribosyltransferase compare
PS417_12870 -1.1 -1.5 enoyl-CoA hydratase compare
PS417_11300 -1.1 -2.3 general secretion pathway protein GspE compare
PS417_23370 -1.1 -3.5 protoheme IX farnesyltransferase compare
PS417_07560 -1.1 -1.2 universal stress protein UspA compare
PS417_23375 -1.1 -2.0 cytochrome C oxidase compare
PS417_11400 -1.1 -1.8 phosphoglycerate mutase compare
PS417_21210 -1.1 -2.3 amidotransferase compare
PS417_05965 -1.1 -3.3 chemotaxis protein CheW compare
PS417_23490 -1.1 -0.9 dihydrofolate reductase compare
PS417_05815 -1.0 -2.4 recombinase RecA compare
PS417_23755 -1.0 -1.7 membrane protein compare
PS417_08365 -1.0 -1.1 hypothetical protein compare
PS417_01630 -1.0 -1.2 hypothetical protein compare
PS417_01405 -1.0 -1.5 sugar transporter compare
PS417_08155 -1.0 -0.5 integration host factor subunit beta compare
PS417_23385 -1.0 -4.6 cytochrome o ubiquinol oxidase subunit I compare
PS417_23775 -1.0 -1.0 exodeoxyribonuclease V subunit beta compare
PS417_06680 -1.0 -3.4 nuclease PIN compare
PS417_09440 -1.0 -1.3 MerR family transcriptional regulator compare
PS417_16160 -0.9 -1.1 ABC transporter substrate-binding protein compare
PS417_24615 -0.9 -0.4 hypothetical protein compare
PS417_28080 -0.9 -5.9 phosphate ABC transporter permease compare
PS417_06165 -0.9 -1.8 thiamine biosynthesis protein ThiF compare
PS417_20705 -0.9 -1.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_08730 -0.9 -1.5 cytochrome C compare
PS417_08540 -0.9 -1.3 RNA helicase compare
PS417_00370 -0.9 -0.9 hypothetical protein compare
PS417_15215 -0.9 -1.7 protein activator of alkane oxidation PraA compare
PS417_16555 -0.9 -0.8 cupin compare
PS417_27315 -0.9 -0.9 hypothetical protein compare
PS417_12520 -0.9 -1.1 hypothetical protein compare
PS417_28275 -0.9 -2.4 cobalamin biosynthesis protein CobW compare
PS417_11770 -0.9 -1.3 pyruvate dehydrogenase compare
PS417_02980 -0.9 -1.1 chemotaxis protein compare
PS417_09615 -0.9 -3.0 glycosyl transferase family 1 compare
PS417_28070 -0.9 -2.7 phosphate ABC transporter ATP-binding protein compare
PS417_27875 -0.9 -3.8 histidine kinase compare
PS417_02615 -0.9 -3.3 transglutaminase compare
PS417_00385 -0.8 -0.6 Fur family transcriptional regulator compare
PS417_27300 -0.8 -0.4 cell division protein ZapA compare
PS417_04305 -0.8 -0.8 aspartate ammonia-lyase compare
PS417_24775 -0.8 -1.6 dehydratase compare
PS417_01410 -0.8 -2.9 transporter compare
PS417_01400 -0.8 -0.7 hypothetical protein compare
PS417_00915 -0.8 -2.1 aminotransferase compare
PS417_25780 -0.8 -1.8 molecular chaperone DnaJ compare
PS417_10025 -0.8 -0.9 bacteriophage lambda NinG family protein compare
PS417_22350 -0.8 -1.3 Fis family transcriptional regulator compare
PS417_06335 -0.8 -1.6 S-formylglutathione hydrolase compare
PS417_19020 -0.8 -2.3 dimethylmenaquinone methyltransferase compare
PS417_22450 -0.8 -0.5 ATP-dependent DNA helicase RuvA compare
PS417_18800 -0.8 -1.6 hypothetical protein compare
PS417_00075 -0.8 -1.1 hypothetical protein compare
PS417_02360 -0.8 -2.4 nitrate reductase compare
PS417_26650 -0.8 -3.6 histidine kinase compare
PS417_19600 -0.8 -0.8 exonuclease compare
PS417_11705 -0.8 -2.0 cyclic peptide transporter compare
PS417_23380 -0.8 -1.5 cytochrome o ubiquinol oxidase subunit III compare
PS417_20950 -0.8 -1.8 hypothetical protein compare
PS417_15160 -0.8 -1.6 hypothetical protein compare
PS417_10320 -0.8 -2.1 hypothetical protein compare
PS417_05560 -0.7 -1.3 ABC transporter compare
PS417_12525 -0.7 -3.0 hypothetical protein compare
PS417_23150 -0.7 -1.7 Cro/Cl family transcriptional regulator compare
PS417_28075 -0.7 -2.4 phosphate ABC transporter permease compare
PS417_01565 -0.7 -1.7 imidazole glycerol phosphate synthase compare
PS417_15710 -0.7 -1.4 nitrate reductase compare
PS417_15540 -0.7 -0.9 NUDIX hydrolase compare
PS417_00995 -0.7 -1.3 alpha/beta hydrolase compare
PS417_11520 -0.7 -1.5 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_22570 -0.7 -0.5 H-NS histone compare
PS417_06780 -0.7 -1.9 TetR family transcriptional regulator compare
PS417_09595 -0.7 -2.8 membrane protein compare
PS417_09040 -0.7 -3.1 hypothetical protein compare
PS417_25225 -0.7 -1.6 MFS transporter compare
PS417_09625 -0.7 -2.1 sugar ABC transporter substrate-binding protein compare
PS417_14805 -0.7 -1.5 AraC family transcriptional regulator compare
PS417_01965 -0.7 -0.6 fimbriae biosynthesis protein compare
PS417_15875 -0.7 -1.5 LuxR family transcriptional regulator compare
PS417_20365 -0.7 -2.1 Cro/Cl family transcriptional regulator compare
PS417_21070 -0.7 -1.5 aconitate hydratase compare
PS417_08335 -0.7 -1.1 hypothetical protein compare
PS417_26685 -0.7 -0.9 hypothetical protein compare
PS417_15390 -0.7 -1.3 hypothetical protein compare
PS417_09600 -0.7 -2.5 glycosyl transferase family 1 compare
PS417_00380 -0.7 -1.0 zinc ABC transporter ATP-binding protein compare
PS417_09640 -0.7 -3.2 capsular biosynthesis protein compare
PS417_11380 -0.7 -1.2 peptidylprolyl isomerase compare
PS417_07575 -0.7 -1.8 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_03100 -0.7 -0.4 pilus assembly protein compare
PS417_24710 -0.7 -1.9 lipoprotein compare
PS417_00390 -0.7 -1.7 ABC transporter substrate-binding protein compare
PS417_22875 -0.7 -1.3 hypothetical protein compare
PS417_22205 -0.7 -3.5 potassium transporter TrkH compare
PS417_09585 -0.6 -3.2 acetyltransferase compare
PS417_21680 -0.6 -1.6 succinylglutamate desuccinylase compare
PS417_19825 -0.6 -5.6 ATPase AAA compare
PS417_07420 -0.6 -1.2 restriction endonuclease compare
PS417_13175 -0.6 -1.0 iron transporter compare
PS417_06600 -0.6 -0.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_01590 -0.6 -1.1 polysaccharide deacetylase compare
PS417_17645 -0.6 -0.9 RND transporter compare
PS417_05865 -0.6 -1.1 hypothetical protein compare
PS417_19765 -0.6 -5.4 flagellar hook-length control protein compare
PS417_17155 -0.6 -1.6 cytochrome B561 compare
PS417_03300 -0.6 -1.4 alanine acetyltransferase compare
PS417_15510 -0.6 -1.2 hypothetical protein compare
PS417_26275 -0.6 -1.3 glycine/betaine ABC transporter substrate-binding protein compare
PS417_13525 -0.6 -2.0 membrane protein compare
PS417_14400 -0.6 -1.1 hypothetical protein compare
PS417_10715 -0.6 -1.8 Cro/Cl family transcriptional regulator compare
PS417_17705 -0.6 -1.5 LacI family transcriptional regulator compare
PS417_22630 -0.6 -1.5 hypothetical protein compare
PS417_00975 -0.6 -0.9 hypothetical protein compare
PS417_08625 -0.6 -1.3 membrane protein compare
PS417_12620 -0.6 -1.2 SAM-dependent methyltransferase compare
PS417_18425 -0.6 -1.0 sporulation protein compare
PS417_26175 -0.6 -0.6 sarcosine oxidase subunit gamma compare
PS417_18420 -0.6 -1.6 deoxyribonuclease compare
PS417_18595 -0.6 -1.7 3-isopropylmalate dehydratase compare
PS417_14550 -0.6 -1.9 acetylpolyamine aminohydrolase compare
PS417_26660 -0.6 -1.8 protein PilI compare
PS417_25295 -0.6 -1.0 hypothetical protein compare
PS417_00495 -0.6 -1.3 ABC transporter permease compare
PS417_04435 -0.6 -3.5 uracil phosphoribosyltransferase compare
PS417_16815 -0.6 -1.5 acyl-CoA dehydrogenase compare
PS417_02485 -0.6 -1.0 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_07075 -0.6 -1.8 tricarboxylic transport membrane protein compare
PS417_12755 -0.6 -1.2 RND transporter compare
PS417_21065 -0.6 -1.1 3-methylitaconate isomerase compare
PS417_08500 -0.6 -2.2 LysR family transcriptional regulator compare
PS417_00445 -0.6 -3.5 histidine kinase compare
PS417_24155 -0.6 -0.4 ATP-binding protein compare
PS417_17630 -0.6 -0.7 RNA polymerase sigma factor compare
PS417_26835 -0.6 -1.9 3-mercaptopyruvate sulfurtransferase compare
PS417_24275 -0.6 -3.9 diguanylate phosphodiesterase compare
PS417_13605 -0.6 -1.9 short-chain dehydrogenase compare
PS417_12140 -0.6 -2.8 histidine kinase compare
PS417_12260 -0.6 -1.3 hypothetical protein compare
PS417_15090 -0.6 -1.4 hypothetical protein compare
PS417_27605 -0.6 -1.6 hypothetical protein compare
PS417_28145 -0.5 -1.3 AraC family transcriptional regulator compare
PS417_23390 -0.5 -2.6 ubiquinol oxidase subunit II compare
PS417_12820 -0.5 -1.4 hypothetical protein compare
PS417_11090 -0.5 -1.5 LacI family transcriptional regulator compare
PS417_23665 -0.5 -2.0 Muconolactone isomerase (EC 5.3.3.4) (from data) compare
PS417_13625 -0.5 -2.2 cytochrome B561 compare
PS417_24800 -0.5 -2.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_28295 -0.5 -1.4 glutamine synthetase compare
PS417_19580 -0.5 -1.9 acetyl-CoA carboxylase compare
PS417_09085 -0.5 -0.7 hypothetical protein compare
PS417_03560 -0.5 -0.5 GTP-binding protein compare
PS417_27290 -0.5 -0.6 hypothetical protein compare
PS417_22810 -0.5 -0.8 DNA base-flipping protein YbaZ compare
PS417_01425 -0.5 -1.5 AraC family transcriptional regulator compare
PS417_26645 -0.5 -1.0 chemotaxis protein compare
PS417_01855 -0.5 -1.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_13855 -0.5 -0.6 acetyl-CoA acetyltransferase compare
PS417_06400 -0.5 -1.8 succinylglutamate desuccinylase compare
PS417_13005 -0.5 -2.0 Asp/Glu racemase compare
PS417_01420 -0.5 -3.3 histidine kinase compare
PS417_13255 -0.5 -1.2 ABC transporter compare
PS417_27065 -0.5 -1.4 hypothetical protein compare
PS417_25315 -0.5 -1.7 membrane protein compare
PS417_00085 -0.5 -0.8 16S rRNA methyltransferase compare
PS417_27640 -0.5 -0.4 TetR family transcriptional regulator compare
PS417_08090 -0.5 -0.3 3-oxoacyl-ACP reductase compare
PS417_24460 -0.5 -1.2 hypothetical protein compare
PS417_12910 -0.5 -1.6 alanine racemase compare
PS417_06790 -0.5 -1.9 arabinose transporter permease compare
PS417_19880 -0.5 -3.1 flagellar basal body L-ring protein compare
PS417_11885 -0.5 -0.9 Inositol transport system sugar-binding protein (from data) compare
PS417_27910 -0.5 -1.1 PppA compare
PS417_04090 -0.5 -1.6 hypothetical protein compare
PS417_18605 -0.5 -2.0 LysR family transcriptional regulator compare
PS417_15800 -0.5 -2.4 photosynthetic protein synthase I compare
PS417_06025 -0.5 -1.0 alpha/beta hydrolase compare
PS417_24650 -0.5 -1.0 membrane protein compare
PS417_21740 -0.5 -2.4 ABC transporter for L-Arginine, permease component 1 (from data) compare
PS417_09140 -0.5 -1.6 biopolymer transporter ExbB compare
PS417_28050 -0.5 -0.8 hypothetical protein compare
PS417_03045 -0.5 -0.7 hypothetical protein compare
PS417_00675 -0.5 -1.5 iron dicitrate transport regulator FecR compare
PS417_00870 -0.5 -1.2 hypothetical protein compare
PS417_27675 -0.5 -1.3 xanthine phosphoribosyltransferase compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress 6-methoxy-2(3H)-benzoxazolone across organisms