Experiment set29IT073 for Pseudomonas putida KT2440

Compare to:

3-Hydroxyhexanoic acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_5659 -7.2 -4.9 protein of unknown function compare
PP_0787 -6.1 -4.2 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4724 -6.0 -7.6 Carbamoyl-phosphate synthase small chain compare
PP_3511 -5.9 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0292 -5.8 -4.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2903 -5.8 -4.0 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_0356 -5.7 -5.6 malate synthase G compare
PP_0763 -5.7 -13.7 Medium-chain-fatty-acid CoA ligase compare
PP_0967 -5.6 -8.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4116 -5.4 -12.6 isocitrate lyase compare
PP_0417 -5.4 -17.0 Anthranilate synthase component 1 compare
PP_1985 -5.4 -5.2 3-isopropylmalate dehydratase large subunit compare
PP_4680 -5.4 -11.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5095 -5.3 -3.7 pyrroline-5-carboxylate reductase compare
PP_0691 -5.3 -6.6 Glutamate 5-kinase compare
PP_4723 -5.3 -19.8 Carbamoyl-phosphate synthase large chain compare
PP_4890 -5.3 -8.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_0422 -5.3 -5.2 Indole-3-glycerol phosphate synthase compare
PP_4678 -5.1 -14.1 Ketol-acid reductoisomerase compare
PP_1616 -5.1 -9.2 formaldehyde dehydrogenase, glutathione-dependent compare
PP_0290 -5.1 -6.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0184 -5.0 -4.8 Argininosuccinate lyase compare
PP_1088 -5.0 -11.5 Argininosuccinate synthase compare
PP_0767 -4.9 -11.4 Transcriptional regulator, LuxR family compare
PP_5098 -4.8 -9.2 methionine biosynthesis protein MetW compare
PP_4999 -4.8 -3.3 dihydroorotase-like protein compare
PP_3806 -4.7 -5.7 Hydrolase, isochorismatase family compare
PP_0966 -4.7 -11.0 Histidinol dehydrogenase compare
PP_2665 -4.7 -5.6 Glycerol metabolism activator compare
PP_1988 -4.7 -12.0 3-isopropylmalate dehydrogenase compare
PP_1986 -4.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_0289 -4.7 -7.8 Imidazoleglycerol-phosphate dehydratase compare
PP_4789 -4.7 -6.4 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_1995 -4.6 -7.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5015 -4.6 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5185 -4.6 -7.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0164 -4.6 -8.8 conserved protein of unknown function compare
PP_0965 -4.5 -11.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1079 -4.5 -4.4 Ornithine carbamoyltransferase compare
PP_5322 -4.5 -6.8 putative metal ion transporter compare
PP_4994 -4.4 -7.4 conserved protein of unknown function compare
PP_5097 -4.4 -14.2 homoserine O-acetyltransferase compare
PP_1898 -4.4 -4.3 MotA/TolQ/ExbB proton channel family protein compare
PP_4679 -4.4 -7.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3821 -4.3 -11.2 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4058 -4.3 -10.5 1,4-alpha-glucan branching enzyme compare
PP_0420 -4.3 -12.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2433 -4.3 -4.2 conserved protein of unknown function compare
PP_4700 -4.3 -5.0 pantothenate synthetase compare
PP_5128 -4.2 -7.8 Dihydroxy-acid dehydratase compare
PP_2327 -4.2 -9.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1110 -4.2 -7.5 serine acetyltransferase compare
PP_0421 -4.2 -8.8 Anthranilate phosphoribosyltransferase compare
PP_1615 -4.1 -11.6 Transcriptional regulator, LysR family compare
PP_0082 -4.1 -2.9 tryptophan synthase alpha chain compare
PP_4909 -4.1 -9.4 phosphoserine phosphatase compare
PP_2371 -4.0 -4.8 Sulphite reductase hemoprotein, beta subunit compare
PP_1111 -4.0 -6.7 putative Synthetase compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_1617 -3.9 -8.4 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_4565 -3.8 -17.0 Isocitrate dehydrogenase kinase/phosphatase compare
PP_0127 -3.8 -7.9 Thiol:disulfide interchange protein compare
PP_1654 -3.8 -2.6 cysteine synthase B compare
PP_5155 -3.7 -5.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1231 -3.6 -5.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2001 -3.6 -10.1 O-succinylhomoserine sulfhydrylase compare
PP_1233 -3.6 -4.9 sulfurtransferase compare
PP_5014 -3.6 -2.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_3999 -3.5 -5.3 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_2328 -3.3 -4.5 Phosphoadenosine phosphosulfate reductase compare
PP_1025 -3.2 -10.3 2-isopropylmalate synthase compare
PP_0735 -3.2 -2.0 molybdopterin-synthase adenylyltransferase compare
PP_5289 -3.2 -4.9 Acetylglutamate kinase compare
PP_1778 -3.2 -6.1 Lipopolysaccharide ABC export system, permease protein compare
PP_4993 -3.1 -2.1 Glutathione synthetase compare
PP_0809 -3.0 -12.2 disulfide bond formation protein B compare
PP_4699 -3.0 -6.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4696 -2.9 -4.4 Nitrogen regulation protein NR(I) compare
PP_1109 -2.8 -10.5 Transcriptional regulator, GntR family compare
PP_4943 -2.5 -2.4 putative Glycosyl transferase compare
PP_0381 -2.5 -6.9 Coenzyme PQQ synthesis protein F compare
PP_2370 -2.5 -3.3 conserved protein of unknown function compare
PP_1779 -2.4 -6.6 Lipopolysaccharide ABC export system, ATP-binding protein compare
PP_1493 -2.4 -4.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_5085 -2.4 -7.8 malic enzyme B compare
PP_4874 -2.3 -1.6 50S ribosomal protein L9 compare
PP_2672 -2.3 -5.8 Transcriptional activator protein ExaE compare
PP_0378 -2.2 -7.3 Pyrroloquinoline-quinone synthase compare
PP_4895 -2.2 -3.0 tRNA dimethylallyltransferase compare
PP_0948 -2.2 -2.3 Phosphocarrier protein HPr compare
PP_4940 -2.2 -6.8 Putative glycosyltransferase compare
PP_4782 -2.0 -3.7 Phosphomethylpyrimidine kinase compare
PP_5217 -2.0 -14.8 Polyphosphate kinase compare
PP_0379 -2.0 -5.0 Coenzyme PQQ synthesis protein B compare
PP_2674 -2.0 -7.5 quinoprotein ethanol dehydrogenase compare
PP_2675 -1.9 -2.1 Cytochrome c-type protein compare
PP_1468 -1.9 -1.8 Tyrosine recombinase XerD compare
PP_5145 -1.8 -14.1 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_4060 -1.8 -11.0 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase compare
PP_0856 -1.8 -2.6 conserved lipoprotein of unknown function compare
PP_5230 -1.7 -4.0 Tyrosine recombinase XerC compare
PP_3245 -1.7 -1.7 conserved protein of unknown function compare
PP_4122 -1.7 -1.6 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4910 -1.7 -1.2 conserved protein of unknown function compare
PP_3580 -1.7 -2.1 conserved protein of unknown function compare
PP_5104 -1.7 -4.3 thiazole synthase compare
PP_3098 -1.7 -1.5 conserved protein of unknown function compare
PP_0368 -1.7 -8.8 putative Acyl-CoA dehydrogenase compare
PP_2031 -1.7 -1.6 conserved protein of unknown function compare
PP_2375 -1.6 -9.7 cobalamin-dependent methionine synthase compare
PP_0377 -1.6 -1.6 coenzyme PQQ synthesis protein D compare
PP_4961 -1.5 -2.1 putative Lipoprotein compare
PP_0376 -1.5 -7.0 Coenzyme PQQ synthesis protein E compare
PP_0949 -1.5 -4.5 putative ATP-binding protein UPF0042 compare
PP_0719 -1.5 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2414 -1.4 -1.4 conserved exported protein of unknown function compare
PP_2302 -1.4 -3.1 DNA-binding, ATP-dependent protease compare
PP_0833 -1.4 -2.7 queuine tRNA-ribosyltransferase compare
PP_0593 -1.4 -1.3 putative ribosome-binding factor compare
PP_3244 -1.3 -2.3 Magnesium transporter, MgtC family compare
PP_4977 -1.3 -7.4 5,10-methylenetetrahydrofolate reductase compare
PP_4532 -1.3 -2.3 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4922 -1.3 -7.3 Phosphomethylpyrimidine synthase compare
PP_5203 -1.3 -4.7 5-formyltetrahydrofolate cyclo-ligase compare
PP_0246 -1.3 -1.4 two-component system DNA-binding response transcriptional dual regulator compare
PP_5114 -1.3 -1.2 putative adenine methyltransferase compare
PP_t10 -1.3 -2.3 tRNA-Pro compare
PP_3102 -1.2 -4.3 conserved protein of unknown function compare
PP_2671 -1.2 -6.9 Sensor histidine kinase compare
PP_5352 -1.2 -7.0 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex compare
PP_0855 -1.2 -2.5 conserved protein of unknown function compare
PP_3239 -1.2 -2.6 putative cointegrate resolution protein T Tn4652 compare
PP_1224 -1.2 -4.7 periplasmic subunit of the TolQRA transport system compare
PP_1303 -1.2 -6.0 Sulfate adenylyltransferase subunit 2 compare
PP_2136 -1.1 -2.9 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4997 -1.1 -1.7 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4004 -1.1 -1.8 DNA translocase FtsK compare
PP_0063 -1.1 -2.5 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_3506 -1.1 -3.8 Magnesium chelatase, subunit ChII compare
PP_4364 -1.1 -2.5 putative Anti-sigma F factor antagonist compare
PP_2976 -1.1 -1.9 putative transposase compare
PP_5644 -1.1 -3.4 conserved membrane protein of unknown function compare
PP_1348 -1.1 -4.3 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_2168 -1.1 -5.9 Transaldolase compare
PP_0120 -1.0 -4.8 putative zinc ABC transporter compare
PP_1216 -1.0 -0.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0117 -1.0 -4.3 Zn(2+) ABC transporter - permease subunit compare
PP_3829 -1.0 -3.7 Molybdenum transport system permease protein ModB compare
PP_0888 -1.0 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_2682 -1.0 -2.4 Fe-containing alcohol dehydrogenase compare
PP_1987 -1.0 -1.6 Methlytransferase, UbiE/COQ5 family compare
PP_2322 -1.0 -5.7 Major outer membrane lipoprotein compare
PP_5748 -1.0 -1.5 cytochrome c heme lyase subunit compare
PP_5279 -1.0 -2.3 conserved protein of unknown function compare
PP_3726 -1.0 -0.9 Enoyl-CoA hydratase/isomerase family protein compare
PP_1217 -1.0 -1.3 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2000 -1.0 -1.1 amidophosphoribosyl transferase compare
PP_4238 -1.0 -2.2 conserved protein of unknown function compare
PP_0435 -1.0 -7.4 Peptidase, M23/M37 family compare
PP_4531 -0.9 -3.0 conserved exported protein of unknown function compare
PP_4902 -0.9 -1.4 Oligoribonuclease compare
PP_0980 -0.9 -3.8 Probable cytosol aminopeptidase compare
PP_2756 -0.9 -1.8 conserved protein of unknown function compare
PP_1268 -0.9 -2.9 putative HtrA suppressor protein sohA compare
PP_3081 -0.9 -3.4 conserved protein of unknown function compare
PP_1628 -0.9 -3.5 NMN amidohydrolase compare
PP_3590 -0.9 -5.5 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0901 -0.9 -3.0 DNA-binding response regulator compare
PP_0025 -0.9 -0.9 hypothetical protein compare
PP_5597 -0.9 -2.5 conserved protein of unknown function compare
PP_2511 -0.9 -2.4 conserved protein of unknown function compare
PP_4837 -0.9 -1.9 conserved protein of unknown function compare
PP_2820 -0.9 -2.5 HTH-type transcriptional regulator nfxB compare
PP_1269 -0.9 -0.9 Universal stress protein family compare
PP_5035 -0.9 -4.1 Histidine utilization repressor compare
PP_5146 -0.9 -4.5 RNA pyrophosphohydrolase compare
PP_1099 -0.9 -2.1 Cold shock protein CapB compare
PP_4340 -0.9 -2.2 response regulator for chemotactic signal transduction compare
PP_3773 -0.9 -1.3 conserved protein of unknown function compare
PP_3110 -0.8 -1.3 protein of unknown function compare
PP_0886 -0.8 -2.4 conserved exported protein of unknown function compare
PP_1676 -0.8 -3.4 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_3755 -0.8 -3.4 3-hydroxybutyryl-CoA dehydrogenase compare
PP_2027 -0.8 -2.5 conserved exported protein of unknown function compare
PP_2217 -0.8 -1.5 enoyl-CoA hydratase compare
PP_1635 -0.8 -2.1 DNA-binding response regulator compare
PP_3035 -0.8 -1.3 conserved protein of unknown function compare
PP_1304 -0.8 -5.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0978 -0.8 -3.3 conserved protein of unknown function compare
PP_5594 -0.8 -1.5 conserved protein of unknown function compare
PP_3507 -0.8 -6.2 Aerobic cobaltochelatase subunit CobN compare
PP_4829 -0.8 -1.5 putative precorrin-3B synthase compare
PP_3505 -0.8 -1.9 conserved protein of unknown function compare
PP_0393 -0.8 -0.5 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3481 -0.8 -1.1 conserved exported protein of unknown function compare
PP_1691 -0.8 -2.2 conserved protein of unknown function compare
PP_1935 -0.8 -1.6 Transcriptional regulator, Cro/CI family compare
PP_0406 -0.8 -2.5 Nucleotidyltransferase family protein compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source 3-Hydroxyhexanoic acid in Pseudomonas putida KT2440

For carbon source 3-Hydroxyhexanoic acid across organisms