Experiment set29IT074 for Pseudomonas putida KT2440

Compare to:

3-Hydroxyhexanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0787 -6.1 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0763 -5.8 -14.1 Medium-chain-fatty-acid CoA ligase compare
PP_0356 -5.8 -5.7 malate synthase G compare
PP_2675 -5.6 -5.5 Cytochrome c-type protein compare
PP_0417 -5.6 -15.8 Anthranilate synthase component 1 compare
PP_5095 -5.4 -3.7 pyrroline-5-carboxylate reductase compare
PP_4994 -5.4 -7.3 conserved protein of unknown function compare
PP_0422 -5.4 -5.2 Indole-3-glycerol phosphate synthase compare
PP_0691 -5.3 -7.4 Glutamate 5-kinase compare
PP_4116 -5.3 -13.2 isocitrate lyase compare
PP_1898 -5.3 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_0966 -5.3 -10.7 Histidinol dehydrogenase compare
PP_1231 -5.2 -6.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1988 -5.1 -11.5 3-isopropylmalate dehydrogenase compare
PP_4723 -5.1 -20.4 Carbamoyl-phosphate synthase large chain compare
PP_4678 -5.0 -15.9 Ketol-acid reductoisomerase compare
PP_5659 -5.0 -5.4 protein of unknown function compare
PP_0292 -5.0 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0184 -5.0 -4.9 Argininosuccinate lyase compare
PP_5098 -5.0 -10.1 methionine biosynthesis protein MetW compare
PP_1088 -5.0 -12.1 Argininosuccinate synthase compare
PP_0967 -4.9 -11.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0767 -4.9 -12.2 Transcriptional regulator, LuxR family compare
PP_4999 -4.9 -3.3 dihydroorotase-like protein compare
PP_0290 -4.9 -8.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4890 -4.8 -8.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_4724 -4.8 -7.6 Carbamoyl-phosphate synthase small chain compare
PP_4058 -4.8 -9.2 1,4-alpha-glucan branching enzyme compare
PP_1985 -4.6 -7.7 3-isopropylmalate dehydratase large subunit compare
PP_1617 -4.6 -9.3 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_0420 -4.6 -13.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_1995 -4.5 -8.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4679 -4.5 -8.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4789 -4.4 -6.8 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_5128 -4.4 -7.6 Dihydroxy-acid dehydratase compare
PP_0164 -4.4 -8.9 conserved protein of unknown function compare
PP_1616 -4.3 -11.3 formaldehyde dehydrogenase, glutathione-dependent compare
PP_5289 -4.3 -5.1 Acetylglutamate kinase compare
PP_4700 -4.2 -5.0 pantothenate synthetase compare
PP_0082 -4.2 -2.9 tryptophan synthase alpha chain compare
PP_4680 -4.2 -15.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0127 -4.2 -8.9 Thiol:disulfide interchange protein compare
PP_1079 -4.2 -5.0 Ornithine carbamoyltransferase compare
PP_2327 -4.2 -9.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1986 -4.2 -4.0 3-isopropylmalate dehydratase small subunit compare
PP_5097 -4.1 -15.4 homoserine O-acetyltransferase compare
PP_0965 -4.1 -12.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2903 -4.0 -4.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_3511 -4.0 -8.4 Branched-chain-amino-acid aminotransferase compare
PP_4565 -4.0 -18.4 Isocitrate dehydrogenase kinase/phosphatase compare
PP_5185 -4.0 -8.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5322 -3.9 -8.4 putative metal ion transporter compare
PP_0289 -3.9 -9.7 Imidazoleglycerol-phosphate dehydratase compare
PP_0083 -3.8 -3.7 tryptophan synthase beta chain compare
PP_2371 -3.8 -5.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4696 -3.8 -2.6 Nitrogen regulation protein NR(I) compare
PP_2001 -3.7 -12.7 O-succinylhomoserine sulfhydrylase compare
PP_0421 -3.7 -7.7 Anthranilate phosphoribosyltransferase compare
PP_2665 -3.7 -5.7 Glycerol metabolism activator compare
PP_3245 -3.6 -2.1 conserved protein of unknown function compare
PP_4799 -3.5 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1778 -3.5 -5.4 Lipopolysaccharide ABC export system, permease protein compare
PP_1111 -3.5 -7.1 putative Synthetase compare
PP_4909 -3.4 -9.6 phosphoserine phosphatase compare
PP_1615 -3.4 -9.7 Transcriptional regulator, LysR family compare
PP_5155 -3.3 -6.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1110 -3.3 -4.8 serine acetyltransferase compare
PP_3999 -3.3 -6.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5015 -3.2 -4.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0809 -3.2 -12.3 disulfide bond formation protein B compare
PP_2370 -3.2 -5.1 conserved protein of unknown function compare
PP_1025 -3.2 -9.5 2-isopropylmalate synthase compare
PP_4993 -3.2 -2.2 Glutathione synthetase compare
PP_5014 -3.1 -2.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_2433 -3.1 -3.5 conserved protein of unknown function compare
PP_3806 -3.0 -4.6 Hydrolase, isochorismatase family compare
PP_1109 -3.0 -10.8 Transcriptional regulator, GntR family compare
PP_0293 -2.9 -3.4 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2328 -2.8 -5.4 Phosphoadenosine phosphosulfate reductase compare
PP_3821 -2.8 -11.0 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4699 -2.8 -7.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0246 -2.7 -2.2 two-component system DNA-binding response transcriptional dual regulator compare
PP_0376 -2.6 -10.0 Coenzyme PQQ synthesis protein E compare
PP_0948 -2.6 -2.5 Phosphocarrier protein HPr compare
PP_1779 -2.5 -6.8 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_5017 -2.4 -1.5 Sec-independent protein translocase protein TatB compare
PP_0381 -2.4 -8.1 Coenzyme PQQ synthesis protein F compare
PP_1237 -2.3 -3.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5085 -2.3 -7.7 malic enzyme B compare
PP_1654 -2.2 -3.4 cysteine synthase B compare
PP_0378 -2.1 -7.8 Pyrroloquinoline-quinone synthase compare
PP_4268 -2.1 -1.8 nucleoid-associated broad specificity regulator compare
PP_1233 -2.0 -3.7 sulfurtransferase compare
PP_4943 -2.0 -2.7 putative Glycosyl transferase compare
PP_4122 -2.0 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0379 -1.9 -6.5 Coenzyme PQQ synthesis protein B compare
PP_5453 -1.8 -2.1 conserved protein of unknown function compare
PP_0801 -1.8 -1.5 conserved exported protein of unknown function compare
PP_5145 -1.8 -12.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0377 -1.7 -2.3 coenzyme PQQ synthesis protein D compare
PP_5217 -1.7 -14.7 Polyphosphate kinase compare
PP_0833 -1.7 -2.4 queuine tRNA-ribosyltransferase compare
PP_5104 -1.7 -7.5 thiazole synthase compare
PP_4060 -1.7 -11.6 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_4782 -1.7 -4.0 Phosphomethylpyrimidine kinase compare
PP_2217 -1.6 -3.0 enoyl-CoA hydratase compare
PP_2414 -1.6 -1.6 conserved exported protein of unknown function compare
PP_2671 -1.6 -6.6 Sensor histidine kinase compare
PP_4199 -1.5 -1.8 putative Lipoprotein compare
PP_2672 -1.5 -5.2 Transcriptional activator protein ExaE compare
PP_1224 -1.5 -4.6 periplasmic subunit of the TolQRA transport system compare
PP_4797 -1.5 -2.1 conserved protein of unknown function compare
PP_0368 -1.5 -8.6 putative Acyl-CoA dehydrogenase compare
PP_1493 -1.5 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1994 -1.5 -1.0 tRNA pseudouridine (38-40)synthase compare
PP_2682 -1.5 -2.5 Fe-containing alcohol dehydrogenase compare
PP_3102 -1.4 -3.6 conserved protein of unknown function compare
PP_4977 -1.4 -8.3 5,10-methylenetetrahydrofolate reductase compare
PP_3105 -1.4 -2.6 conserved membrane protein of unknown function compare
PP_2674 -1.4 -8.6 quinoprotein ethanol dehydrogenase compare
PP_1293 -1.4 -1.4 molybdopterin synthase small subunit compare
PP_0856 -1.4 -2.5 conserved lipoprotein of unknown function compare
PP_2375 -1.4 -8.0 cobalamin-dependent methionine synthase compare
PP_0888 -1.4 -1.9 Photosynthetic apparatus regulatory protein RegA compare
PP_4342 -1.4 -1.8 flagellar synthesis regulator, putative ATPase compare
PP_5114 -1.3 -1.3 putative adenine methyltransferase compare
PP_0735 -1.3 -0.9 molybdopterin-synthase adenylyltransferase compare
PP_1269 -1.3 -1.2 Universal stress protein family compare
PP_1366 -1.3 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_5248 -1.3 -1.1 putative hydrolase compare
PP_0063 -1.3 -2.9 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0117 -1.3 -5.5 Zn(2+) ABC transporter - permease subunit compare
PP_0048 -1.3 -1.4 conserved protein of unknown function compare
PP_4895 -1.3 -2.7 tRNA dimethylallyltransferase compare
PP_t29 -1.3 -2.7 tRNA-Ala compare
PP_5203 -1.3 -5.0 5-formyltetrahydrofolate cyclo-ligase compare
PP_2499 -1.3 -1.2 conserved protein of unknown function compare
PP_4470 -1.2 -2.7 putative transcriptional regulator (Arc domain-containing) compare
PP_5230 -1.2 -3.4 Tyrosine recombinase XerC compare
PP_2820 -1.2 -4.3 HTH-type transcriptional regulator nfxB compare
PP_4004 -1.2 -1.8 DNA translocase FtsK compare
PP_2000 -1.2 -1.1 amidophosphoribosyl transferase compare
PP_5701 -1.2 -1.3 conserved protein of unknown function compare
PP_0949 -1.2 -3.9 putative ATP-binding protein UPF0042 compare
PP_3539 -1.2 -2.9 putative Transcriptional regulator compare
PP_1348 -1.2 -5.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0901 -1.2 -4.0 DNA-binding response regulator compare
PP_2302 -1.2 -3.0 DNA-binding, ATP-dependent protease compare
PP_4940 -1.1 -4.9 Putative glycosyltransferase compare
PP_1217 -1.1 -1.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3244 -1.1 -2.6 Magnesium transporter, MgtC family compare
PP_0120 -1.1 -5.7 putative zinc ABC transporter compare
PP_1292 -1.1 -3.8 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_0513 -1.1 -2.6 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0247 -1.1 -5.8 Osmolarity sensor protein EnvZ compare
PP_1628 -1.1 -3.8 NMN amidohydrolase compare
PP_1733 -1.1 -0.7 membrane ATPase of the MinC-MinD-MinE system compare
PP_1045 -1.1 -1.7 Type II secretion pathway protein XcpP compare
PP_2575 -1.0 -1.3 conserved exported protein of unknown function compare
PP_4922 -1.0 -6.0 Phosphomethylpyrimidine synthase compare
PP_0025 -1.0 -1.0 hypothetical protein compare
PP_3904 -1.0 -2.8 conserved protein of unknown function compare
PP_5216 -1.0 -1.5 exopolyphosphatase compare
PP_0435 -1.0 -8.3 Peptidase, M23/M37 family compare
PP_3903 -1.0 -1.5 conserved protein of unknown function compare
PP_1468 -1.0 -1.1 Tyrosine recombinase XerD compare
PP_4826 -1.0 -3.9 Precorrin-3B C17-methyltransferase compare
PP_0065 -1.0 -2.3 NAD-binding component of TrK potassium transporter compare
PP_2681 -1.0 -2.3 coenzyme PQQ synthesis protein D compare
PP_5471 -1.0 -1.2 putative response regulator receiver protein compare
PP_3505 -1.0 -2.2 conserved protein of unknown function compare
PP_2899 -1.0 -1.1 conserved exported protein of unknown function compare
PP_3471 -0.9 -3.7 conserved protein of unknown function compare
PP_5748 -0.9 -1.4 cytochrome c heme lyase subunit compare
PP_1055 -0.9 -0.7 Type II secretion pathway protein GspN compare
PP_5352 -0.9 -5.5 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_2539 -0.9 -3.5 Transcriptional regulator, LysR family compare
PP_1303 -0.9 -5.4 Sulfate adenylyltransferase subunit 2 compare
PP_1872 -0.9 -5.0 glutamate-pyruvate aminotransferase compare
PP_1677 -0.9 -3.5 Adenosyl-cobyric acid synthase compare
PP_4892 -0.9 -4.3 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_1216 -0.9 -0.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5229 -0.9 -3.2 conserved protein of unknown function compare
PP_1020 -0.9 -1.3 putative glucose-6-phosphate 1-epimerase compare
PP_3398 -0.9 -1.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4098 -0.8 -1.2 UvrABC system protein C compare
PP_2683 -0.8 -3.4 putative sensory box histidine kinase/response regulator compare
PP_5100 -0.8 -1.4 dITP/XTP pyrophosphatase compare
PP_3603 -0.8 -4.6 Transcriptional regulator, GntR family compare
PP_4681 -0.8 -2.5 conserved protein of unknown function compare
PP_2031 -0.8 -1.3 conserved protein of unknown function compare
PP_5422 -0.8 -1.8 hypothetical protein compare
PP_4340 -0.8 -2.0 response regulator for chemotactic signal transduction compare
PP_1198 -0.8 -1.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4880 -0.8 -3.6 exoribonuclease R compare
PP_3409 -0.8 -1.8 putative Cobalamin biosynthesis protein cobE compare
PP_1304 -0.8 -4.5 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_4597 -0.8 -2.6 Cyclic pyranopterin monophosphate synthase compare
PP_1679 -0.8 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_2756 -0.8 -2.1 conserved protein of unknown function compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source 3-Hydroxyhexanoic acid in Pseudomonas putida KT2440

For carbon source 3-Hydroxyhexanoic acid across organisms