Experiment set29IT068 for Pseudomonas putida KT2440

Compare to:

D-Glucaric acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_4723 -6.6 -20.0 Carbamoyl-phosphate synthase large chain compare
PP_4724 -6.1 -11.7 Carbamoyl-phosphate synthase small chain compare
PP_0422 -6.1 -4.2 Indole-3-glycerol phosphate synthase compare
PP_0967 -6.1 -5.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -5.8 -8.9 3-isopropylmalate dehydrogenase compare
PP_0691 -5.7 -6.8 Glutamate 5-kinase compare
PP_0420 -5.7 -7.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0417 -5.7 -11.5 Anthranilate synthase component 1 compare
PP_1088 -5.6 -6.7 Argininosuccinate synthase compare
PP_5075 -5.6 -6.7 glutamate synthase (NADPH) beta subunit compare
PP_0293 -5.6 -3.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1995 -5.5 -3.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5076 -5.5 -13.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_0290 -5.4 -5.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_5185 -5.4 -5.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0965 -5.3 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0966 -5.3 -8.1 Histidinol dehydrogenase compare
PP_4678 -5.3 -11.3 Ketol-acid reductoisomerase compare
PP_3511 -5.3 -8.1 Branched-chain-amino-acid aminotransferase compare
PP_4890 -5.3 -7.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_2001 -5.2 -11.6 O-succinylhomoserine sulfhydrylase compare
PP_1985 -5.2 -5.0 3-isopropylmalate dehydratase large subunit compare
PP_4680 -5.2 -11.0 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -5.1 -3.5 Acetylglutamate kinase compare
PP_3599 -5.1 -7.8 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
PP_4364 -5.1 -5.0 putative Anti-sigma F factor antagonist compare
PP_4757 -5.0 -7.7 D-glucarate dehydratase / L-idarate epimerase compare
PP_5015 -5.0 -4.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4758 -5.0 -9.5 Major facilitator family transporter compare
PP_0184 -5.0 -3.4 Argininosuccinate lyase compare
PP_4909 -4.9 -6.8 phosphoserine phosphatase compare
PP_0787 -4.9 -4.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1079 -4.8 -3.3 Ornithine carbamoyltransferase compare
PP_0164 -4.8 -6.6 conserved protein of unknown function compare
PP_4759 -4.8 -6.6 transcriptional regulator, GntR family compare
PP_5155 -4.8 -6.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_0292 -4.8 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0421 -4.8 -7.3 Anthranilate phosphoribosyltransferase compare
PP_4679 -4.7 -6.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0339 -4.6 -4.5 Pyruvate dehydrogenase E1 component compare
PP_0289 -4.6 -7.1 Imidazoleglycerol-phosphate dehydratase compare
PP_1233 -4.6 -3.2 sulfurtransferase compare
PP_4999 -4.6 -3.1 dihydroorotase-like protein compare
PP_1109 -4.5 -13.2 Transcriptional regulator, GntR family compare
PP_5322 -4.4 -6.0 putative metal ion transporter compare
PP_5128 -4.3 -8.7 Dihydroxy-acid dehydratase compare
PP_4782 -4.3 -4.2 Phosphomethylpyrimidine kinase compare
PP_5098 -4.3 -9.1 methionine biosynthesis protein MetW compare
PP_5097 -4.2 -13.6 homoserine O-acetyltransferase compare
PP_2371 -4.1 -4.0 Sulphite reductase hemoprotein, beta subunit compare
PP_1231 -4.0 -6.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0082 -4.0 -2.7 tryptophan synthase alpha chain compare
PP_1025 -3.9 -13.6 2-isopropylmalate synthase compare
PP_1054 -3.8 -2.5 Type II secretion pathway protein XcpZ compare
PP_2327 -3.8 -8.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0083 -3.7 -2.6 tryptophan synthase beta chain compare
PP_5303 -3.6 -4.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4922 -3.6 -13.9 Phosphomethylpyrimidine synthase compare
PP_1986 -3.6 -3.1 3-isopropylmalate dehydratase small subunit compare
PP_5104 -3.5 -8.0 thiazole synthase compare
PP_4696 -3.5 -2.4 Nitrogen regulation protein NR(I) compare
PP_1912 -3.4 -6.6 Phosphate acyltransferase compare
PP_3999 -3.3 -5.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1110 -3.3 -2.9 serine acetyltransferase compare
PP_4799 -3.3 -2.3 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1111 -3.3 -6.2 putative Synthetase compare
PP_4700 -3.2 -5.3 pantothenate synthetase compare
PP_4368 -3.2 -10.6 flagellar motor switch protein compare
PP_4358 -3.1 -6.5 flagellar synthesis, switching and energizing component compare
PP_2328 -3.0 -4.6 Phosphoadenosine phosphosulfate reductase compare
PP_5095 -2.9 -3.3 pyrroline-5-carboxylate reductase compare
PP_5014 -2.8 -2.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_1426 -2.7 -11.5 L-aspartate oxidase compare
PP_4369 -2.7 -9.4 Flagellar M-ring protein compare
PP_2370 -2.6 -2.7 conserved protein of unknown function compare
PP_1664 -2.6 -4.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_2168 -2.5 -9.4 Transaldolase compare
PP_3790 -2.5 -8.3 diaminopimelate epimerase compare
PP_4356 -2.5 -2.8 Flagellar protein FliO compare
PP_2388 -2.5 -4.1 Transporter, LysE family compare
PP_1348 -2.3 -5.5 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_0914 -2.3 -10.1 GGDEF domain protein compare
PP_4344 -2.2 -11.6 flagellar export pore protein compare
PP_4874 -2.2 -1.5 50S ribosomal protein L9 compare
PP_0127 -2.0 -6.7 Thiol:disulfide interchange protein compare
PP_5748 -1.9 -2.2 cytochrome c heme lyase subunit compare
PP_0291 -1.8 -2.6 conserved protein of unknown function compare
PP_4789 -1.8 -3.5 heat shock protein, Co2+ and Mg2+ efflux protein compare
PP_4354 -1.8 -3.3 flagellar export apparatus subunit compare
PP_0735 -1.7 -1.2 molybdopterin-synthase adenylyltransferase compare
PP_5583 -1.7 -1.3 conserved protein of unknown function compare
PP_3590 -1.7 -6.9 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_3603 -1.7 -6.5 Transcriptional regulator, GntR family compare
PP_2390 -1.7 -6.3 Transcriptional regulator, LysR family compare
PP_5114 -1.7 -1.1 putative adenine methyltransferase compare
PP_1493 -1.7 -2.6 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4917 -1.6 -3.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_0833 -1.6 -2.8 queuine tRNA-ribosyltransferase compare
PP_0001 -1.6 -1.5 probable chromosome-partitioning protein compare
PP_4695 -1.6 -7.1 Sensory box histidine kinase compare
PP_4370 -1.5 -5.8 Flagellar hook-basal body complex protein FliE compare
PP_4098 -1.5 -1.5 UvrABC system protein C compare
PP_3821 -1.5 -6.4 UTP-glucose-1-phosphate uridylyltransferase compare
PP_0025 -1.5 -1.2 hypothetical protein compare
PP_1381 -1.4 -1.3 4-carboxymuconolactone decarboxylase compare
PP_0809 -1.4 -7.2 disulfide bond formation protein B compare
PP_1304 -1.4 -7.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0801 -1.3 -1.3 conserved exported protein of unknown function compare
PP_1303 -1.3 -6.4 Sulfate adenylyltransferase subunit 2 compare
PP_2322 -1.3 -8.6 Major outer membrane lipoprotein compare
PP_5028 -1.3 -2.2 proline iminopeptidase compare
PP_4359 -1.3 -3.7 Flagellar protein FliL compare
PP_4136 -1.3 -1.2 Transcriptional regulator, LuxR family compare
PP_2088 -1.3 -3.7 RNA polymerase sigma factor SigX compare
PP_2000 -1.3 -0.9 amidophosphoribosyl transferase compare
PP_4699 -1.3 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4895 -1.3 -2.5 tRNA dimethylallyltransferase compare
PP_2414 -1.3 -1.0 conserved exported protein of unknown function compare
PP_1045 -1.3 -1.1 Type II secretion pathway protein XcpP compare
PP_3946 -1.3 -0.8 HTH-type transcriptional repressor NicR compare
PP_0362 -1.3 -7.7 Biotin synthase compare
PP_0319 -1.2 -1.5 conserved protein of unknown function compare
PP_0612 -1.2 -6.1 FAD-dependent glycine/D-amino acid oxidase compare
PP_2378 -1.2 -1.8 Fe/S biogenesis protein NfuA compare
PP_2324 -1.2 -6.8 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0673 -1.2 -1.2 conserved protein of unknown function compare
PP_3580 -1.2 -1.8 conserved protein of unknown function compare
PP_3532 -1.2 -1.3 Transcriptional regulator, AsnC family compare
PP_4940 -1.2 -4.5 Putative glycosyltransferase compare
PP_4480 -1.2 -5.0 arginine N-succinyltransferase, subunit alpha compare
PP_5000 -1.2 -1.5 peptidase component of the ATP-dependent HslVU protease compare
PP_4828 -1.2 -1.0 Precorrin-8X methylmutase compare
PP_4099 -1.1 -9.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5628 -1.1 -1.1 conserved protein of unknown function compare
PP_0775 -1.1 -1.4 conserved protein of unknown function compare
PP_4004 -1.1 -1.5 DNA translocase FtsK compare
PP_5227 -1.1 -4.8 diaminopimelate decarboxylase compare
PP_4964 -1.1 -1.1 D-erythrose 4-phosphate dehydrogenase compare
PP_2402 -1.1 -2.0 putative Sensor histidine kinase compare
PP_0435 -1.1 -9.1 Peptidase, M23/M37 family compare
PP_3522 -1.1 -1.8 conserved protein of unknown function compare
PP_5315 -1.1 -2.1 Rubredoxin-1 compare
PP_5571 -1.1 -1.5 conserved protein of unknown function compare
PP_4018 -1.1 -2.5 Acetyltransferase, GNAT family compare
PP_5048 -1.1 -5.1 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4396 -1.1 -2.9 conserved protein of unknown function compare
PP_5146 -1.1 -5.3 RNA pyrophosphohydrolase compare
PP_3519 -1.1 -0.8 putative Lipoprotein compare
PP_3098 -1.1 -1.1 conserved protein of unknown function compare
PP_2142 -1.0 -1.6 Cell division inhibitor SulA compare
PP_2302 -1.0 -2.6 DNA-binding, ATP-dependent protease compare
PP_1513 -1.0 -2.2 Ribosomal RNA small subunit methyltransferase J compare
PP_4227 -1.0 -1.5 conserved protein of unknown function compare
PP_3192 -1.0 -2.3 conserved protein of unknown function compare
PP_5039 -1.0 -1.7 conserved protein of unknown function compare
PP_0676 -1.0 -2.6 putative Transcription elongation factor compare
PP_1216 -1.0 -0.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4910 -1.0 -0.9 conserved protein of unknown function compare
PP_3484 -1.0 -2.4 Response regulator receiver protein compare
PP_1733 -1.0 -0.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_5035 -0.9 -3.7 Histidine utilization repressor compare
PP_2323 -0.9 -6.0 conserved protein of unknown function compare
PP_1224 -0.9 -3.3 periplasmic subunit of the TolQRA transport system compare
PP_4803 -0.9 -5.2 D-alanyl-D-alanine carboxypeptidase compare
PP_2513 -0.9 -2.6 4-oxalomesaconate tautomerase compare
PP_4268 -0.9 -0.8 nucleoid-associated broad specificity regulator compare
PP_t64 -0.9 -2.4 tRNA-Gly compare
PP_1697 -0.9 -1.7 transcriptional regulator, GntR family compare
PP_1763 -0.9 -1.8 putative oxidoreductase compare
PP_0236 -0.9 -1.0 NAD(P)H-dependent FMN reductase subunit compare
PP_1322 -0.9 -1.3 putative Lipoprotein compare
PP_1824 -0.9 -1.1 Smr domain protein compare
PP_4952 -0.9 -1.1 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_0340 -0.9 -5.7 Glutamate-ammonia-ligase adenylyltransferase compare
PP_4130 -0.9 -2.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_4353 -0.9 -3.4 Flagellar biosynthetic protein fliR compare
PP_5191 -0.9 -2.1 conserved exported protein of unknown function compare
PP_4534 -0.9 -3.6 conserved protein of unknown function compare
PP_2899 -0.9 -1.2 conserved exported protein of unknown function compare
PP_5279 -0.9 -1.9 conserved protein of unknown function compare
PP_1217 -0.9 -1.1 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4355 -0.9 -1.9 flagellar export apparatus subunit compare
PP_3602 -0.8 -3.8 2,5-dioxovalerate dehydrogenase compare
PP_4381 -0.8 -6.2 Flagellar hook-associated protein FlgK compare
PP_0694 -0.8 -2.5 conserved protein of unknown function compare
PP_1872 -0.8 -4.3 glutamate-pyruvate aminotransferase compare
PP_1742 -0.8 -1.9 conserved inner membrane protein of unknown function compare
PP_5216 -0.8 -2.3 exopolyphosphatase compare
PP_1096 -0.8 -0.8 putative electron transport complex protein compare
PP_1097 -0.8 -1.3 Methionine--tRNA ligase compare
PP_1650 -0.8 -5.0 Sensor protein GacS compare
PP_4271 -0.8 -0.5 conserved protein of unknown function compare
PP_2820 -0.8 -2.9 HTH-type transcriptional regulator nfxB compare
PP_4997 -0.8 -1.1 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2677 -0.8 -1.3 conserved exported protein of unknown function compare
PP_5331 -0.8 -2.2 Long-chain acyl-CoA thioester hydrolase compare
PP_4122 -0.8 -1.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0913 -0.8 -3.4 conserved exported protein of unknown function compare
PP_5217 -0.8 -6.6 Polyphosphate kinase compare
PP_0246 -0.8 -1.4 two-component system DNA-binding response transcriptional dual regulator compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Glucaric acid in Pseudomonas putida KT2440

For carbon source D-Glucaric acid across organisms