Experiment set29S134 for Pseudomonas simiae WCS417

Compare to:

LB_noSalt with Sodium Chloride 1100 mM

200 most important genes:

  gene name fitness t score description  
PS417_24705 -3.6 -2.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_22565 -3.4 -0.9 formyltetrahydrofolate deformylase compare
PS417_19560 -3.3 -11.6 amino acid ABC transporter substrate-binding protein compare
PS417_21515 -3.2 -14.1 transcriptional regulator compare
PS417_26990 -3.1 -1.2 RNA pyrophosphohydrolase compare
PS417_16370 -2.9 -4.3 chemotaxis protein CheY compare
PS417_00455 -2.8 -3.6 hypothetical protein compare
PS417_24885 -2.6 -6.3 transcriptional regulator compare
PS417_10720 -2.6 -3.3 chemotaxis protein CheY compare
PS417_06680 -2.3 -5.9 nuclease PIN compare
PS417_07560 -2.3 -2.7 universal stress protein UspA compare
PS417_07120 -2.3 -4.8 RNA polymerase sigma-H factor compare
PS417_23375 -2.2 -3.9 cytochrome C oxidase compare
PS417_11445 -2.2 -6.7 enoyl-CoA hydratase compare
PS417_06375 -2.2 -0.6 deoxycytidine triphosphate deaminase compare
PS417_14785 -2.1 -11.2 glycine/betaine ABC transporter conserved
PS417_00450 -2.0 -5.6 chemotaxis protein CheY compare
PS417_02225 -2.0 -2.7 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_27245 -2.0 -3.9 aminotransferase DegT compare
PS417_21655 -1.9 -1.4 aspartate kinase compare
PS417_04650 -1.9 -0.7 D-alanine--D-alanine ligase compare
PS417_23380 -1.9 -3.1 cytochrome o ubiquinol oxidase subunit III compare
PS417_06245 -1.8 -1.9 zinc metallopeptidase RseP compare
PS417_05830 -1.8 -2.6 hypothetical protein compare
PS417_23950 -1.8 -1.1 polynucleotide phosphorylase/polyadenylase compare
PS417_26985 -1.8 -3.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_13800 -1.7 -4.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_23385 -1.7 -9.4 cytochrome o ubiquinol oxidase subunit I compare
PS417_00405 -1.7 -8.1 DNA polymerase I compare
PS417_04010 -1.7 -8.2 glycine/betaine ABC transporter ATP-binding protein conserved
PS417_11450 -1.6 -4.0 AraC family transcriptional regulator compare
PS417_20785 -1.6 -0.9 transcriptional regulator compare
PS417_21510 -1.6 -1.8 histidine kinase compare
PS417_02485 -1.6 -3.3 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_23025 -1.6 -5.8 murein transglycosylase compare
PS417_04020 -1.6 -8.2 glycine/betaine ABC transporter substrate-binding protein conserved
PS417_08125 -1.6 -0.4 prephenate dehydratase compare
PS417_24835 -1.5 -7.3 hypothetical protein compare
PS417_27435 -1.5 -7.2 polyphosphate kinase compare
PS417_23390 -1.5 -7.9 ubiquinol oxidase subunit II compare
PS417_04025 -1.5 -5.2 glycine/betaine ABC transporter permease conserved
PS417_03260 -1.5 -1.1 5S ribosomal RNA compare
PS417_27795 -1.5 -0.4 orotate phosphoribosyltransferase compare
PS417_05975 -1.5 -0.8 chemotaxis protein CheW compare
PS417_06365 -1.5 -6.3 RNA polymerase sigma factor compare
PS417_13795 -1.5 -7.1 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_23825 -1.4 -5.7 penicillin-binding protein compare
PS417_04015 -1.4 -6.0 choline ABC transporter permease conserved
PS417_09580 -1.4 -3.5 tyrosyl-trna synthetase compare
PS417_23370 -1.4 -3.8 protoheme IX farnesyltransferase compare
PS417_04590 -1.4 -5.1 methyltransferase compare
PS417_07615 -1.4 -4.2 TetR family transcriptional regulator compare
PS417_03705 -1.4 -3.9 2-alkenal reductase compare
PS417_04475 -1.4 -3.9 hypothetical protein compare
PS417_20610 -1.3 -3.0 hypothetical protein compare
PS417_20635 -1.3 -1.9 ABC transporter ATP-binding protein compare
PS417_27640 -1.3 -1.2 TetR family transcriptional regulator compare
PS417_02720 -1.3 -1.3 TetR family transcriptional regulator compare
PS417_19295 -1.3 -5.4 hypothetical protein compare
PS417_08230 -1.3 -2.4 lipopolysaccharide biosynthesis protein RfbH compare
PS417_18545 -1.3 -3.0 cell division protein compare
PS417_02280 -1.2 -1.5 GlcNAc-PI de-N-acetylase compare
PS417_16005 -1.2 -2.0 ATPase compare
PS417_13820 -1.2 -7.4 UDP-glucose 6-dehydrogenase compare
PS417_22520 -1.2 -1.3 histidine kinase compare
PS417_15095 -1.2 -3.6 hypothetical protein compare
PS417_27195 -1.2 -1.2 N-acetylglutamate synthase compare
PS417_22270 -1.2 -4.1 hypothetical protein compare
PS417_08245 -1.2 -2.0 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_23770 -1.2 -1.3 exodeoxyribonuclease V subunit alpha compare
PS417_22410 -1.2 -5.1 hypothetical protein compare
PS417_10645 -1.2 -7.4 magnesium ABC transporter ATPase compare
PS417_08685 -1.1 -1.9 flagellar hook-length control protein FliK compare
PS417_20645 -1.1 -7.9 membrane protein compare
PS417_18690 -1.1 -2.7 aromatic amino acid aminotransferase compare
PS417_22450 -1.1 -0.9 ATP-dependent DNA helicase RuvA compare
PS417_08185 -1.1 -4.3 glycosyl transferase compare
PS417_16555 -1.1 -1.4 cupin compare
PS417_13805 -1.1 -5.9 4-amino-4-deoxy-L-arabinose transferase compare
PS417_08545 -1.1 -2.0 aromatic ring-opening dioxygenase LigB compare
PS417_04115 -1.1 -3.8 alpha/beta hydrolase compare
PS417_20855 -1.0 -0.9 hypothetical protein compare
PS417_00445 -1.0 -4.7 histidine kinase compare
PS417_14590 -1.0 -2.1 LysR family transcriptional regulator compare
PS417_15090 -1.0 -2.6 hypothetical protein compare
PS417_21680 -1.0 -3.7 succinylglutamate desuccinylase compare
PS417_15075 -1.0 -5.4 NAD-glutamate dehydrogenase compare
PS417_15110 -1.0 -4.0 protein BatD compare
PS417_05785 -1.0 -3.6 tail protein compare
PS417_20030 -1.0 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_12805 -1.0 -6.3 glycogen branching protein compare
PS417_15100 -1.0 -1.5 BatB protein compare
PS417_24230 -1.0 -4.7 ATP-dependent protease compare
PS417_21695 -0.9 -2.6 succinylglutamate-semialdehyde dehydrogenase compare
PS417_19235 -0.9 -5.3 GNAT family acetyltransferase compare
PS417_05815 -0.9 -2.9 recombinase RecA compare
PS417_28050 -0.9 -1.7 hypothetical protein compare
PS417_20650 -0.9 -5.0 hypothetical protein compare
PS417_27295 -0.9 -3.0 hypothetical protein compare
PS417_08420 -0.9 -2.0 lipoprotein compare
PS417_15105 -0.9 -3.2 membrane protein compare
PS417_04865 -0.9 -2.1 molybdenum cofactor biosynthesis protein MoaC compare
PS417_22840 -0.9 -1.5 tRNA-Met compare
PS417_25270 -0.9 -2.4 NrdR family transcriptional regulator compare
PS417_19995 -0.9 -6.2 Long-chain fatty acid transport protein compare
PS417_02990 -0.9 -2.7 hypothetical protein compare
PS417_24265 -0.9 -4.3 ABC transporter ATP-binding protein compare
PS417_06770 -0.9 -2.5 multidrug transporter compare
PS417_24800 -0.9 -3.0 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_04800 -0.9 -2.2 alginate O-acetyltransferase compare
PS417_04875 -0.9 -1.4 molybdenum cofactor biosynthesis protein MoaE compare
PS417_04435 -0.9 -5.8 uracil phosphoribosyltransferase compare
PS417_15715 -0.9 -6.1 nitrate reductase compare
PS417_05530 -0.9 -3.2 membrane protein compare
PS417_25650 -0.9 -1.7 anhydro-N-acetylmuramic acid kinase compare
PS417_07140 -0.9 -1.0 peptidase M48 compare
PS417_14115 -0.9 -3.4 molybdate ABC transporter substrate-binding protein compare
PS417_13895 -0.8 -2.9 chemotaxis protein CheB compare
PS417_22205 -0.8 -4.9 potassium transporter TrkH compare
PS417_02950 -0.8 -2.5 tRNA-dihydrouridine synthase B compare
PS417_21420 -0.8 -6.5 aminodeoxychorismate lyase compare
PS417_20665 -0.8 -3.4 hypothetical protein compare
PS417_22250 -0.8 -1.9 pseudouridine synthase compare
PS417_22815 -0.8 -2.5 permease compare
PS417_05820 -0.8 -1.6 recombinase RecX compare
PS417_28325 -0.8 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_14125 -0.8 -2.7 molybdenum ABC transporter ATP-binding protein compare
PS417_27290 -0.8 -1.2 hypothetical protein compare
PS417_13905 -0.8 -4.7 chemotaxis protein CheY compare
PS417_10810 -0.8 -2.1 hypothetical protein compare
PS417_15705 -0.8 -1.0 nitrate reductase compare
PS417_17830 -0.8 -2.1 4-hydroxyphenylacetate isomerase compare
PS417_08190 -0.8 -6.1 membrane protein compare
PS417_03935 -0.8 -2.2 N-acetyl-anhydromuranmyl-L-alanine amidase compare
PS417_00535 -0.8 -1.4 Holliday junction resolvase compare
PS417_28075 -0.8 -3.3 phosphate ABC transporter permease compare
PS417_16980 -0.8 -3.8 exonuclease III compare
PS417_00945 -0.8 -2.4 sulfate ABC transporter ATP-binding protein compare
PS417_28070 -0.8 -2.7 phosphate ABC transporter ATP-binding protein compare
PS417_18945 -0.8 -2.7 endoribonuclease compare
PS417_12110 -0.8 -1.1 ATP-binding protein compare
PS417_09720 -0.8 -3.5 methyltransferase compare
PS417_08180 -0.8 -4.1 glycosyl transferase compare
PS417_00085 -0.8 -1.9 16S rRNA methyltransferase compare
PS417_24615 -0.8 -0.6 hypothetical protein compare
PS417_28265 -0.7 -0.8 pyridoxamine kinase compare
PS417_26695 -0.7 -1.0 uracil phosphoribosyltransferase compare
PS417_15400 -0.7 -1.4 hypothetical protein compare
PS417_00175 -0.7 -1.1 CigR compare
PS417_09420 -0.7 -2.0 LysR family transcriptional regulator compare
PS417_05300 -0.7 -4.9 glucose dehydrogenase compare
PS417_19490 -0.7 -1.7 mechanosensitive ion channel protein compare
PS417_06775 -0.7 -1.5 antibiotic transporter compare
PS417_28080 -0.7 -5.4 phosphate ABC transporter permease compare
PS417_18860 -0.7 -2.5 transcriptional regulator compare
PS417_05570 -0.7 -3.6 DeoR faimly transcriptional regulator compare
PS417_08165 -0.7 -4.9 UDP-glucose 4-epimerase compare
PS417_27690 -0.7 -2.8 XRE family transcriptional regulator compare
PS417_24460 -0.7 -2.0 hypothetical protein compare
PS417_19230 -0.7 -4.0 asparagine synthase compare
PS417_05790 -0.7 -2.8 hypothetical protein compare
PS417_21375 -0.7 -2.3 ADP-ribosylglycohydrolase compare
PS417_14120 -0.7 -4.2 molybdenum ABC transporter permease compare
PS417_05500 -0.7 -2.4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_00755 -0.7 -0.6 biofilm PGA synthesis protein PgaD compare
PS417_00080 -0.7 -4.6 potassium transporter peripheral membrane component compare
PS417_09705 -0.7 -1.9 hypothetical protein compare
PS417_20235 -0.7 -4.4 hypothetical protein compare
PS417_07275 -0.7 -1.7 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_12260 -0.7 -4.0 hypothetical protein compare
PS417_21000 -0.7 -1.2 CrfX protein compare
PS417_16920 -0.7 -2.0 multidrug RND transporter compare
PS417_24595 -0.7 -5.7 histidine kinase compare
PS417_04270 -0.7 -3.9 ribonuclease G compare
PS417_19075 -0.7 -3.5 ABC transporter ATP-binding protein compare
PS417_12015 -0.7 -1.8 phosphoglycerate mutase compare
PS417_11705 -0.7 -2.7 cyclic peptide transporter compare
PS417_08205 -0.7 -3.5 acetyltransferase compare
PS417_24785 -0.7 -2.0 nucleoside-diphosphate sugar epimerase compare
PS417_12745 -0.7 -3.0 multidrug transporter compare
PS417_26900 -0.7 -1.4 L-cystine transporter tcyP compare
PS417_08335 -0.7 -1.4 hypothetical protein compare
PS417_12355 -0.7 -1.3 magnesium chelatase compare
PS417_11400 -0.7 -0.9 phosphoglycerate mutase compare
PS417_14480 -0.7 -4.3 glycogen synthase compare
PS417_13425 -0.6 -1.1 cupin compare
PS417_24745 -0.6 -1.7 gamma-glutamyl phosphate reductase compare
PS417_10265 -0.6 -1.1 peptidase compare
PS417_16715 -0.6 -1.4 DoxX family protein compare
PS417_23150 -0.6 -2.6 Cro/Cl family transcriptional regulator compare
PS417_00525 -0.6 -5.0 hypothetical protein compare
PS417_18040 -0.6 -1.3 general secretion pathway protein GspN compare
PS417_17215 -0.6 -1.0 peptidylprolyl isomerase compare
PS417_21625 -0.6 -0.9 DNA-binding protein compare
PS417_02630 -0.6 -1.6 NAD synthetase compare
PS417_07170 -0.6 -1.3 hypothetical protein compare
PS417_04595 -0.6 -1.1 cell division protein MraZ compare
PS417_03965 -0.6 -3.5 fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components (from data) compare
PS417_27165 -0.6 -2.6 alkanesulfonate monooxygenase compare
PS417_26570 -0.6 -4.4 hemolysin III compare


Specific Phenotypes

For 9 genes in this experiment

For stress Sodium Chloride in Pseudomonas simiae WCS417

For stress Sodium Chloride across organisms