Experiment set29IT066 for Pseudomonas putida KT2440

Compare to:

Rhamnogalacturonan - from potato carbon source

200 most detrimental genes:

  gene name fitness t score description  
PP_1055 +1.7 2.0 Type II secretion pathway protein GspN compare
PP_4099 +1.4 9.5 two-componenent system BarA/UvrY - regulatory subunit compare
PP_5486 +1.3 1.7 conserved protein of unknown function compare
PP_0574 +1.3 10.4 DNA-binding response regulator, LuxR family compare
PP_2889 +1.3 5.4 putative Transmembrane regulator PrtR compare
PP_1650 +1.3 9.7 Sensor protein GacS compare
PP_1623 +1.3 9.6 RNA polymerase, sigma S (sigma 38) factor compare
PP_1198 +1.2 5.1 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0804 +1.2 6.9 Protein secretion ABC efflux system, permease and ATP-binding protein compare
PP_4682 +1.2 3.4 conserved protein of unknown function containing tetratricopeptide repeat domain compare
PP_5705 +1.2 1.1 protein of unknown function compare
PP_5475 +1.2 2.1 conserved protein of unknown function compare
PP_5338 +1.1 2.9 aspartate ammonia-lyase compare
PP_0805 +1.1 7.1 Outer membrane efflux protein compare
PP_0806 +1.1 10.0 putative Surface adhesion protein compare
PP_0803 +1.1 6.4 Protein secretion ABC efflux system, membrane fusion protein compare
PP_4942 +1.1 1.8 conserved protein of unknown function compare
PP_3481 +1.0 1.6 conserved exported protein of unknown function compare
PP_1536 +1.0 2.2 conserved protein of unknown function compare
PP_0274 +1.0 1.5 putative transcriptional regulator containing HTH domain compare
PP_0630 +1.0 1.0 DNA gyrase inhibitor YacG compare
PP_3835 +1.0 4.6 Sensory box histidine kinase compare
PP_4642 +1.0 1.6 Cyclic diguanosine monophosphate-binding protein compare
PP_1319 +0.9 5.8 Ubiquinol--cytochrome c reductase, cytochrome c1 compare
PP_0166 +0.9 6.6 HlyD family secretion protein compare
PP_2907 +0.9 2.4 DNA-binding response regulator compare
PP_3312 +0.9 1.4 putative Heat shock protein compare
PP_4669 +0.9 1.8 OmpA family protein compare
PP_1186 +0.9 2.4 two component system DNA-binding transcriptional dual regulator compare
PP_1410 +0.9 1.3 conserved protein of unknown function compare
PP_2280 +0.9 1.3 conserved protein of unknown function compare
PP_0396 +0.9 6.6 conserved protein of unknown function compare
PP_0735 +0.9 1.6 molybdopterin-synthase adenylyltransferase compare
PP_0962 +0.9 3.1 toluene-tolerance protein compare
PP_5583 +0.9 1.2 conserved protein of unknown function compare
PP_4171 +0.8 6.8 conserved exported protein of unknown function compare
PP_5295 +0.8 0.6 conserved protein of unknown function compare
PP_3519 +0.8 1.0 putative Lipoprotein compare
PP_4254 +0.8 1.7 conserved protein of unknown function compare
PP_4792 +0.8 1.5 conserved exported protein of unknown function compare
PP_0167 +0.8 7.2 Toxin secretion ATP-binding protein compare
PP_3434 +0.8 1.7 conserved protein of unknown function compare
PP_0165 +0.8 6.6 GGDEF domain protein compare
PP_5546 +0.8 1.0 conserved protein of unknown function compare
PP_3487 +0.8 1.6 conserved exported protein of unknown function compare
PP_1898 +0.8 2.5 MotA/TolQ/ExbB proton channel family protein compare
PP_3341 +0.8 2.6 nickel-responsive regulator compare
PP_4994 +0.8 4.4 conserved protein of unknown function compare
PP_2291 +0.8 2.2 conserved protein of unknown function compare
PP_4529 +0.8 3.2 conserved protein of unknown function compare
PP_0168 +0.8 6.8 putative surface adhesion protein compare
PP_1236 +0.8 2.1 putative Glycine cleavage system transcriptional repressor compare
PP_1128 +0.8 2.0 OmpA family protein compare
PP_4373 +0.8 5.1 Transcriptional regulator FleQ compare
PP_1110 +0.8 3.6 serine acetyltransferase compare
PP_0958 +0.8 4.1 phospholipid ABC transporter ATP-binding subunit compare
PP_0395 +0.8 6.0 putative type IV piliation protein compare
PP_5701 +0.8 1.1 conserved protein of unknown function compare
PP_0846 +0.8 1.3 DnaK-like molecular chaperone specific for IscU compare
PP_0673 +0.7 0.8 conserved protein of unknown function compare
PP_3447 +0.7 1.0 conserved membrane protein of unknown function compare
PP_4342 +0.7 1.7 flagellar synthesis regulator, putative ATPase compare
PP_5324 +0.7 1.4 Response regulator compare
PP_2718 +0.7 2.1 arsenic resistance transcriptional regulator compare
PP_3449 +0.7 1.5 conserved exported protein of unknown function compare
PP_1774 +0.7 1.6 conserved exported protein of unknown function compare
PP_4519 +0.7 5.6 Agglutination protein compare
PP_0960 +0.7 2.4 phospholipid ABC transporter binding protein compare
PP_2665 +0.7 3.0 Glycerol metabolism activator compare
PP_5053 +0.7 3.5 Protein-export protein SecB compare
PP_1903 +0.7 2.1 putative phosphotyrosine-protein phosphatase compare
PP_4629 +0.7 3.1 Sensory box protein compare
PP_1716 +0.7 1.0 Transcriptional regulator, Cro/CI family compare
PP_4172 +0.7 2.8 conserved exported protein of unknown function compare
PP_0961 +0.7 3.9 toluene tolerance protein compare
PP_3580 +0.7 1.2 conserved protein of unknown function compare
PP_1318 +0.7 4.3 Cytochrome b compare
PP_2712 +0.7 1.8 conserved exported protein of unknown function compare
PP_0959 +0.7 1.7 phospholipid ABC transporter compare
PP_3320 +0.7 2.8 conserved protein of unknown function compare
PP_5598 +0.7 1.7 conserved protein of unknown function compare
PP_0232 +0.7 1.4 ATP-binding taurine transporter subunit compare
PP_0397 +0.7 5.4 protein kinase compare
PP_4503 +0.6 1.2 DNA-binding response regulator compare
PP_1113 +0.6 3.8 Pyridoxal-phosphate dependent enzyme family protein compare
PP_1349 +0.6 2.6 ATP:cob(I)alamin adenosyltransferase compare
PP_2447 +0.6 3.0 conserved exported protein of unknown function compare
PP_3127 +0.6 3.5 putative Exopolysaccharide transport protein compare
PP_5393 +0.6 0.5 putative metal-binding chaperone compare
PP_2229 +0.6 2.0 putative K(+)/H(+) antiporter subunit C compare
PP_0719 +0.6 0.8 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0276 +0.6 1.0 Transcriptional regulator, Cro/CI family compare
PP_3073 +0.6 2.8 3-hydroxybutyrate dehydrogenase compare
PP_4236 +0.6 1.5 putative Thiol:disulfide interchange protein dsbE compare
PP_3916 +0.6 1.4 conserved protein of unknown function compare
PP_3926 +0.6 1.0 short-chain dehydrogenase compare
PP_1317 +0.6 2.9 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_1153 +0.6 2.5 putative lipoprotein compare
PP_3400 +0.6 2.4 alpha-ketoglutarate- and Fe(II)-dependent dioxygenase compare
PP_2972 +0.6 0.7 conserved protein of unknown function compare
PP_0666 +0.6 2.0 conserved protein of unknown function compare
PP_1038 +0.6 2.0 conserved protein of unknown function compare
PP_5429 +0.6 2.2 protein of unknown function compare
PP_1142 +0.6 0.6 conserved protein of unknown function compare
PP_2147 +0.6 2.5 conserved exported protein of unknown function compare
PP_2525 +0.6 1.5 conserved protein of unknown function compare
PP_5359 +0.6 1.2 CobW/P47K family protein compare
PP_4069 +0.6 1.7 conserved protein of unknown function compare
PP_1824 +0.6 0.9 Smr domain protein compare
PP_2163 +0.6 4.1 VacJ lipoprotein compare
PP_3551 +0.6 0.9 DNA-binding response regulator, LuxR family compare
PP_3876 +0.6 2.2 conserved protein of unknown function compare
PP_3129 +0.6 3.8 UDP-glucose 4-epimerase compare
PP_1845 +0.6 2.1 Enoyl-CoA hydratase/isomerase family protein compare
PP_2691 +0.6 1.9 conserved protein of unknown function compare
PP_3509 +0.6 2.5 Glyoxalase family protein compare
PP_1291 +0.6 3.1 PhoH family protein compare
PP_0683 +0.6 0.8 conserved protein of unknown function compare
PP_1862 +0.6 1.6 conserved membrane protein of unknown function compare
PP_5083 +0.6 0.9 putative Type IV pili biogenesis protein PilM compare
PP_3902 +0.6 1.1 conserved protein of unknown function compare
PP_3137 +0.6 3.1 Glycosyl transferase, group 2 family protein compare
PP_3531 +0.6 1.6 conserved exported protein of unknown function compare
PP_0104 +0.5 3.9 Cytochrome c oxidase subunit 1 compare
PP_5610 +0.5 1.4 protein of unknown function compare
PP_3135 +0.5 2.9 putative Glycosyl transferase compare
PP_2389 +0.5 2.9 conserved protein of unknown function compare
PP_1366 +0.5 0.5 Transcriptional regulator MvaT, P16 subunit compare
PP_4622 +0.5 1.3 Hmg transcriptional repressor compare
PP_0345 +0.5 2.2 putative Heptose kinase WapP compare
PP_4818 +0.5 2.0 ribosomal protein L11 methyltransferase compare
PP_0108 +0.5 2.2 conserved protein of unknown function compare
PP_3131 +0.5 3.6 conserved membrane protein of unknown function compare
PP_0022 +0.5 1.2 hypothetical protein compare
PP_1362 +0.5 1.5 pyruvate kinase II compare
PP_4427 +0.5 2.4 Amino acid ABC transporter, permease protein compare
PP_3761 +0.5 4.2 Sensor histidine kinase/response regulator compare
PP_0566 +0.5 0.7 translation-related factor compare
PP_2345 +0.5 1.1 conserved exported protein of unknown function compare
PP_5347 +0.5 3.6 pyruvate carboxylase subunit A compare
PP_3277 +0.5 1.6 ring 1,2-phenylacetyl-CoA epoxidase regulatory subunit compare
PP_3138 +0.5 2.5 VirK domain protein compare
PP_5311 +0.5 3.5 putative signal transduction protein compare
PP_0103 +0.5 3.1 cytochrome c oxidase subunit 2 compare
PP_5346 +0.5 3.6 pyruvate carboxylase subunit B compare
PP_1111 +0.5 2.0 putative Synthetase compare
PP_4630 +0.5 2.1 Transcriptional regulator, MerR family compare
PP_1959 +0.5 2.0 conserved protein of unknown function compare
PP_1368 +0.5 1.8 putative membrane protein containing a glycosyltransferase domain compare
PP_5587 +0.5 3.7 conserved protein of unknown function compare
PP_3019 +0.5 2.5 Carbon-nitrogen hydrolase family protein compare
PP_1397 +0.5 2.5 conserved protein of unknown function compare
PP_2619 +0.5 1.6 FHA domain protein compare
PP_4609 +0.5 1.6 conserved membrane protein of unknown function compare
PP_0874 +0.5 1.0 conserved protein of unknown function compare
PP_5348 +0.5 2.5 Transcriptional regulator, LysR family compare
PP_5735 +0.5 1.2 conserved hypothetical protein compare
PP_3064 +0.5 1.1 Phage tail protein compare
PP_0787 +0.5 1.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0856 +0.5 1.4 conserved lipoprotein of unknown function compare
PP_3460 +0.5 1.5 quinohemoprotein amine dehydrogenase, gamma subunit compare
PP_5473 +0.5 1.2 putative transcriptional regulator, LuxR family compare
PP_0109 +0.5 2.4 conserved membrane protein of unknown function compare
PP_0972 +0.5 1.3 UPF0213 protein PP_0972 compare
PP_5636 +0.5 2.5 protein of unknown function compare
PP_3438 +0.5 1.5 conserved membrane protein of unknown function compare
PP_3140 +0.5 3.0 Glycosyl transferase, group 2 family protein compare
PP_5557 +0.5 0.8 protein of unknown function compare
PP_4814 +0.5 1.0 ATP-dependent protease La domain protein compare
PP_4670 +0.5 3.1 diguanylate cyclase compare
PP_0497 +0.5 2.3 Transcriptional regulator, Cro/CI family compare
PP_4944 +0.5 1.4 Carbamoyltransferase compare
PP_3634 +0.5 1.8 putative acetyltransferase, GNAT family compare
PP_1513 +0.5 1.3 Ribosomal RNA small subunit methyltransferase J compare
PP_2299 +0.5 1.8 Trigger factor compare
PP_1521 +0.5 1.3 conserved protein of unknown function compare
PP_1415 +0.5 1.4 putative membrane associated enzyme subunit compare
PP_3141 +0.5 2.5 Glycosyl transferase, WecB/TagA/CpsF family compare
PP_2413 +0.5 3.3 GGDEF family protein compare
PP_2749 +0.5 1.4 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_4545 +0.5 2.1 beta-ketodecanoyl-(Acyl-carrier-protein) synthase compare
PP_2061 +0.5 1.5 conserved protein of unknown function compare
PP_3136 +0.5 1.6 putative O-acetyltransferase compare
PP_2459 +0.5 0.8 ribose pyranase compare
PP_4231 +0.5 2.7 putative Xanthine dehydrogenase accessory factor compare
PP_1633 +0.5 1.2 conserved exported protein of unknown function compare
PP_2937 +0.5 1.7 putative Integrase compare
PP_1364 +0.5 3.2 conserved exported protein of unknown function compare
PP_3058 +0.5 1.3 conserved protein of unknown function compare
PP_5449 +0.5 1.7 conserved exported protein of unknown function compare
PP_5670 +0.5 1.5 conserved protein of unknown function compare
PP_1763 +0.5 0.9 putative oxidoreductase compare
PP_5272 +0.5 1.5 conserved protein of unknown function compare
PP_3128 +0.5 2.2 putative Exopolysaccharide biosynthesis/transport protein compare
PP_4981 +0.5 1.2 polyisoprene-binding protein, acidic stress response factor compare
PP_0416 +0.5 2.1 Phosphoglycolate phosphatase compare
PP_1374 +0.5 1.5 conserved protein of unknown function compare
PP_2595 +0.5 1.6 putative ABC transporter, permease/ATP-binding protein compare
PP_4401 +0.5 3.0 branched-chain alpha-keto acid dehydrogenase complex, alpha subunit compare
PP_3295 +0.5 1.4 YeeE/YedE family protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source Rhamnogalacturonan - from potato in Pseudomonas putida KT2440

For carbon source Rhamnogalacturonan - from potato across organisms