Experiment set29IT068 for Pseudomonas putida KT2440

Compare to:

D-Glucaric acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_3043 +1.5 3.2 conserved protein of unknown function compare
PP_0007 +1.3 2.6 conserved hypothetical protein compare
PP_2889 +1.2 4.7 putative Transmembrane regulator PrtR compare
PP_3312 +1.1 1.1 putative Heat shock protein compare
PP_4669 +1.0 2.0 OmpA family protein compare
PP_4171 +1.0 8.7 conserved exported protein of unknown function compare
PP_4373 +0.9 7.0 Transcriptional regulator FleQ compare
PP_1113 +0.9 6.0 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1655 +0.9 3.4 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_5705 +0.9 1.6 protein of unknown function compare
PP_3840 +0.8 1.3 conserved protein of unknown function compare
PP_5232 +0.8 2.0 conserved protein of unknown function compare
PP_1142 +0.8 0.9 conserved protein of unknown function compare
PP_5001 +0.8 2.8 protease HslVU, ATPase component compare
PP_5053 +0.8 3.8 Protein-export protein SecB compare
PP_3523 +0.8 3.0 conserved protein of unknown function compare
PP_1632 +0.8 1.5 conserved protein of unknown function compare
PP_0630 +0.8 0.8 DNA gyrase inhibitor YacG compare
PP_1938 +0.8 2.1 conserved protein of unknown function compare
PP_2737 +0.7 2.4 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_2759 +0.7 2.8 ribose ABC transporter - ATP-binding subunit compare
PP_4942 +0.7 1.1 conserved protein of unknown function compare
PP_2665 +0.7 2.5 Glycerol metabolism activator compare
PP_4902 +0.7 1.3 Oligoribonuclease compare
PP_1328 +0.7 1.1 Protein MraZ compare
PP_t12 +0.7 0.9 tRNA-Thr compare
PP_1428 +0.7 1.6 Sigma factor AlgU negative regulatory protein compare
PP_0957 +0.7 1.6 D-arabinose 5-phosphate isomerase compare
PP_1979 +0.7 1.6 putative Hydrolase compare
PP_2976 +0.7 1.0 putative transposase compare
PP_1623 +0.7 4.4 RNA polymerase, sigma S (sigma 38) factor compare
PP_2718 +0.7 2.4 arsenic resistance transcriptional regulator compare
PP_5487 +0.7 1.7 conserved protein of unknown function compare
PP_4916 +0.7 2.7 putative esterase compare
PP_5486 +0.6 0.5 conserved protein of unknown function compare
PP_t13 +0.6 2.7 tRNA-Lys compare
PP_4818 +0.6 2.2 ribosomal protein L11 methyltransferase compare
PP_4207 +0.6 1.8 conserved protein of unknown function compare
PP_0166 +0.6 5.2 HlyD family secretion protein compare
PP_1605 +0.6 1.9 Ribonuclease HII compare
PP_2793 +0.6 1.8 Acyl-CoA dehydrogenase family protein compare
PP_0168 +0.6 5.8 putative surface adhesion protein compare
PP_3487 +0.6 1.7 conserved exported protein of unknown function compare
PP_5557 +0.6 1.4 protein of unknown function compare
PP_2373 +0.6 1.9 conserved protein of unknown function compare
PP_1214 +0.6 1.1 putative transcriptional regulatory protein compare
PP_2712 +0.6 2.7 conserved exported protein of unknown function compare
PP_0758 +0.6 1.8 conserved protein of unknown function compare
PP_5359 +0.6 1.4 CobW/P47K family protein compare
PP_2931 +0.6 1.7 conserved protein of unknown function compare
PP_2387 +0.6 1.5 conserved protein of unknown function compare
PP_5714 +0.6 1.9 conserved protein of unknown function compare
PP_4173 +0.6 3.9 Sensor histidine kinase/response regulator compare
PP_1828 +0.6 1.6 conserved protein of unknown function compare
PP_2090 +0.6 1.6 Uroporphyrinogen-III C-methyltransferase compare
PP_0919 +0.6 2.0 conserved protein of unknown function compare
PP_5324 +0.6 1.6 Response regulator compare
PP_0167 +0.6 5.1 Toxin secretion ATP-binding protein compare
PP_1692 +0.6 2.3 conserved protein of unknown function compare
PP_4792 +0.6 1.8 conserved exported protein of unknown function compare
PP_0258 +0.6 1.6 regulator of murein cross-linking compare
PP_3434 +0.6 1.0 conserved protein of unknown function compare
PP_1774 +0.6 1.2 conserved exported protein of unknown function compare
PP_5730 +0.6 2.2 conserved protein of unknown function compare
PP_1300 +0.6 1.0 putative amino acid ABC transporter - ATP-binding subunit compare
PP_0852 +0.6 1.6 Transcriptional regulator, Cro/CI family compare
PP_4316 +0.6 2.5 D-isomer specific 2-hydroxyacid dehydrogenase family protein compare
PP_3241 +0.6 1.0 conserved exported protein of unknown function compare
PP_1162 +0.6 3.1 Protein GstA compare
PP_2403 +0.6 1.2 Chemotaxis protein CheY compare
PP_3495 +0.6 2.6 tRNA (adenine(22)-N(1))-methyltransferase compare
PP_4559 +0.6 3.1 peptide deformylase compare
PP_5505 +0.6 1.4 conserved transmembrane protein of unknown function compare
PP_2124 +0.6 1.8 putative Glycosyl transferase compare
PP_5610 +0.6 0.8 protein of unknown function compare
PP_3803 +0.6 2.9 putative Cation ABC transporter, permease protein compare
PP_5194 +0.6 2.8 aminomethyltransferase compare
PP_2826 +0.5 1.3 Transcriptional regulator MexT compare
PP_1683 +0.5 0.9 Transcriptional regulator, MarR family compare
PP_5167 +0.5 1.5 conserved hypothetical protein compare
PP_4966 +0.5 1.0 transcriptional regulator of methionine metabolism compare
PP_5430 +0.5 1.5 protein of unknown function compare
PP_3880 +0.5 0.7 conserved exported protein of unknown function compare
PP_5429 +0.5 2.1 protein of unknown function compare
PP_5609 +0.5 1.7 conserved protein of unknown function compare
PP_4529 +0.5 2.4 conserved protein of unknown function compare
PP_2147 +0.5 1.6 conserved exported protein of unknown function compare
PP_2603 +0.5 2.7 conserved protein of unknown function compare
PP_1822 +0.5 1.8 conserved protein of unknown function compare
PP_4400 +0.5 2.8 Bkd operon transcriptional regulator compare
PP_2580 +0.5 1.5 conserved protein of unknown function compare
PP_0165 +0.5 4.2 GGDEF domain protein compare
PP_1265 +0.5 2.1 conserved protein of unknown function compare
PP_3227 +0.5 1.7 Transcriptional regulator, LysR family compare
PP_2186 +0.5 2.0 putative Formate dehydrogenase, delta subunit compare
PP_3715 +0.5 2.1 Muconate cycloisomerase 1 compare
PP_4622 +0.5 1.2 Hmg transcriptional repressor compare
PP_4391 +0.5 2.2 flagellar basal-body rod protein FlgB compare
PP_3753 +0.5 2.6 Transcriptional regulator, AraC family compare
PP_3926 +0.5 0.9 short-chain dehydrogenase compare
PP_1124 +0.5 1.5 conserved membrane protein of unknown function compare
PP_4172 +0.5 2.2 conserved exported protein of unknown function compare
PP_2067 +0.5 1.5 putative EmrB/QacA family drug resistance transporter compare
PP_2446 +0.5 2.2 conserved exported protein of unknown function compare
PP_4569 +0.5 1.1 conserved protein of unknown function compare
PP_4771 +0.5 1.7 conserved membrane protein of unknown function compare
PP_1244 +0.5 3.2 conserved protein of unknown function compare
PP_1454 +0.5 1.6 conserved protein of unknown function compare
PP_1255 +0.5 2.2 putative cis-4-hydroxy-D-proline oxidase compare
PP_5248 +0.5 0.7 putative hydrolase compare
PP_4848 +0.5 1.9 Curved DNA-binding protein compare
PP_0999 +0.5 2.0 carbamate kinase compare
PP_2950 +0.5 1.4 conserved protein of unknown function compare
PP_4793 +0.5 1.0 conserved protein of unknown function compare
PP_4720 +0.5 0.7 putative RNA binding protein compare
PP_1503 +0.5 0.8 conserved protein of unknown function compare
PP_3444 +0.5 2.2 Glyoxalase family protein compare
PP_4386 +0.5 1.9 flagellar basal-body rod protein FlgF compare
PP_1041 +0.5 1.1 twin arginine protein export complex subunit compare
PP_3637 +0.5 0.8 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_4519 +0.5 3.6 Agglutination protein compare
PP_2432 +0.5 1.6 6,7-dihydropteridine reductase compare
PP_4925 +0.5 1.4 conserved protein of unknown function compare
PP_5688 +0.5 1.9 putative NAD(FAD)-dependent dehydrogenase with Fer2_4 domain compare
PP_0972 +0.5 1.7 UPF0213 protein PP_0972 compare
PP_2883 +0.5 1.1 conserved protein of unknown function compare
PP_3481 +0.4 0.7 conserved exported protein of unknown function compare
PP_0355 +0.4 1.9 Response regulator compare
PP_1071 +0.4 2.5 glutamate / aspartate ABC transporter - periplasmic binding protein compare
PP_0378 +0.4 2.6 Pyrroloquinoline-quinone synthase compare
PP_5598 +0.4 1.8 conserved protein of unknown function compare
PP_2197 +0.4 2.2 conserved exported protein of unknown function compare
PP_1584 +0.4 1.6 conserved protein of unknown function compare
PP_1906 +0.4 2.1 ribosomal large subunit pseudouridine synthase C compare
PP_2103 +0.4 1.3 conserved protein of unknown function compare
PP_1943 +0.4 2.1 formyltetrahydrofolate deformylase compare
PP_4069 +0.4 0.8 conserved protein of unknown function compare
PP_4726 +0.4 1.1 Chaperone protein DnaJ compare
PP_0156 +0.4 2.5 pyridine nucleotide transhydrogenase subunit alpha compare
PP_4162 +0.4 1.0 conserved membrane protein of unknown function compare
PP_2900 +0.4 1.3 conserved protein of unknown function compare
PP_4561 +0.4 0.6 stress response protein compare
PP_4070 +0.4 2.0 conserved protein of unknown function compare
PP_2634 +0.4 1.8 putative Cellulose synthase compare
PP_4238 +0.4 1.3 conserved protein of unknown function compare
PP_4513 +0.4 1.7 conserved protein of unknown function compare
PP_4402 +0.4 2.7 branched-chain alpha-keto acid dehydrogenase complex, beta subunit compare
PP_2858 +0.4 1.5 conserved exported protein of unknown function compare
PP_1645 +0.4 2.1 putative enzyme compare
PP_1892 +0.4 0.8 conserved protein of unknown function compare
PP_5121 +0.4 1.2 conserved exported protein of unknown function compare
PP_2499 +0.4 0.5 conserved protein of unknown function compare
PP_0412 +0.4 2.2 Polyamine ABC transporter, periplasmic polyamine-binding protein compare
PP_3075 +0.4 1.9 putative transcriptional regulator compare
PP_3938 +0.4 0.6 conserved protein of unknown function compare
PP_3771 +0.4 1.6 conserved protein of unknown function compare
PP_2494 +0.4 1.9 conserved protein of unknown function compare
PP_2332 +0.4 2.3 conserved exported protein of unknown function compare
PP_0254 +0.4 1.2 conserved protein of unknown function compare
PP_5626 +0.4 2.5 putative phage repressor-like, DNA-binding domain compare
PP_3959 +0.4 2.3 Voltage-gated chloride channel family protein compare
PP_0770 +0.4 0.9 PemI-like protein compare
PP_3199 +0.4 1.7 putative Monooxygenase compare
PP_4390 +0.4 2.6 flagellar basal-body rod protein FlgC compare
PP_3409 +0.4 0.9 putative Cobalamin biosynthesis protein cobE compare
PP_2927 +0.4 2.1 conserved protein of unknown function compare
PP_0112 +0.4 2.5 methionine ABC transporter, periplasmic binding protein compare
PP_5485 +0.4 1.6 putative N-acetyltransferase, GNAT domain compare
PP_3117 +0.4 1.5 putative protein involved in error-prone processing of DNA lesions compare
PP_0807 +0.4 1.6 DNA-binding transcriptional dual regulator (NO) compare
PP_3705 +0.4 1.6 conserved membrane protein of unknown function compare
PP_0244 +0.4 1.3 conserved protein of unknown function compare
PP_1569 +0.4 1.7 conserved protein of unknown function compare
PP_3297 +0.4 2.3 conserved protein of unknown function compare
PP_4904 +0.4 2.4 Flagellar motor rotation protein compare
PP_1775 +0.4 1.8 Metallo-beta-lactamase family protein compare
PP_1723 +0.4 2.1 putative 2-aminoethylphosphonate transport system permease compare
PP_3083 +0.4 2.1 putative Membrane protein compare
PP_5582 +0.4 0.5 conserved protein of unknown function compare
PP_4331 +0.4 2.1 conserved protein of unknown function compare
PP_2159 +0.4 1.5 Copper-binding protein, plastocyanin/azurin family compare
PP_0150 +0.4 1.1 conserved exported protein of unknown function compare
PP_2969 +0.4 1.4 putative repressor of copper utilisation proteins compare
PP_4618 +0.4 1.7 conserved protein of unknown function compare
PP_4905 +0.4 2.4 Flagellar motor rotation protein compare
PP_3050 +0.4 2.0 conserved protein of unknown function compare
PP_0177 +0.4 1.7 conserved protein of unknown function compare
PP_2666 +0.4 1.9 conserved exported protein of unknown function compare
PP_2643 +0.4 1.8 aromatic acid chemoreceptor compare
PP_1397 +0.4 1.7 conserved protein of unknown function compare
PP_2682 +0.4 1.6 Fe-containing alcohol dehydrogenase compare
PP_0153 +0.4 1.1 hypothetical protein compare
PP_5460 +0.4 1.9 conserved membrane protein of unknown function compare
PP_1855 +0.4 1.1 conserved exported protein of unknown function compare
PP_0022 +0.4 0.9 hypothetical protein compare
PP_5206 +0.4 1.6 putative translation-related protein compare
PP_0494 +0.4 2.0 selenocysteyl-tRNA-specific translation elongation factor compare
PP_4701 +0.4 0.5 glucose-6-phosphate isomerase compare
PP_2413 +0.4 2.7 GGDEF family protein compare
PP_1268 +0.4 1.1 putative HtrA suppressor protein sohA compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Glucaric acid in Pseudomonas putida KT2440

For carbon source D-Glucaric acid across organisms