Experiment set29IT069 for Pseudomonas putida KT2440

Compare to:

rac-3-Hydroxypentanoic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4724 -6.5 -11.4 Carbamoyl-phosphate synthase small chain compare
PP_4723 -6.5 -21.6 Carbamoyl-phosphate synthase large chain compare
PP_1985 -6.0 -4.1 3-isopropylmalate dehydratase large subunit compare
PP_1988 -5.9 -8.1 3-isopropylmalate dehydrogenase compare
PP_0293 -5.8 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0966 -5.6 -9.4 Histidinol dehydrogenase compare
PP_4678 -5.6 -12.4 Ketol-acid reductoisomerase compare
PP_2335 -5.4 -9.1 methylcitrate synthase compare
PP_1088 -5.4 -10.3 Argininosuccinate synthase compare
PP_0290 -5.3 -6.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5289 -5.3 -3.7 Acetylglutamate kinase compare
PP_5097 -5.2 -10.6 homoserine O-acetyltransferase compare
PP_4680 -5.1 -12.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4890 -5.0 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_0292 -5.0 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2334 -4.9 -5.8 2-methylisocitrate lyase compare
PP_1995 -4.8 -7.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5015 -4.8 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0967 -4.8 -11.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4679 -4.8 -6.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2001 -4.8 -12.6 O-succinylhomoserine sulfhydrylase compare
PP_4999 -4.7 -3.2 dihydroorotase-like protein compare
PP_0417 -4.7 -19.1 Anthranilate synthase component 1 compare
PP_1986 -4.7 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_3511 -4.6 -8.7 Branched-chain-amino-acid aminotransferase compare
PP_5347 -4.6 -10.2 pyruvate carboxylase subunit A compare
PP_1110 -4.5 -6.9 serine acetyltransferase compare
PP_4700 -4.5 -4.4 pantothenate synthetase compare
PP_0184 -4.5 -6.2 Argininosuccinate lyase compare
PP_5185 -4.5 -8.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5128 -4.5 -9.0 Dihydroxy-acid dehydratase compare
PP_0691 -4.3 -7.2 Glutamate 5-kinase compare
PP_1109 -4.3 -13.5 Transcriptional regulator, GntR family compare
PP_5098 -4.3 -9.1 methionine biosynthesis protein MetW compare
PP_1231 -4.2 -8.1 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1079 -4.2 -5.0 Ornithine carbamoyltransferase compare
PP_0421 -4.2 -9.3 Anthranilate phosphoribosyltransferase compare
PP_0082 -4.1 -2.8 tryptophan synthase alpha chain compare
PP_4058 -4.1 -10.3 1,4-alpha-glucan branching enzyme compare
PP_3123 -4.1 -11.1 acetoacetyl CoA-transferase (subunit B) compare
PP_0420 -4.1 -12.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -4.0 -5.5 Indole-3-glycerol phosphate synthase compare
PP_0787 -4.0 -4.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_3122 -4.0 -7.8 acetoacetyl CoA-transferase (subunit A) compare
PP_5155 -4.0 -7.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4909 -3.9 -8.8 phosphoserine phosphatase compare
PP_5346 -3.9 -9.6 pyruvate carboxylase subunit B compare
PP_0083 -3.9 -2.7 tryptophan synthase beta chain compare
PP_1025 -3.8 -12.6 2-isopropylmalate synthase compare
PP_0965 -3.8 -11.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5348 -3.8 -11.1 Transcriptional regulator, LysR family compare
PP_5322 -3.7 -7.6 putative metal ion transporter compare
PP_1654 -3.7 -2.6 cysteine synthase B compare
PP_0289 -3.7 -8.2 Imidazoleglycerol-phosphate dehydratase compare
PP_2371 -3.6 -4.9 Sulphite reductase hemoprotein, beta subunit compare
PP_1616 -3.5 -10.6 formaldehyde dehydrogenase, glutathione-dependent compare
PP_2370 -3.5 -2.7 conserved protein of unknown function compare
PP_4696 -3.4 -4.1 Nitrogen regulation protein NR(I) compare
PP_4799 -3.4 -2.4 putative Muramoyltetrapeptide carboxypeptidase compare
PP_5748 -3.4 -1.8 cytochrome c heme lyase subunit compare
PP_2337 -3.4 -2.3 aconitate isomerase compare
PP_3999 -3.4 -5.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2327 -3.3 -8.3 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4699 -3.2 -6.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5095 -3.1 -3.5 pyrroline-5-carboxylate reductase compare
PP_1111 -3.1 -5.6 putative Synthetase compare
PP_5014 -2.9 -2.8 Phosphoribosyl-AMP cyclohydrolase compare
PP_1233 -2.9 -4.4 sulfurtransferase compare
PP_0356 -2.9 -8.0 malate synthase G compare
PP_1615 -2.8 -8.6 Transcriptional regulator, LysR family compare
PP_4993 -2.8 -3.3 Glutathione synthetase compare
PP_1617 -2.7 -7.4 S-formylglutathione hydrolase / S-lactoylglutathione hydrolase compare
PP_4364 -2.6 -3.9 putative Anti-sigma F factor antagonist compare
PP_3105 -2.6 -3.3 conserved membrane protein of unknown function compare
PP_3121 -2.5 -3.0 transcriptional regulator, LysR family compare
PP_4701 -2.5 -1.6 glucose-6-phosphate isomerase compare
PP_4116 -2.4 -9.5 isocitrate lyase compare
PP_0339 -2.4 -6.9 Pyruvate dehydrogenase E1 component compare
PP_2328 -2.4 -5.5 Phosphoadenosine phosphosulfate reductase compare
PP_0833 -2.3 -3.7 queuine tRNA-ribosyltransferase compare
PP_2433 -2.2 -2.9 conserved protein of unknown function compare
PP_t12 -2.1 -1.4 tRNA-Thr compare
PP_4895 -2.0 -3.0 tRNA dimethylallyltransferase compare
PP_5104 -2.0 -6.0 thiazole synthase compare
PP_0566 -2.0 -1.5 translation-related factor compare
PP_4004 -1.9 -2.3 DNA translocase FtsK compare
PP_3398 -1.9 -1.8 putative Curli fiber surface-exposed nucleator CsgB compare
PP_2336 -1.9 -1.3 aconitate hydratase 1 compare
PP_4943 -1.9 -2.5 putative Glycosyl transferase compare
PP_1468 -1.8 -1.7 Tyrosine recombinase XerD compare
PP_4782 -1.8 -4.1 Phosphomethylpyrimidine kinase compare
PP_0362 -1.8 -9.6 Biotin synthase compare
PP_1224 -1.8 -5.3 periplasmic subunit of the TolQRA transport system compare
PP_4789 -1.7 -3.6 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_t10 -1.7 -2.1 tRNA-Pro compare
PP_0593 -1.7 -1.5 putative ribosome-binding factor compare
PP_4997 -1.7 -2.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_5145 -1.7 -13.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_2675 -1.6 -3.9 Cytochrome c-type protein compare
PP_5557 -1.6 -1.8 protein of unknown function compare
PP_0435 -1.6 -12.2 Peptidase, M23/M37 family compare
PP_0381 -1.6 -6.0 Coenzyme PQQ synthesis protein F compare
PP_0856 -1.6 -2.9 conserved lipoprotein of unknown function compare
PP_1294 -1.5 -4.7 molybdopterin synthase large subunit compare
PP_4130 -1.5 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2672 -1.5 -4.5 Transcriptional activator protein ExaE compare
PP_5216 -1.5 -2.5 exopolyphosphatase compare
PP_1912 -1.5 -3.1 Phosphate acyltransferase compare
PP_0319 -1.5 -1.7 conserved protein of unknown function compare
PP_0164 -1.5 -7.2 conserved protein of unknown function compare
PP_1096 -1.5 -1.7 putative electron transport complex protein compare
PP_4940 -1.4 -5.4 Putative glycosyltransferase compare
PP_1303 -1.4 -5.6 Sulfate adenylyltransferase subunit 2 compare
PP_0378 -1.4 -6.7 Pyrroloquinoline-quinone synthase compare
PP_1328 -1.4 -2.1 Protein MraZ compare
PP_4964 -1.4 -1.0 D-erythrose 4-phosphate dehydrogenase compare
PP_5230 -1.4 -3.4 Tyrosine recombinase XerC compare
PP_1292 -1.4 -4.6 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_1702 -1.3 -3.4 Recombination-associated protein RdgC compare
PP_5217 -1.3 -10.9 Polyphosphate kinase compare
PP_0086 -1.3 -1.9 conserved protein of unknown function compare
PP_5090 -1.3 -2.9 putative cell division protein compare
PP_1922 -1.3 -4.3 conserved protein of unknown function compare
PP_1366 -1.3 -0.8 Transcriptional regulator MvaT, P16 subunit compare
PP_0376 -1.3 -6.0 Coenzyme PQQ synthesis protein E compare
PP_4874 -1.3 -1.2 50S ribosomal protein L9 compare
PP_0377 -1.3 -1.8 coenzyme PQQ synthesis protein D compare
PP_4922 -1.3 -6.6 Phosphomethylpyrimidine synthase compare
PP_2540 -1.3 -2.7 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4122 -1.3 -1.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3286 -1.2 -4.0 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3946 -1.2 -1.0 HTH-type transcriptional repressor NicR compare
PP_2217 -1.2 -1.9 enoyl-CoA hydratase compare
PP_5161 -1.2 -3.0 putative lysophospholipase compare
PP_0379 -1.2 -4.7 Coenzyme PQQ synthesis protein B compare
PP_2868 -1.2 -4.3 Transcriptional regulator, Cro/CI family compare
PP_3603 -1.2 -5.0 Transcriptional regulator, GntR family compare
PP_1994 -1.1 -1.1 tRNA pseudouridine (38-40)synthase compare
PP_1074 -1.1 -2.7 DNA-binding transcriptional repressor - GlpR-glycerol-3-phosphate compare
PP_4515 -1.1 -3.5 Transcriptional regulator, MarR family compare
PP_2306 -1.1 -2.0 conserved exported protein of unknown function compare
PP_2087 -1.1 -3.7 CmpX protein compare
PP_1568 -1.1 -1.0 conserved protein of unknown function compare
PP_0291 -1.1 -1.4 conserved protein of unknown function compare
PP_3102 -1.1 -4.5 conserved protein of unknown function compare
PP_4837 -1.1 -1.3 conserved protein of unknown function compare
PP_4994 -1.1 -4.7 conserved protein of unknown function compare
PP_0763 -1.1 -7.8 Medium-chain-fatty-acid CoA ligase compare
PP_2168 -1.0 -5.4 Transaldolase compare
PP_3245 -1.0 -1.4 conserved protein of unknown function compare
PP_2999 -1.0 -1.2 Glyoxalase family protein compare
PP_1217 -1.0 -1.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1804 -1.0 -5.9 Glycosyl transferase WbpL compare
PP_4480 -1.0 -5.4 arginine N-succinyltransferase, subunit alpha compare
PP_3590 -1.0 -4.2 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1898 -1.0 -2.1 MotA/TolQ/ExbB proton channel family protein compare
PP_2674 -1.0 -5.0 quinoprotein ethanol dehydrogenase compare
PP_2568 -1.0 -1.3 Ring-cleaving dioxygenase compare
PP_2847 -1.0 -1.2 Urease accessory protein UreJ compare
PP_3447 -1.0 -1.0 conserved membrane protein of unknown function compare
PP_0127 -1.0 -4.9 Thiol:disulfide interchange protein compare
PP_2671 -1.0 -4.6 Sensor histidine kinase compare
PP_4627 -1.0 -1.5 transcriptional regulator, LysR family compare
PP_4342 -1.0 -1.4 flagellar synthesis regulator, putative ATPase compare
PP_0428 -1.0 -5.6 aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase compare
PP_3821 -1.0 -5.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_1430 -1.0 -5.6 putative periplasmic serine endoprotease DegP-like compare
PP_1208 -1.0 -1.8 conserved protein of unknown function, SlyX family compare
PP_2665 -1.0 -2.4 Glycerol metabolism activator compare
PP_0735 -1.0 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_2333 -1.0 -2.2 GntR family transcriptional regulator compare
PP_2127 -1.0 -2.3 Sensor histidine kinase compare
PP_1635 -1.0 -2.6 DNA-binding response regulator compare
PP_1801 -1.0 -6.8 Glycosyl transferase WbpY compare
PP_2000 -1.0 -1.1 amidophosphoribosyl transferase compare
PP_2682 -1.0 -2.7 Fe-containing alcohol dehydrogenase compare
PP_4296 -0.9 -0.9 conserved exported protein of unknown function compare
PP_4126 -0.9 -1.2 NADH-quinone oxidoreductase subunit I compare
PP_4938 -0.9 -4.6 putative Glycosyl transferase compare
PP_2031 -0.9 -1.5 conserved protein of unknown function compare
PP_1778 -0.9 -3.6 Lipopolysaccharide ABC export system, permease protein compare
PP_4131 -0.9 -3.5 NADH-quinone oxidoreductase subunit N compare
PP_1048 -0.9 -1.1 putative protein secretion protein for export compare
PP_3773 -0.9 -1.4 conserved protein of unknown function compare
PP_0257 -0.9 -3.1 protein sulfur transferase compare
PP_4797 -0.9 -1.4 conserved protein of unknown function compare
PP_1322 -0.9 -1.3 putative Lipoprotein compare
PP_0001 -0.9 -1.0 probable chromosome-partitioning protein compare
PP_3244 -0.9 -1.8 Magnesium transporter, MgtC family compare
PP_5114 -0.9 -1.0 putative adenine methyltransferase compare
PP_2290 -0.9 -2.4 conserved protein of unknown function compare
PP_2123 -0.9 -4.7 molybdenum::molybdopterin ligase compare
PP_0673 -0.9 -1.2 conserved protein of unknown function compare
PP_0246 -0.9 -1.1 two-component system DNA-binding response transcriptional dual regulator compare
PP_0758 -0.9 -1.9 conserved protein of unknown function compare
PP_3829 -0.9 -3.0 Molybdenum transport system permease protein ModB compare
PP_3506 -0.9 -2.0 Magnesium chelatase, subunit ChII compare
PP_2615 -0.8 -1.3 hemolysin-coregulated protein compare
PP_3094 -0.8 -2.4 conserved exported protein of unknown function compare
PP_0948 -0.8 -1.4 Phosphocarrier protein HPr compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source rac-3-Hydroxypentanoic Acid in Pseudomonas putida KT2440

For carbon source rac-3-Hydroxypentanoic Acid across organisms