Experiment set29IT070 for Pseudomonas putida KT2440

Compare to:

rac-3-Hydroxypentanoic Acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_2773 +1.5 3.1 conserved protein of unknown function compare
PP_5583 +1.4 1.2 conserved protein of unknown function compare
PP_5393 +1.4 2.7 putative metal-binding chaperone compare
PP_5486 +1.1 2.0 conserved protein of unknown function compare
PP_4099 +1.1 8.8 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2749 +1.0 4.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_3880 +1.0 1.6 conserved exported protein of unknown function compare
PP_5475 +1.0 1.6 conserved protein of unknown function compare
PP_4642 +1.0 1.8 Cyclic diguanosine monophosphate-binding protein compare
PP_0673 +1.0 1.1 conserved protein of unknown function compare
PP_1650 +0.9 8.2 Sensor protein GacS compare
PP_3487 +0.9 2.0 conserved exported protein of unknown function compare
PP_4271 +0.9 0.8 conserved protein of unknown function compare
PP_2107 +0.9 2.2 conserved protein of unknown function compare
PP_1623 +0.8 6.0 RNA polymerase, sigma S (sigma 38) factor compare
PP_1366 +0.8 0.6 Transcriptional regulator MvaT, P16 subunit compare
PP_5546 +0.8 1.5 conserved protein of unknown function compare
PP_5661 +0.8 2.2 putative lipoprotein compare
PP_5027 +0.8 1.9 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_4981 +0.8 1.2 polyisoprene-binding protein, acidic stress response factor compare
PP_4373 +0.8 5.7 Transcriptional regulator FleQ compare
PP_4625 +0.7 3.1 anti-holin regulator of holin CidA compare
PP_2889 +0.7 4.2 putative Transmembrane regulator PrtR compare
PP_4273 +0.7 1.5 Transcriptional regulator, MerR family compare
PP_1186 +0.7 1.8 two component system DNA-binding transcriptional dual regulator compare
PP_1004 +0.7 1.2 conserved protein of unknown function compare
PP_5248 +0.7 0.7 putative hydrolase compare
PP_5359 +0.7 1.3 CobW/P47K family protein compare
PP_1938 +0.7 1.8 conserved protein of unknown function compare
PP_3117 +0.7 2.4 putative protein involved in error-prone processing of DNA lesions compare
PP_0274 +0.7 1.0 putative transcriptional regulator containing HTH domain compare
PP_2494 +0.7 2.1 conserved protein of unknown function compare
PP_4050 +0.7 5.7 glycogen synthase compare
PP_0179 +0.7 4.2 putative efflux transporter compare
PP_4356 +0.7 1.5 Flagellar protein FliO compare
PP_3519 +0.7 0.8 putative Lipoprotein compare
PP_1774 +0.6 0.7 conserved exported protein of unknown function compare
PP_3318 +0.6 1.3 conserved protein of unknown function compare
PP_5017 +0.6 0.9 Sec-independent protein translocase protein TatB compare
PP_5121 +0.6 2.5 conserved exported protein of unknown function compare
PP_0166 +0.6 4.7 HlyD family secretion protein compare
PP_5051 +0.6 1.2 conserved protein of unknown function compare
PP_3926 +0.6 1.0 short-chain dehydrogenase compare
PP_1055 +0.6 0.7 Type II secretion pathway protein GspN compare
PP_2053 +0.6 2.8 conserved protein of unknown function compare
PP_1208 +0.6 1.4 conserved protein of unknown function, SlyX family compare
PP_0972 +0.6 1.6 UPF0213 protein PP_0972 compare
PP_1028 +0.6 2.3 Transcriptional regulator, LysR family compare
PP_4054 +0.6 1.1 conserved protein of unknown function compare
PP_2247 +0.6 2.0 putative Endoribonuclease compare
PP_5557 +0.6 1.6 protein of unknown function compare
PP_0803 +0.6 4.1 Protein secretion ABC efflux system, membrane fusion protein compare
PP_5083 +0.6 1.4 putative Type IV pili biogenesis protein PilM compare
PP_3930 +0.6 2.0 conserved exported protein of unknown function compare
PP_t12 +0.6 0.7 tRNA-Thr compare
PP_2330 +0.6 2.8 conserved protein of unknown function compare
PP_5610 +0.6 1.2 protein of unknown function compare
PP_4682 +0.6 1.5 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_2442 +0.6 0.6 conserved protein of unknown function, DUF480 family compare
PP_2580 +0.6 1.7 conserved protein of unknown function compare
PP_2016 +0.6 1.6 conserved protein of unknown function compare
PP_2720 +0.6 1.5 conserved protein of unknown function compare
PP_0022 +0.6 1.4 hypothetical protein compare
PP_1979 +0.5 1.7 putative Hydrolase compare
PP_3409 +0.5 1.0 putative Cobalamin biosynthesis protein cobE compare
PP_3052 +0.5 0.8 conserved protein of unknown function compare
PP_1644 +0.5 1.7 NAD(P)H dehydrogenase (quinone) compare
PP_5619 +0.5 2.2 protein of unknown function compare
PP_0176 +0.5 3.7 putative efflux transporter compare
PP_3971 +0.5 1.2 conserved protein of unknown function compare
PP_4358 +0.5 3.4 flagellar synthesis, switching and energizing component compare
PP_2907 +0.5 1.9 DNA-binding response regulator compare
PP_1828 +0.5 2.3 conserved protein of unknown function compare
PP_3247 +0.5 1.4 Transporter, bile acid/Na+ symporter family compare
PP_0177 +0.5 2.8 conserved protein of unknown function compare
PP_1141 +0.5 2.9 branched-chain amino acids ABC transporter - periplasmic leucine binding subunit compare
PP_1729 +0.5 0.8 conserved protein of unknown function compare
PP_5232 +0.5 1.0 conserved protein of unknown function compare
PP_0653 +0.5 0.9 conserved protein of unknown function compare
PP_2437 +0.5 3.2 putative Acyl-CoA dehydrogenase compare
PP_0574 +0.5 4.1 DNA-binding response regulator, LuxR family compare
PP_5205 +0.5 2.4 conserved protein of unknown function compare
PP_2648 +0.5 1.6 Universal stress protein family compare
PP_5162 +0.5 2.1 conserved exported protein of unknown function compare
PP_1822 +0.5 2.5 conserved protein of unknown function compare
PP_2090 +0.5 1.4 Uroporphyrinogen-III C-methyltransferase compare
PP_3460 +0.5 1.2 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_4995 +0.5 1.8 putative protein possibly involved in the control of exopolysaccharide production compare
PP_4136 +0.5 0.5 Transcriptional regulator, LuxR family compare
PP_2313 +0.5 1.1 conserved membrane protein of unknown function compare
PP_0178 +0.5 3.6 putative efflux pump compare
PP_5471 +0.5 0.9 putative response regulator receiver protein compare
PP_5705 +0.5 0.8 protein of unknown function compare
PP_3265 +0.5 1.6 putative phosphohydrolase of unknown function compare
PP_2181 +0.5 1.2 Transcriptional regulator, Cro/CI family compare
PP_3451 +0.5 2.1 conserved exported protein of unknown function compare
PP_4382 +0.5 3.6 Peptidoglycan hydrolase FlgJ compare
PP_4199 +0.5 1.0 putative Lipoprotein compare
PP_2634 +0.5 1.9 putative Cellulose synthase compare
PP_3380 +0.5 1.8 2-ketogluconate utilization repressor compare
PP_1976 +0.5 2.0 HlyD family secretion protein compare
PP_3861 +0.5 1.4 Phage FluMu protein gp46 compare
PP_2332 +0.5 2.4 conserved exported protein of unknown function compare
PP_3892 +0.5 1.2 conserved protein of unknown function compare
PP_4171 +0.5 3.8 conserved exported protein of unknown function compare
PP_1362 +0.5 1.3 pyruvate kinase II compare
PP_4874 +0.5 0.6 50S ribosomal protein L9 compare
PP_5243 +0.5 1.6 putative hydrolase compare
PP_4504 +0.5 0.6 conserved exported protein of unknown function compare
PP_1164 +0.5 1.6 Transcriptional regulator, LysR family compare
PP_1664 +0.5 1.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_3637 +0.5 0.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4734 +0.5 2.8 DNA-binding transcriptional dual regulator, LldR-L-lactate compare
PP_4208 +0.5 1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_0167 +0.5 3.9 Toxin secretion ATP-binding protein compare
PP_4949 +0.5 2.3 putative peptidase, TldD/PmbA family compare
PP_5621 +0.5 0.7 protein of unknown function compare
PP_4369 +0.4 2.5 Flagellar M-ring protein compare
PP_0168 +0.4 4.1 putative surface adhesion protein compare
PP_4066 +0.4 1.4 methylglutaconyl-CoA hydratase compare
PP_1139 +0.4 3.3 branched chain amino acid transporter - permease subunit compare
PP_4942 +0.4 0.6 conserved protein of unknown function compare
PP_3837 +0.4 1.1 inner membrane protein of unknown function compare
PP_2104 +0.4 1.8 conserved membrane protein of unknown function compare
PP_1716 +0.4 0.8 Transcriptional regulator, Cro/CI family compare
PP_2809 +0.4 1.5 conserved membrane protein of unknown function compare
PP_4690 +0.4 1.5 Rieske 2Fe-2S family protein compare
PP_5176 +0.4 1.0 conserved protein of unknown function compare
PP_2718 +0.4 1.6 arsenic resistance transcriptional regulator compare
PP_4207 +0.4 1.3 conserved protein of unknown function compare
PP_0805 +0.4 2.5 Outer membrane efflux protein compare
PP_5221 +0.4 1.6 conserved protein of unknown function, UPF0178 family compare
PP_4662 +0.4 1.4 conserved protein of unknown function compare
PP_2459 +0.4 0.9 ribose pyranase compare
PP_5667 +0.4 1.6 putative microcin B17-like-processing protein, McbC family compare
PP_1364 +0.4 2.8 conserved exported protein of unknown function compare
PP_1368 +0.4 2.2 putative membrane protein containing a glycosyltransferase domain compare
PP_1512 +0.4 1.2 conserved protein of unknown function compare
PP_5008 +0.4 0.9 Poly granule-associated protein compare
PP_1026 +0.4 1.6 Peptidase, M23/M37 family compare
PP_0547 +0.4 1.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4105 +0.4 2.2 conserved protein of unknown function compare
PP_4757 +0.4 1.8 D-glucarate dehydratase / L-idarate epimerase compare
PP_3378 +0.4 0.9 putative 2-ketogluconokinase compare
PP_4316 +0.4 1.4 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_4386 +0.4 1.7 flagellar basal-body rod protein FlgF compare
PP_2409 +0.4 1.1 cobalt-zinc-cadmium resistance protein compare
PP_3034 +0.4 1.0 putative Regulator protein compare
PP_1999 +0.4 1.0 membrane protein required for colicin V production compare
PP_1038 +0.4 0.7 conserved protein of unknown function compare
PP_2550 +0.4 1.1 putative transcriptional regulatory protein compare
PP_1398 +0.4 2.0 conserved protein of unknown function compare
PP_1151 +0.4 1.9 conserved protein of unknown function compare
PP_1454 +0.4 1.3 conserved protein of unknown function compare
PP_3614 +0.4 1.3 conserved membrane protein of unknown function compare
PP_4115 +0.4 2.1 conserved exported protein of unknown function compare
PP_2497 +0.4 0.8 conserved protein of unknown function compare
PP_2533 +0.4 1.5 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_1124 +0.4 1.3 conserved membrane protein of unknown function compare
PP_3916 +0.4 1.3 conserved protein of unknown function compare
PP_1788 +0.4 1.0 conserved protein of unknown function compare
PP_1042 +0.4 1.8 Type II secretion system protein K compare
PP_4814 +0.4 1.1 ATP-dependent protease La domain protein compare
PP_0424 +0.4 1.3 DNA-binding transcriptional dual regulator compare
PP_1841 +0.4 2.1 Cytochrome c family protein compare
PP_5429 +0.4 1.9 protein of unknown function compare
PP_0262 +0.4 1.2 conserved protein of unknown function compare
PP_0352 +0.4 1.6 RNA polymerase sigma-70 factor, ECF subfamily compare
PP_4808 +0.4 1.6 23S rRNA m3psi1915 methyltransferase compare
PP_0865 +0.4 1.4 ECF subfamily RNA polymerase sigma-24 factor compare
PP_1968 +0.4 2.1 TetR family transcriptional regulator compare
PP_4166 +0.4 1.6 conserved protein of unknown function compare
PP_1824 +0.4 0.8 Smr domain protein compare
PP_2219 +0.4 1.5 conserved protein of unknown function compare
PP_5598 +0.4 1.6 conserved protein of unknown function compare
PP_1275 +0.4 1.8 conserved protein of unknown function compare
PP_5209 +0.4 1.8 conserved exported protein of unknown function compare
PP_2737 +0.4 0.8 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5589 +0.4 1.2 protein of unknown function containing Rhs repeat-associated core domain compare
PP_1143 +0.4 1.8 3-hydroxyisobutyrate dehydrogenase family protein compare
PP_5039 +0.4 1.0 conserved protein of unknown function compare
PP_2500 +0.4 1.2 conserved protein of unknown function compare
PP_2073 +0.4 1.4 Acetyltransferase, GNAT family compare
PP_4213 +0.4 1.2 putative dipeptidase compare
PP_4067 +0.4 2.2 methylcrotonyl-CoA carboxylase biotin-containing subunit alpha compare
PP_4368 +0.4 1.5 flagellar motor switch protein compare
PP_5530 +0.4 1.7 protein of unknown function compare
PP_2013 +0.4 1.7 conserved protein of unknown function compare
PP_3532 +0.4 0.7 Transcriptional regulator, AsnC family compare
PP_4139 +0.4 1.2 conserved protein of unknown function compare
PP_0804 +0.4 2.0 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_4361 +0.4 2.2 Flagellar hook-length control protein FliK compare
PP_1210 +0.4 2.1 DNA-binding stress protein compare
PP_1137 +0.4 2.0 high-affinity branched-chain amino acid transporter, ATP binding compare
PP_1406 +0.4 2.1 conserved protein of unknown function compare
PP_1978 +0.4 2.3 Transcriptional regulator, TetR family compare
PP_0643 +0.4 0.6 protein of unknown function compare
PP_5449 +0.4 1.8 conserved exported protein of unknown function compare
PP_0741 +0.4 1.9 conserved protein of unknown function compare
PP_5739 +0.4 2.0 protein of unknown function compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source rac-3-Hydroxypentanoic Acid in Pseudomonas putida KT2440

For carbon source rac-3-Hydroxypentanoic Acid across organisms