Experiment set29S128 for Pseudomonas simiae WCS417

Compare to:

Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days

200 most important genes:

  gene name fitness t score description  
PS417_16005 -6.1 -3.0 ATPase compare
PS417_23545 -4.3 -1.5 gamma-glutamyl kinase compare
PS417_02280 -3.5 -1.0 GlcNAc-PI de-N-acetylase compare
PS417_24745 -3.3 -1.8 gamma-glutamyl phosphate reductase compare
PS417_25710 -3.2 -1.1 indole-3-glycerol-phosphate synthase compare
PS417_23915 -3.1 -3.6 pantoate--beta-alanine ligase compare
PS417_24500 -3.0 -2.6 DEAD/DEAH box helicase compare
PS417_16475 -2.8 -2.7 camphor resistance protein CrcB compare
PS417_02975 -2.7 -2.5 3-dehydroquinate dehydratase compare
PS417_27195 -2.7 -0.6 N-acetylglutamate synthase compare
PS417_14065 -2.7 -9.2 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_12855 -2.6 -2.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_20635 -2.6 -1.1 ABC transporter ATP-binding protein compare
PS417_23805 -2.5 -4.8 acetolactate synthase 3 regulatory subunit compare
PS417_08220 -2.5 -1.0 epimerase compare
PS417_06150 -2.5 -3.4 SAM-dependent methlyltransferase compare
PS417_06530 -2.5 -0.9 membrane protein compare
PS417_22565 -2.4 -0.4 formyltetrahydrofolate deformylase compare
PS417_02415 -2.4 -3.6 phosphoserine phosphatase compare
PS417_13800 -2.4 -2.5 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_08185 -2.4 -5.0 glycosyl transferase compare
PS417_07640 -2.4 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_09010 -2.3 -1.9 phosphohistidine phosphatase compare
PS417_23810 -2.3 -9.5 acetolactate synthase 3 catalytic subunit compare
PS417_13510 -2.3 -0.9 polyketide cyclase compare
PS417_26370 -2.3 -3.2 RNA helicase compare
PS417_21575 -2.2 -6.4 chemotaxis protein compare
PS417_04050 -2.2 -1.8 peptide ABC transporter ATP-binding protein compare
PS417_22450 -2.2 -0.6 ATP-dependent DNA helicase RuvA compare
PS417_04595 -2.1 -1.0 cell division protein MraZ compare
PS417_01855 -2.1 -1.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_08335 -2.1 -1.4 hypothetical protein compare
PS417_21630 -2.1 -1.3 magnesium transporter compare
PS417_22520 -2.0 -0.9 histidine kinase compare
PS417_16490 -2.0 -0.7 cell division protein FtsK compare
PS417_06100 -2.0 -1.0 SAM-dependent methyltransferase compare
PS417_23800 -1.9 -8.0 ketol-acid reductoisomerase compare
PS417_25720 -1.8 -5.4 anthranilate synthase component II compare
PS417_03260 -1.8 -0.4 5S ribosomal RNA compare
PS417_23490 -1.8 -0.7 dihydrofolate reductase compare
PS417_25645 -1.8 -3.6 peptidase M23 compare
PS417_08245 -1.7 -1.1 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_15250 -1.7 -2.1 DNA repair protein compare
PS417_03455 -1.7 -1.2 type III secretion protein compare
PS417_04920 -1.7 -3.7 GntR family transcriptional regulator compare
PS417_26890 -1.7 -6.0 dihydroxy-acid dehydratase compare
PS417_26605 -1.7 -0.6 malonate decarboxylase subunit beta compare
PS417_01435 -1.7 -0.8 hypothetical protein compare
PS417_21480 -1.7 -0.8 23S rRNA pseudouridylate synthase compare
PS417_01565 -1.7 -3.0 imidazole glycerol phosphate synthase compare
PS417_18560 -1.7 -4.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_06635 -1.7 -1.0 ferredoxin compare
PS417_08545 -1.7 -1.2 aromatic ring-opening dioxygenase LigB compare
PS417_08540 -1.7 -1.0 RNA helicase compare
PS417_16855 -1.6 -1.4 cation:proton antiporter compare
PS417_19860 -1.6 -11.3 flagellar hook protein FlgL compare
PS417_21850 -1.6 -0.9 LysR family transcriptional regulator compare
PS417_24710 -1.6 -2.8 lipoprotein compare
PS417_19690 -1.5 -3.4 histidine kinase compare
PS417_22375 -1.5 -0.6 cold-shock protein compare
PS417_15495 -1.5 -4.8 FAD-dependent oxidoreductase compare
PS417_20650 -1.5 -5.9 hypothetical protein compare
PS417_04365 -1.5 -0.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_20645 -1.5 -7.6 membrane protein compare
PS417_23910 -1.5 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_23375 -1.5 -1.4 cytochrome C oxidase compare
PS417_19350 -1.5 -3.0 GTP cyclohydrolase compare
PS417_27585 -1.4 -1.1 diaminopimelate epimerase compare
PS417_06375 -1.4 -0.2 deoxycytidine triphosphate deaminase compare
PS417_19850 -1.4 -5.4 branched-chain alpha-keto acid dehydrogenase subunit E2 compare
PS417_08410 -1.4 -1.3 hypothetical protein compare
PS417_08170 -1.4 -4.7 capsular biosynthesis protein compare
PS417_08740 -1.4 -1.5 ribose-phosphate pyrophosphokinase compare
PS417_06895 -1.4 -1.8 DNA-binding protein compare
PS417_05595 -1.4 -5.7 ornithine carbamoyltransferase compare
PS417_08620 -1.4 -0.3 hypothetical protein compare
PS417_01575 -1.4 -2.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_16990 -1.4 -3.9 acyl-CoA dehydrogenase compare
PS417_25715 -1.4 -3.3 anthranilate phosphoribosyltransferase compare
PS417_12735 -1.4 -1.2 peroxidase compare
PS417_02270 -1.4 -1.7 carbamoyltransferase compare
PS417_23390 -1.4 -4.7 ubiquinol oxidase subunit II compare
PS417_00195 -1.4 -1.1 hypothetical protein compare
PS417_21655 -1.4 -0.6 aspartate kinase compare
PS417_26745 -1.4 -3.3 methionine biosynthesis protein MetW compare
PS417_08230 -1.4 -1.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_26175 -1.4 -0.6 sarcosine oxidase subunit gamma compare
PS417_17565 -1.4 -1.9 branched-chain amino acid aminotransferase compare
PS417_15115 -1.3 -2.8 exonuclease SbcD compare
PS417_19840 -1.3 -7.2 flagellar cap protein FliD compare
PS417_24100 -1.3 -5.0 transcriptional regulator PdhR compare
PS417_07620 -1.3 -0.3 beta-hexosaminidase compare
PS417_23575 -1.3 -1.7 hypothetical protein compare
PS417_20340 -1.3 -1.6 hypothetical protein compare
PS417_05025 -1.3 -1.1 maleylacetoacetate isomerase compare
PS417_24085 -1.3 -1.6 protein RnfH compare
PS417_03045 -1.3 -1.0 hypothetical protein compare
PS417_23995 -1.3 -0.5 preprotein translocase subunit SecG compare
PS417_26420 -1.3 -0.8 hypothetical protein compare
PS417_16825 -1.3 -2.5 membrane protein compare
PS417_19765 -1.3 -7.1 flagellar hook-length control protein compare
PS417_19955 -1.3 -0.8 hypothetical protein compare
PS417_27155 -1.3 -0.9 aliphatic sulfonates transport ATP-binding subunit compare
PS417_01270 -1.3 -1.1 iron ABC transporter substrate-binding protein compare
PS417_07170 -1.3 -1.5 hypothetical protein compare
PS417_04075 -1.3 -4.8 peptide ABC transporter substrate-binding protein compare
PS417_27135 -1.3 -0.4 glutamine synthetase compare
PS417_04305 -1.3 -0.8 aspartate ammonia-lyase compare
PS417_00185 -1.3 -1.3 tryptophan synthase subunit beta compare
PS417_07560 -1.3 -0.8 universal stress protein UspA compare
PS417_26730 -1.3 -0.3 pyrroline-5-carboxylate reductase compare
PS417_13730 -1.3 -1.5 hypothetical protein compare
PS417_16555 -1.3 -0.8 cupin compare
PS417_06200 -1.3 -4.3 protein-PII uridylyltransferase compare
PS417_08190 -1.3 -6.9 membrane protein compare
PS417_04170 -1.3 -3.2 stringent starvation protein A compare
PS417_08205 -1.3 -2.3 acetyltransferase compare
PS417_01560 -1.2 -1.0 imidazoleglycerol-phosphate dehydratase compare
PS417_20665 -1.2 -5.0 hypothetical protein compare
PS417_06680 -1.2 -2.8 nuclease PIN compare
PS417_09545 -1.2 -1.6 aldehyde-activating protein compare
PS417_19650 -1.2 -1.7 chemotaxis protein CheW compare
PS417_08685 -1.2 -0.9 flagellar hook-length control protein FliK compare
PS417_11230 -1.2 -1.4 hydroxyacid dehydrogenase compare
PS417_22445 -1.2 -1.2 ATP-dependent DNA helicase RuvB compare
PS417_27425 -1.2 -4.4 exopolyphosphatase compare
PS417_05160 -1.2 -0.7 DNA polymerase III subunit chi compare
PS417_12695 -1.2 -3.2 mannitol dehydrogenase compare
PS417_18600 -1.2 -1.6 isopropylmalate isomerase compare
PS417_23370 -1.2 -2.8 protoheme IX farnesyltransferase compare
PS417_15030 -1.2 -0.8 short-chain dehydrogenase compare
PS417_19675 -1.2 -2.2 chemotaxis protein CheY compare
PS417_07565 -1.2 -1.1 hypothetical protein compare
PS417_19660 -1.2 -2.2 cobalamin biosynthesis protein CobQ compare
PS417_14175 -1.2 -2.2 ArsC family transcriptional regulator compare
PS417_26990 -1.2 -0.4 RNA pyrophosphohydrolase compare
PS417_25725 -1.2 -5.2 anthranilate synthase component I compare
PS417_25315 -1.1 -2.2 membrane protein compare
PS417_20100 -1.1 -5.8 hypothetical protein compare
PS417_19730 -1.1 -3.1 flagellar biosynthesis protein FliR compare
PS417_01710 -1.1 -2.5 histidine utilization repressor compare
PS417_03310 -1.1 -4.3 carbonate dehydratase compare
PS417_09470 -1.1 -0.6 hypothetical protein compare
PS417_08225 -1.1 -3.2 acetolactate synthase compare
PS417_22705 -1.1 -1.4 glycerol-3-phosphate ABC transporter substrate-binding protein compare
PS417_27040 -1.1 -1.5 3-phosphoglycerate dehydrogenase compare
PS417_21430 -1.1 -0.6 3-oxoacyl-ACP synthase compare
PS417_05650 -1.1 -1.6 leucyl-tRNA synthetase compare
PS417_19865 -1.1 -7.1 flagellar hook protein FlgK compare
PS417_06600 -1.1 -0.5 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_28070 -1.1 -2.2 phosphate ABC transporter ATP-binding protein compare
PS417_21125 -1.1 -3.9 phosphoadenosine phosphosulfate reductase compare
PS417_18595 -1.1 -1.6 3-isopropylmalate dehydratase compare
PS417_00465 -1.1 -2.3 hypothetical protein compare
PS417_26060 -1.1 -1.4 DNA polymerase III subunit epsilon compare
PS417_19885 -1.1 -1.5 flagellar basal body rod protein FlgG compare
PS417_27315 -1.1 -0.6 hypothetical protein compare
PS417_06845 -1.1 -0.8 lipoprotein compare
PS417_21195 -1.1 -2.0 enoyl-CoA hydratase compare
PS417_07820 -1.1 -1.2 transposase compare
PS417_04420 -1.1 -4.6 histidinol dehydrogenase compare
PS417_00510 -1.1 -0.6 membrane protein compare
PS417_01850 -1.1 -1.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01795 -1.1 -6.0 glucosyltransferase MdoH compare
PS417_04275 -1.1 -6.1 hypothetical protein compare
PS417_20035 -1.1 -4.2 adenosylcobinamide kinase compare
PS417_19190 -1.1 -1.9 BolA family transcriptional regulator compare
PS417_16520 -1.0 -1.3 cold-shock protein compare
PS417_10210 -1.0 -3.1 hypothetical protein compare
PS417_19755 -1.0 -1.2 flagellar motor switch protein FliM compare
PS417_26740 -1.0 -3.8 homoserine acetyltransferase compare
PS417_10015 -1.0 -0.6 hypothetical protein compare
PS417_21555 -1.0 -7.2 flagellar hook protein FlgE compare
PS417_16875 -1.0 -2.4 signal peptidase compare
PS417_27870 -1.0 -1.0 ATP-dependent DNA helicase RecG compare
PS417_25790 -1.0 -1.5 aminoglycoside phosphotransferase compare
PS417_20655 -1.0 -5.5 group 1 glycosyl transferase compare
PS417_16720 -1.0 -0.6 membrane protein compare
PS417_07140 -1.0 -0.4 peptidase M48 compare
PS417_18530 -1.0 -2.2 O-succinylhomoserine sulfhydrylase compare
PS417_20705 -1.0 -0.9 cbb3-type cytochrome c oxidase subunit II compare
PS417_13255 -1.0 -1.2 ABC transporter compare
PS417_10995 -1.0 -1.5 GntR family transcriptional regulator compare
PS417_23110 -1.0 -4.4 2-isopropylmalate synthase compare
PS417_17240 -1.0 -1.0 trigger factor compare
PS417_18585 -1.0 -2.4 3-isopropylmalate dehydrogenase compare
PS417_06620 -1.0 -1.2 hypothetical protein compare
PS417_21595 -1.0 -2.6 flagellar biosynthesis protein FlgN compare
PS417_18200 -1.0 -1.3 glyoxalase compare
PS417_12355 -1.0 -1.2 magnesium chelatase compare
PS417_23385 -1.0 -5.0 cytochrome o ubiquinol oxidase subunit I compare
PS417_23900 -1.0 -4.4 poly(A) polymerase compare
PS417_27535 -1.0 -3.3 chemotaxis protein CheY compare
PS417_23135 -1.0 -0.8 GTP-binding protein compare
PS417_23775 -1.0 -0.8 exodeoxyribonuclease V subunit beta compare
PS417_09330 -1.0 -1.8 NAD(P)H-quinone oxidoreductase compare
PS417_24615 -1.0 -0.3 hypothetical protein compare
PS417_05610 -1.0 -2.3 bacterioferritin compare
PS417_04415 -1.0 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_26265 -1.0 -0.9 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days in Pseudomonas simiae WCS417

For in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days across organisms