Experiment set29IT070 for Pseudomonas putida KT2440

Compare to:

rac-3-Hydroxypentanoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4724 -6.4 -11.4 Carbamoyl-phosphate synthase small chain compare
PP_0422 -6.3 -4.3 Indole-3-glycerol phosphate synthase compare
PP_4723 -6.0 -20.8 Carbamoyl-phosphate synthase large chain compare
PP_2335 -5.9 -5.8 methylcitrate synthase compare
PP_0290 -5.9 -4.1 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1110 -5.9 -3.4 serine acetyltransferase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0966 -5.7 -9.5 Histidinol dehydrogenase compare
PP_4679 -5.6 -5.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2334 -5.5 -3.8 2-methylisocitrate lyase compare
PP_0691 -5.5 -7.5 Glutamate 5-kinase compare
PP_2001 -5.4 -12.6 O-succinylhomoserine sulfhydrylase compare
PP_0967 -5.4 -9.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1231 -5.3 -5.2 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_5095 -5.3 -3.6 pyrroline-5-carboxylate reductase compare
PP_4678 -5.3 -14.4 Ketol-acid reductoisomerase compare
PP_4680 -5.2 -11.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0787 -5.2 -5.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1985 -5.1 -7.0 3-isopropylmalate dehydratase large subunit compare
PP_0184 -5.1 -3.5 Argininosuccinate lyase compare
PP_5097 -5.1 -11.8 homoserine O-acetyltransferase compare
PP_1079 -5.0 -3.5 Ornithine carbamoyltransferase compare
PP_0292 -5.0 -4.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4058 -5.0 -7.6 1,4-alpha-glucan branching enzyme compare
PP_1088 -5.0 -11.6 Argininosuccinate synthase compare
PP_1988 -4.9 -11.0 3-isopropylmalate dehydrogenase compare
PP_3123 -4.9 -10.4 acetoacetyl CoA-transferase (subunit B) compare
PP_5185 -4.9 -7.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4700 -4.8 -3.3 pantothenate synthetase compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_4909 -4.7 -7.8 phosphoserine phosphatase compare
PP_1986 -4.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_5098 -4.6 -9.4 methionine biosynthesis protein MetW compare
PP_5289 -4.6 -4.5 Acetylglutamate kinase compare
PP_3511 -4.6 -10.3 Branched-chain-amino-acid aminotransferase compare
PP_4890 -4.6 -4.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5347 -4.6 -10.6 pyruvate carboxylase subunit A compare
PP_0417 -4.5 -18.8 Anthranilate synthase component 1 compare
PP_0289 -4.5 -8.1 Imidazoleglycerol-phosphate dehydratase compare
PP_5346 -4.5 -9.6 pyruvate carboxylase subunit B compare
PP_0965 -4.5 -12.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1995 -4.4 -7.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_2327 -4.4 -10.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1109 -4.4 -13.4 Transcriptional regulator, GntR family compare
PP_0420 -4.3 -13.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0082 -4.1 -2.9 tryptophan synthase alpha chain compare
PP_1616 -4.0 -11.8 formaldehyde dehydrogenase, glutathione-dependent compare
PP_4699 -3.9 -5.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1111 -3.8 -6.3 putative Synthetase compare
PP_0083 -3.7 -3.6 tryptophan synthase beta chain compare
PP_1025 -3.6 -12.0 2-isopropylmalate synthase compare
PP_0421 -3.6 -9.2 Anthranilate phosphoribosyltransferase compare
PP_5128 -3.5 -6.8 Dihydroxy-acid dehydratase compare
PP_3122 -3.5 -7.2 acetoacetyl CoA-transferase (subunit A) compare
PP_2371 -3.5 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_5015 -3.5 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3121 -3.4 -3.6 transcriptional regulator, LysR family compare
PP_2337 -3.4 -2.3 aconitate isomerase compare
PP_4799 -3.4 -2.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0630 -3.3 -1.4 DNA gyrase inhibitor YacG compare
PP_5348 -3.3 -9.3 Transcriptional regulator, LysR family compare
PP_1617 -3.2 -8.7 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_5155 -3.2 -6.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4364 -3.2 -4.5 putative Anti-sigma F factor antagonist compare
PP_5322 -3.1 -8.8 putative metal ion transporter compare
PP_4993 -3.0 -2.1 Glutathione synthetase compare
PP_1615 -3.0 -10.1 Transcriptional regulator, LysR family compare
PP_0356 -3.0 -7.5 malate synthase G compare
PP_1233 -2.9 -4.7 sulfurtransferase compare
PP_4696 -2.8 -5.0 Nitrogen regulation protein NR(I) compare
PP_2370 -2.6 -2.6 conserved protein of unknown function compare
PP_2433 -2.6 -3.5 conserved protein of unknown function compare
PP_5104 -2.5 -8.2 thiazole synthase compare
PP_3999 -2.5 -7.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5313 -2.4 -2.7 DNA-binding protein HU-alpha compare
PP_4116 -2.3 -11.5 isocitrate lyase compare
PP_3398 -2.3 -2.3 putative Curli fiber surface-exposed nucleator CsgB compare
PP_4895 -2.3 -2.7 tRNA dimethylallyltransferase compare
PP_1654 -2.3 -3.1 cysteine synthase B compare
PP_5014 -2.2 -3.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0339 -2.1 -6.8 Pyruvate dehydrogenase E1 component compare
PP_2328 -2.0 -5.5 Phosphoadenosine phosphosulfate reductase compare
PP_0001 -2.0 -1.8 probable chromosome-partitioning protein compare
PP_2336 -1.9 -1.3 aconitate hydratase 1 compare
PP_3105 -1.9 -2.3 conserved membrane protein of unknown function compare
PP_3245 -1.9 -1.8 conserved protein of unknown function compare
PP_0164 -1.8 -8.5 conserved protein of unknown function compare
PP_5145 -1.8 -15.5 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0362 -1.7 -9.3 Biotin synthase compare
PP_0381 -1.7 -6.3 Coenzyme PQQ synthesis protein F compare
PP_0127 -1.7 -6.9 Thiol:disulfide interchange protein compare
PP_0435 -1.7 -12.3 Peptidase, M23/M37 family compare
PP_4782 -1.7 -3.9 Phosphomethylpyrimidine kinase compare
PP_3098 -1.7 -1.5 conserved protein of unknown function compare
PP_4098 -1.6 -1.6 UvrABC system protein C compare
PP_0833 -1.6 -2.3 queuine tRNA-ribosyltransferase compare
PP_1224 -1.6 -5.8 periplasmic subunit of the TolQRA transport system compare
PP_2868 -1.6 -6.2 Transcriptional regulator, Cro/CI family compare
PP_4004 -1.5 -2.1 DNA translocase FtsK compare
PP_1048 -1.5 -2.0 putative protein secretion protein for export compare
PP_2217 -1.5 -2.4 enoyl-CoA hydratase compare
PP_4515 -1.5 -4.7 Transcriptional regulator, MarR family compare
PP_0948 -1.5 -1.9 Phosphocarrier protein HPr compare
PP_0291 -1.5 -2.3 conserved protein of unknown function compare
PP_1679 -1.4 -1.8 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3102 -1.4 -4.0 conserved protein of unknown function compare
PP_0376 -1.4 -6.5 Coenzyme PQQ synthesis protein E compare
PP_4922 -1.4 -7.6 Phosphomethylpyrimidine synthase compare
PP_4480 -1.3 -6.5 arginine N-succinyltransferase, subunit alpha compare
PP_4627 -1.3 -2.1 transcriptional regulator, LysR family compare
PP_0379 -1.3 -4.6 Coenzyme PQQ synthesis protein B compare
PP_4470 -1.3 -2.8 putative transcriptional regulator (Arc domain-containing) compare
PP_0236 -1.3 -2.4 NAD(P)H-dependent FMN reductase subunit compare
PP_3806 -1.3 -3.5 Hydrolase, isochorismatase family compare
PP_0378 -1.3 -6.1 Pyrroloquinoline-quinone synthase compare
PP_5217 -1.2 -11.0 Polyphosphate kinase compare
PP_2123 -1.2 -5.8 molybdenum::molybdopterin ligase compare
PP_0856 -1.2 -2.5 conserved lipoprotein of unknown function compare
PP_3505 -1.2 -2.5 conserved protein of unknown function compare
PP_5748 -1.2 -1.7 cytochrome c heme lyase subunit compare
PP_2674 -1.2 -6.9 quinoprotein ethanol dehydrogenase compare
PP_2499 -1.2 -1.0 conserved protein of unknown function compare
PP_1493 -1.2 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2682 -1.2 -3.0 Fe-containing alcohol dehydrogenase compare
PP_3359 -1.2 -2.1 putative Hydroxycinnamic acid degradation regulator compare
PP_1269 -1.1 -1.1 Universal stress protein family compare
PP_4342 -1.1 -1.5 flagellar synthesis regulator, putative ATPase compare
PP_5230 -1.1 -3.0 Tyrosine recombinase XerC compare
PP_1778 -1.1 -3.9 Lipopolysaccharide ABC export system, permease protein compare
PP_0377 -1.1 -1.8 coenzyme PQQ synthesis protein D compare
PP_2883 -1.1 -1.7 conserved protein of unknown function compare
PP_4891 -1.1 -2.9 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_2976 -1.1 -2.5 putative transposase compare
PP_0763 -1.1 -8.0 Medium-chain-fatty-acid CoA ligase compare
PP_1217 -1.1 -1.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2671 -1.1 -5.9 Sensor histidine kinase compare
PP_4964 -1.1 -1.2 D-erythrose 4-phosphate dehydrogenase compare
PP_2333 -1.0 -2.1 GntR family transcriptional regulator compare
PP_1176 -1.0 -2.3 conserved protein of unknown function compare
PP_5652 -1.0 -1.3 conserved protein of unknown function, phage origin compare
PP_4938 -1.0 -4.6 putative Glycosyl transferase compare
PP_4789 -1.0 -3.6 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_0593 -1.0 -1.1 putative ribosome-binding factor compare
PP_1216 -1.0 -0.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3821 -1.0 -6.1 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0273 -1.0 -2.1 conserved protein of unknown function compare
PP_0380 -1.0 -4.2 Coenzyme PQQ synthesis protein A compare
PP_1218 -1.0 -2.1 putative acyl-CoA thioesterase compare
PP_5331 -1.0 -3.2 Long-chain acyl-CoA thioester hydrolase compare
PP_0735 -1.0 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_4936 -1.0 -3.5 O-antigen polymerase compare
PP_2168 -1.0 -4.7 Transaldolase compare
PP_2903 -1.0 -1.5 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_4917 -1.0 -2.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_4943 -1.0 -1.3 putative Glycosyl transferase compare
PP_2672 -0.9 -3.6 Transcriptional activator protein ExaE compare
PP_2375 -0.9 -6.7 cobalamin-dependent methionine synthase compare
PP_2030 -0.9 -2.0 conserved protein of unknown function compare
PP_4009 -0.9 -2.3 ATP-dependent Clp protease adapter protein ClpS compare
PP_4005 -0.9 -2.8 Leucyl/phenylalanyl-tRNA--protein transferase compare
PP_2675 -0.9 -2.2 Cytochrome c-type protein compare
PP_2504 -0.9 -2.0 putative tautomerase K2 compare
PP_3603 -0.9 -4.6 Transcriptional regulator, GntR family compare
PP_4129 -0.9 -1.2 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1800 -0.9 -4.8 Oxidoreductase Rmd compare
PP_1303 -0.9 -5.2 Sulfate adenylyltransferase subunit 2 compare
PP_0368 -0.9 -6.0 putative Acyl-CoA dehydrogenase compare
PP_0513 -0.9 -2.3 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_1804 -0.9 -6.1 Glycosyl transferase WbpL compare
PP_4977 -0.9 -5.8 5,10-methylenetetrahydrofolate reductase compare
PP_0832 -0.9 -3.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1097 -0.9 -1.3 Methionine--tRNA ligase compare
PP_1292 -0.9 -3.3 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_5717 -0.9 -1.3 conserved protein of unknown function compare
PP_0250 -0.9 -3.4 heat shock protein Hsp15 involved in ribosome recycling compare
PP_4546 -0.9 -2.6 ATP-dependent helicase HrpA compare
PP_4940 -0.9 -3.9 Putative glycosyltransferase compare
PP_1799 -0.9 -6.1 GDP-mannose 4,6-dehydratase compare
PP_1802 -0.9 -6.9 glycosyl transferase compare
PP_4939 -0.9 -3.3 conserved protein of unknown function compare
PP_4379 -0.9 -5.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_3484 -0.9 -1.9 Response regulator receiver protein compare
PP_4131 -0.9 -3.4 NADH-quinone oxidoreductase subunit N compare
PP_4532 -0.9 -2.1 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5000 -0.9 -1.0 peptidase component of the ATP-dependent HslVU protease compare
PP_4130 -0.9 -3.0 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1142 -0.9 -0.6 conserved protein of unknown function compare
PP_1304 -0.9 -5.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_1328 -0.9 -1.4 Protein MraZ compare
PP_5028 -0.8 -1.9 proline iminopeptidase compare
PP_1430 -0.8 -4.7 putative periplasmic serine endoprotease DegP-like compare
PP_0694 -0.8 -2.9 conserved protein of unknown function compare
PP_2820 -0.8 -2.2 HTH-type transcriptional regulator nfxB compare
PP_0002 -0.8 -3.5 probable chromosome partition protein compare
PP_2302 -0.8 -2.2 DNA-binding, ATP-dependent protease compare
PP_0949 -0.8 -2.9 putative ATP-binding protein UPF0042 compare
PP_5146 -0.8 -4.5 RNA pyrophosphohydrolase compare
PP_1872 -0.8 -5.3 glutamate-pyruvate aminotransferase compare
PP_4581 -0.8 -1.6 putative amidotransferase compare
PP_5216 -0.8 -1.8 exopolyphosphatase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source rac-3-Hydroxypentanoic Acid in Pseudomonas putida KT2440

For carbon source rac-3-Hydroxypentanoic Acid across organisms